Wall clock time and date at job start Tue Mar 31 2020 13:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35997 * 117.00021 * 2 1 4 4 C 1.38564 * 120.07192 * 0.02562 * 3 2 1 5 5 C 1.38239 * 119.99563 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.92613 * 179.97438 * 5 4 3 7 7 C 1.38249 * 120.14904 * 359.97438 * 5 4 3 8 8 C 1.50705 * 119.92962 * 179.97438 * 7 5 4 9 9 N 1.46901 * 109.47046 * 282.32794 * 8 7 5 10 10 C 1.46898 * 110.99950 * 164.16559 * 9 8 7 11 11 C 1.50707 * 109.47153 * 192.80629 * 10 9 8 12 12 H 1.07995 * 119.99825 * 1.35859 * 11 10 9 13 13 C 1.37878 * 119.99758 * 181.36127 * 11 10 9 14 14 N 1.31520 * 119.99687 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00181 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47231 * 90.00095 * 15 13 11 17 17 H 1.48499 * 109.47072 * 209.99912 * 15 13 11 18 18 H 1.48501 * 109.47407 * 329.99748 * 15 13 11 19 19 C 1.46891 * 111.00013 * 288.12118 * 9 8 7 20 20 C 1.53011 * 109.47005 * 297.87612 * 19 9 8 21 21 C 1.47196 * 109.46942 * 183.26083 * 20 19 9 22 22 N 8.30251 * 141.45923 * 318.50661 * 2 1 3 23 23 C 1.38241 * 120.14673 * 0.02562 * 7 5 4 24 24 C 1.38566 * 119.99969 * 359.72212 * 23 7 5 25 25 O 1.35991 * 120.07440 * 180.27033 * 24 23 7 26 26 C 1.42904 * 116.99860 * 0.28404 * 25 24 23 27 27 H 1.09006 * 109.47158 * 59.99663 * 1 2 3 28 28 H 1.08999 * 109.46696 * 300.00026 * 1 2 3 29 29 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00009 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47481 * 87.49880 * 6 5 4 32 32 H 1.09000 * 109.47086 * 207.50331 * 6 5 4 33 33 H 1.09005 * 109.46851 * 327.50330 * 6 5 4 34 34 H 1.09004 * 109.46533 * 42.32186 * 8 7 5 35 35 H 1.08994 * 109.47348 * 162.32701 * 8 7 5 36 36 H 1.09008 * 109.47240 * 312.80261 * 10 9 8 37 37 H 1.09004 * 109.47471 * 72.80489 * 10 9 8 38 38 H 0.96997 * 119.99807 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.47387 * 57.87771 * 19 9 8 40 40 H 1.08999 * 109.47434 * 177.88370 * 19 9 8 41 41 H 1.08996 * 109.46814 * 303.26868 * 20 19 9 42 42 H 1.09000 * 109.46594 * 63.26750 * 20 19 9 43 43 H 1.08000 * 119.99826 * 179.97438 * 23 7 5 44 44 H 1.08994 * 109.47691 * 59.99608 * 26 25 24 45 45 H 1.09000 * 109.46570 * 179.97438 * 26 25 24 46 46 H 1.08994 * 109.46710 * 299.98908 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0000 6 6 1.1017 4.8696 0.0000 7 6 3.3029 3.6798 -0.0005 8 6 3.9838 5.0243 -0.0017 9 7 3.9407 5.5938 -1.3552 10 6 4.2450 7.0307 -1.3316 11 6 3.8893 7.6414 -2.6626 12 1 3.4578 7.0283 -3.4400 13 6 4.1147 8.9829 -2.8879 14 7 3.8047 9.5157 -4.0496 15 14 4.8603 10.0434 -1.5430 16 1 6.3402 10.0288 -1.6645 17 1 4.3662 11.4370 -1.6805 18 1 4.4673 9.5077 -0.2150 19 6 4.8523 4.8773 -2.2570 20 6 6.2896 5.0277 -1.7543 21 6 7.2107 4.3764 -2.6998 22 7 7.9229 3.8748 -3.4273 23 6 4.0603 2.5233 -0.0011 24 6 3.4359 1.2863 0.0047 25 8 4.1795 0.1476 0.0098 26 6 5.6003 0.3007 0.0150 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2146 2.3196 0.0005 31 1 0.8666 5.1502 1.0267 32 1 1.6681 5.6706 -0.4750 33 1 0.1766 4.7021 -0.5518 34 1 3.4702 5.6921 0.6900 35 1 5.0215 4.9063 0.3100 36 1 3.6648 7.5121 -0.5443 37 1 5.3083 7.1738 -1.1387 38 1 3.9629 10.4595 -4.2080 39 1 4.5843 3.8210 -2.2806 40 1 4.7730 5.2948 -3.2607 41 1 6.5380 6.0861 -1.6756 42 1 6.3828 4.5587 -0.7748 43 1 5.1386 2.5840 -0.0019 44 1 5.9031 0.8521 0.9051 45 1 6.0715 -0.6822 0.0192 46 1 5.9099 0.8486 -0.8748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355498693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:55 Heat of formation + Delta-G solvation = -11.701895 kcal Electronic energy + Delta-G solvation = -27239.837217 eV Core-core repulsion = 23516.984154 eV Total energy + Delta-G solvation = -3722.853063 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.63840 -38.56238 -38.37571 -36.91334 -35.88916 -32.67970 -31.93276 -31.26202 -30.31970 -28.32828 -27.66616 -27.28218 -26.01829 -24.80761 -23.13456 -21.81848 -20.90950 -19.72839 -18.18964 -17.68701 -16.90770 -16.76595 -16.59784 -16.09538 -15.38622 -15.25971 -14.91859 -14.58779 -14.46520 -14.23319 -14.11993 -13.84862 -13.46085 -13.36094 -13.13685 -12.55647 -12.40637 -12.29673 -12.26222 -12.09689 -12.01426 -11.70769 -11.58385 -11.51767 -11.37546 -11.21702 -11.12161 -10.97844 -10.79781 -10.47908 -10.43265 -10.18820 -9.92416 -9.40224 -8.65280 -8.56189 -7.64929 -7.51115 -6.12064 -4.10580 1.36027 1.52774 3.01075 3.03334 3.20948 3.26223 3.28621 3.28843 3.31036 3.72659 4.21515 4.33884 4.70507 4.80333 4.91208 4.97287 5.06423 5.07776 5.11279 5.15067 5.19422 5.23335 5.31351 5.36880 5.41297 5.43129 5.45631 5.59172 5.64109 5.77307 5.85996 5.95807 5.98548 6.11313 6.18908 6.33303 6.49944 6.53701 6.70211 6.79592 6.83999 6.88518 7.05846 7.46584 7.61135 7.69115 7.78192 7.87105 8.54668 8.98358 9.48539 11.00901 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.004098 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.224729 B = 6830.573584 C = 8244.463327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.095 3.905 4 C -0.175 4.175 5 C -0.051 4.051 6 C -0.121 4.121 7 C -0.065 4.065 8 C 0.082 3.918 9 N -0.508 5.508 10 C 0.155 3.845 11 C -0.511 4.511 12 H 0.082 0.918 13 C 0.071 3.929 14 N -0.897 5.897 15 Si 0.870 3.130 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.071 3.929 20 C -0.075 4.075 21 C 0.222 3.778 22 N -0.454 5.454 23 C -0.163 4.163 24 C 0.087 3.913 25 O -0.310 6.310 26 C 0.028 3.972 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.132 0.868 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.032 0.968 37 H -0.008 1.008 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.130 0.870 44 H 0.053 0.947 45 H 0.096 0.904 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.224 -14.775 12.769 19.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.050 3.950 4 C -0.194 4.194 5 C -0.051 4.051 6 C -0.177 4.177 7 C -0.066 4.066 8 C -0.045 4.045 9 N -0.230 5.230 10 C 0.029 3.971 11 C -0.549 4.549 12 H 0.100 0.900 13 C -0.131 4.131 14 N -0.535 5.535 15 Si 0.697 3.303 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.190 1.190 19 C -0.060 4.060 20 C -0.117 4.117 21 C -0.096 4.096 22 N -0.132 5.132 23 C -0.183 4.183 24 C 0.042 3.958 25 O -0.224 6.224 26 C -0.068 4.068 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.149 0.851 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.010 0.990 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.115 0.885 41 H 0.136 0.864 42 H 0.116 0.884 43 H 0.148 0.852 44 H 0.071 0.929 45 H 0.115 0.885 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.636 -15.764 11.402 19.633 hybrid contribution 0.955 1.301 1.186 2.003 sum -1.681 -14.464 12.588 19.248 Atomic orbital electron populations 1.23015 0.78949 1.03548 1.01234 1.86138 1.20715 1.26244 1.89357 1.18176 0.89033 0.84985 1.02844 1.20927 0.99625 0.91042 1.07819 1.19478 0.93211 0.94505 0.97949 1.20898 0.99469 0.95807 1.01539 1.19437 0.92863 0.94240 1.00060 1.21139 0.97965 0.92537 0.92881 1.62210 1.50023 1.04828 1.05930 1.20365 0.94247 0.83215 0.99258 1.20980 1.41681 0.94316 0.97922 0.89954 1.24889 0.95320 0.97765 0.95155 1.69885 1.48087 1.12973 1.22565 0.86952 0.79773 0.80451 0.83093 1.20345 1.21199 1.19043 1.22097 0.85313 0.99106 0.99450 1.20233 0.94552 1.01914 0.94997 1.29113 0.93438 0.93031 0.93995 1.81113 1.11052 1.10627 1.10402 1.20924 0.99912 0.90665 1.06759 1.18122 0.88119 0.85887 1.03640 1.86134 1.18344 1.28489 1.89449 1.23015 0.79024 1.03519 1.01212 0.92721 0.92890 0.88584 0.85066 0.92014 0.88349 0.92087 0.89785 0.94222 0.95006 0.99003 0.92596 0.91307 0.88455 0.86362 0.88416 0.85222 0.92882 0.88544 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.13 10.28 -34.23 -0.35 -4.48 16 3 C 0.09 1.32 6.70 -39.12 -0.26 1.06 16 4 C -0.18 -2.23 8.70 -39.46 -0.34 -2.57 16 5 C -0.05 -0.68 5.88 -104.62 -0.62 -1.30 16 6 C -0.12 -1.55 9.34 36.01 0.34 -1.21 16 7 C -0.07 -0.88 4.73 -104.61 -0.49 -1.37 16 8 C 0.08 1.12 4.08 -4.97 -0.02 1.10 16 9 N -0.51 -8.53 3.80 -237.51 -0.90 -9.44 16 10 C 0.15 3.10 3.62 -4.97 -0.02 3.08 16 11 C -0.51 -12.88 9.05 -34.44 -0.31 -13.19 16 12 H 0.08 2.32 7.60 -52.49 -0.40 1.92 16 13 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 14 N -0.90 -25.98 13.96 55.43 0.77 -25.20 16 15 Si 0.87 19.65 27.44 -169.99 -4.66 14.99 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.27 -5.62 6.58 56.52 0.37 -5.24 16 19 C 0.07 1.12 5.00 -3.82 -0.02 1.10 16 20 C -0.08 -1.02 5.07 -29.51 -0.15 -1.17 16 21 C 0.22 3.42 15.43 -20.80 -0.32 3.10 16 22 N -0.45 -8.00 18.53 42.11 0.78 -7.22 16 23 C -0.16 -2.09 7.93 -39.46 -0.31 -2.40 16 24 C 0.09 1.22 6.70 -39.12 -0.26 0.96 16 25 O -0.31 -4.24 10.28 -34.21 -0.35 -4.59 16 26 C 0.03 0.27 9.81 101.05 0.99 1.26 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.13 1.37 6.30 -52.49 -0.33 1.04 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.50 6.11 -51.93 -0.32 1.18 16 33 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.08 1.13 6.99 -51.93 -0.36 0.76 16 35 H 0.04 0.47 5.74 -51.93 -0.30 0.17 16 36 H 0.03 0.65 6.95 -51.92 -0.36 0.29 16 37 H -0.01 -0.14 5.24 -51.93 -0.27 -0.42 16 38 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.07 1.03 6.86 -51.93 -0.36 0.67 16 40 H 0.10 1.82 7.04 -51.93 -0.37 1.45 16 41 H 0.12 1.71 6.11 -51.93 -0.32 1.39 16 42 H 0.10 1.04 6.38 -51.93 -0.33 0.71 16 43 H 0.13 1.41 6.26 -