Wall clock time and date at job start Tue Mar 31 2020 12:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 112.85063 * 2 1 4 4 C 1.53777 * 113.61560 * 131.20279 * 2 1 3 5 5 C 1.53771 * 87.08572 * 89.11060 * 4 2 1 6 6 C 1.50702 * 113.61527 * 139.98176 * 5 4 2 7 7 O 1.21283 * 120.00006 * 1.53203 * 6 5 4 8 8 N 1.34783 * 120.00113 * 181.53241 * 6 5 4 9 9 C 1.39573 * 120.00065 * 179.97438 * 8 6 5 10 10 N 1.32272 * 119.72873 * 359.97438 * 9 8 6 11 11 C 1.31960 * 121.69603 * 180.02562 * 10 9 8 12 12 C 1.38081 * 120.94943 * 0.02562 * 11 10 9 13 13 C 1.38775 * 119.35675 * 359.97438 * 12 11 10 14 14 C 1.38793 * 118.44899 * 359.97438 * 13 12 11 15 15 O 1.35985 * 120.49800 * 179.97438 * 14 13 12 16 16 C 1.42894 * 117.00127 * 0.02562 * 15 14 13 17 17 C 1.52993 * 109.47184 * 180.02562 * 16 15 14 18 18 C 1.50706 * 109.47175 * 179.97438 * 17 16 15 19 19 H 1.07995 * 119.99637 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99874 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00566 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99943 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46658 * 90.00092 * 22 20 18 24 24 H 1.48496 * 109.47417 * 210.00375 * 22 20 18 25 25 H 1.48500 * 109.47126 * 330.00681 * 22 20 18 26 26 C 1.53785 * 87.17190 * 25.39298 * 5 4 2 27 27 H 1.09005 * 109.47208 * 288.80313 * 1 2 3 28 28 H 1.09004 * 109.47179 * 48.79645 * 1 2 3 29 29 H 1.09000 * 109.47352 * 168.80152 * 1 2 3 30 30 H 1.09009 * 109.47075 * 191.19612 * 3 2 1 31 31 H 1.08996 * 109.47541 * 311.20036 * 3 2 1 32 32 H 1.09002 * 109.47057 * 71.20392 * 3 2 1 33 33 H 1.09010 * 113.61446 * 334.56130 * 4 2 1 34 34 H 1.09001 * 113.61486 * 203.66611 * 4 2 1 35 35 H 1.09000 * 113.62009 * 270.80171 * 5 4 2 36 36 H 0.97005 * 119.99606 * 0.02562 * 8 6 5 37 37 H 1.07996 * 119.52049 * 180.02562 * 11 10 9 38 38 H 1.08001 * 120.32567 * 179.97438 * 12 11 10 39 39 H 1.08002 * 120.77763 * 179.73382 * 13 12 11 40 40 H 1.09004 * 109.46973 * 300.00245 * 16 15 14 41 41 H 1.09001 * 109.46823 * 59.99905 * 16 15 14 42 42 H 1.09004 * 109.47159 * 299.99878 * 17 16 15 43 43 H 1.09001 * 109.47525 * 60.00082 * 17 16 15 44 44 H 0.96995 * 120.00545 * 179.97438 * 21 20 18 45 45 H 1.09000 * 113.61465 * 89.15731 * 26 5 4 46 46 H 1.09006 * 113.61267 * 220.06033 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9281 1.0601 5 6 2.0928 -2.0426 0.0019 6 6 3.3077 -2.9343 0.0027 7 8 4.1938 -2.7512 0.8104 8 7 3.4096 -3.9352 -0.8942 9 6 4.5351 -4.7607 -0.8938 10 7 5.4987 -4.5556 -0.0112 11 6 6.5794 -5.3119 0.0236 12 6 6.7463 -6.3536 -0.8673 13 6 5.7608 -6.6059 -1.8113 14 6 4.6344 -5.7951 -1.8241 15 8 3.6434 -6.0048 -2.7313 16 6 3.8231 -7.0840 -3.6505 17 6 2.6153 -7.1633 -4.5863 18 6 2.8051 -8.3011 -5.5561 19 1 3.6976 -8.9073 -5.5093 20 6 1.8387 -8.5688 -6.5023 21 7 0.7515 -7.8310 -6.5590 22 14 2.0742 -9.9788 -7.7050 23 1 1.5012 -11.2217 -7.1287 24 1 1.3848 -9.6612 -8.9813 25 1 3.5239 -10.1743 -7.9607 26 6 2.1448 -0.9317 -1.0603 27 1 -0.3634 0.3312 0.9729 28 1 -0.3634 0.6770 -0.7732 29 1 -0.3634 -1.0081 -0.1996 30 1 3.1943 1.3532 -0.1996 31 1 1.6415 2.0076 -0.7732 32 1 1.9601 1.8733 0.9729 33 1 1.4945 -1.1069 1.9156 34 1 3.1590 -0.6487 1.3495 35 1 1.1573 -2.6019 0.0033 36 1 2.7011 -4.0813 -1.5404 37 1 7.3444 -5.1133 0.7596 38 1 7.6351 -6.9660 -0.8301 39 1 5.8696 -7.4119 -2.5219 40 1 4.7262 -6.9152 -4.2370 41 1 3.9177 -8.0192 -3.0987 42 1 1.7119 -7.3319 -4.0001 43 1 2.5211 -6.2280 -5.1381 44 1 0.0718 -8.0191 -7.2249 45 1 3.1575 -0.6533 -1.3518 46 1 1.4922 -1.1134 -1.9144 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351820993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:01 Heat of formation + Delta-G solvation = -43.175015 kcal Electronic energy + Delta-G solvation = -26141.465175 eV Core-core repulsion = 22417.247335 eV Total energy + Delta-G solvation = -3724.217840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.17531 -41.21280 -39.49710 -38.86473 -35.95779 -35.44426 -32.94660 -32.43819 -31.78655 -30.29968 -28.25247 -27.17703 -26.72183 -25.99692 -24.52809 -23.64274 -22.57974 -21.11543 -19.60284 -19.19647 -18.84801 -18.34984 -18.02198 -17.19873 -17.09285 -16.50814 -16.41220 -16.04681 -15.71120 -15.48111 -15.19081 -15.03638 -14.69517 -14.36403 -14.20584 -13.96797 -13.82876 -13.64103 -13.60543 -13.31141 -12.81268 -12.74988 -12.73467 -12.46449 -12.44817 -12.12266 -11.86119 -11.78259 -11.71432 -11.63190 -11.43110 -11.34295 -11.05453 -11.03888 -10.60834 -10.42003 -10.13531 -8.86940 -8.25607 -6.38167 0.07301 0.27351 1.42597 1.43494 1.54370 1.62670 1.85920 2.10511 2.44222 2.85886 3.09669 3.34116 3.44190 3.56450 3.65945 3.71274 3.84418 3.90888 4.09051 4.21084 4.28491 4.32543 4.36595 4.45783 4.50001 4.68311 4.74040 4.75792 4.85630 4.88476 4.94463 4.95592 5.03768 5.12156 5.18297 5.21813 5.22807 5.29218 5.30837 5.45968 5.50209 5.52338 5.60201 5.73370 6.07804 6.20871 6.32563 6.76544 6.93739 7.26455 7.31894 8.86986 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011559 B = 0.002995 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2421.860685 B = 9346.245520 C =11524.727708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.079 4.079 3 C -0.135 4.135 4 C -0.106 4.106 5 C -0.134 4.134 6 C 0.511 3.489 7 O -0.519 6.519 8 N -0.652 5.652 9 C 0.309 3.691 10 N -0.475 5.475 11 C 0.072 3.928 12 C -0.145 4.145 13 C -0.149 4.149 14 C 0.040 3.960 15 O -0.328 6.328 16 C 0.083 3.917 17 C 0.031 3.969 18 C -0.545 4.545 19 H 0.070 0.930 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.970 3.030 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.116 4.116 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.427 0.573 37 H 0.186 0.814 38 H 0.176 0.824 39 H 0.157 0.843 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.002 0.998 43 H 0.002 0.998 44 H 0.266 0.734 45 H 0.072 0.928 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 11.951 13.160 18.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.079 4.079 3 C -0.192 4.192 4 C -0.144 4.144 5 C -0.155 4.155 6 C 0.299 3.701 7 O -0.392 6.392 8 N -0.299 5.299 9 C 0.077 3.923 10 N -0.190 5.190 11 C -0.084 4.084 12 C -0.166 4.166 13 C -0.176 4.176 14 C -0.010 4.010 15 O -0.242 6.242 16 C 0.009 3.991 17 C -0.007 4.007 18 C -0.583 4.583 19 H 0.088 0.912 20 C -0.194 4.194 21 N -0.568 5.568 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.184 1.184 26 C -0.154 4.154 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.266 0.734 37 H 0.203 0.797 38 H 0.193 0.807 39 H 0.175 0.825 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.020 0.980 43 H 0.020 0.980 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.001 12.961 14.225 19.883 hybrid contribution -0.232 -1.689 -1.728 2.427 sum 4.769 11.273 12.497 17.493 Atomic orbital electron populations 1.21636 0.91590 1.02588 1.02782 1.21786 0.96534 0.94553 0.95064 1.21715 1.00080 0.94903 1.02493 1.22940 1.01718 0.93363 0.96366 1.22905 0.95916 0.94765 1.01918 1.21426 0.89244 0.79964 0.79439 1.90729 1.41509 1.69326 1.37589 1.43694 1.19890 1.30251 1.36106 1.18095 0.90299 0.90898 0.93034 1.67682 1.01828 1.28785 1.20736 1.23063 0.94362 0.91846 0.99179 1.22275 1.00461 0.99112 0.94757 1.21910 0.93209 1.00618 1.01826 1.19766 0.91462 0.97026 0.92776 1.86027 1.41702 1.52892 1.43569 1.22957 1.00416 0.86714 0.88992 1.18938 0.92334 0.96521 0.92872 1.21394 1.05692 1.15203 1.15983 0.91154 1.25947 0.94633 0.99363 0.99469 1.70092 1.09563 1.40875 1.36225 0.85373 0.78906 0.78645 0.77693 1.19729 1.20873 1.18410 1.23088 1.01668 0.93875 0.96732 0.91389 0.91486 0.92042 0.93401 0.91602 0.91702 0.89968 0.90556 0.84830 0.73431 0.79719 0.80669 0.82544 0.91856 0.91829 0.98005 0.97978 0.92507 0.90905 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.07 71.98 0.65 -0.98 16 2 C -0.08 -1.26 1.39 -51.60 -0.07 -1.33 16 3 C -0.13 -1.97 9.20 71.98 0.66 -1.31 16 4 C -0.11 -2.06 6.55 31.12 0.20 -1.86 16 5 C -0.13 -2.82 3.79 -11.01 -0.04 -2.86 16 6 C 0.51 15.24 7.32 87.66 0.64 15.89 16 7 O -0.52 -18.99 14.16 -3.04 -0.04 -19.04 16 8 N -0.65 -20.12 5.39 -308.02 -1.66 -21.78 16 9 C 0.31 10.56 7.45 132.99 0.99 11.55 16 10 N -0.47 -16.09 7.88 -192.59 -1.52 -17.60 16 11 C 0.07 1.86 11.17 84.64 0.95 2.81 16 12 C -0.15 -3.26 10.10 22.36 0.23 -3.03 16 13 C -0.15 -4.13 9.14 22.53 0.21 -3.92 16 14 C 0.04 1.36 6.72 22.70 0.15 1.51 16 15 O -0.33 -12.37 9.39 -93.38 -0.88 -13.25 16 16 C 0.08 3.29 4.70 71.98 0.34 3.63 16 17 C 0.03 1.54 5.34 29.85 0.16 1.70 16 18 C -0.54 -29.08 9.11 25.60 0.23 -28.85 16 19 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 20 C 0.00 0.26 5.46 84.65 0.46 0.72 16 21 N -0.93 -54.15 13.29 21.45 0.28 -53.87 16 22 Si 0.97 41.89 29.54 68.60 2.03 43.91 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 26 C -0.12 -2.18 6.76 31.18 0.21 -1.97 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.77 7.34 -2.39 -0.02 0.75 16 30 H 0.05 0.78 7.96 -2.38 -0.02 0.77 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.41 8.10 -2.38 -0.02 1.39 16 34 H 0.08 1.80 7.41 -2.39 -0.02 1.78 16 35 H 0.13 2.30 7.66 -2.39 -0.02 2.29 16 36 H 0.43 12.02 8.05 -92.70 -0.75 11.27 16 37 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 38 H 0.18 2.45 8.06 -2.91 -0.02 2.42 16 39 H 0.16 3.89 6.44 -2.91 -0.02 3.87 16 40 H 0.06 2.33 7.69 -2.38 -0.02 2.31 16 41 H 0.06 2.34 7.70 -2.39 -0.02 2.32 16 42 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 43 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 44 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.07 1.56 7.93 -2.39 -0.02 1.55 16 46 H 0.09 1.50 8.10 -2.38 -0.02 1.48 16 Total: -1.00 -70.08 379.62 4.42 -65.67 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.23 Total: 24.26 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: 5.97 Total: -8.30 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -2.89 Total: -93.25 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.92 Total: -32.29 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Total: -70.08 4.42 -65.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351820993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.490 kcal (2) G-P(sol) polarization free energy of solvation -70.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds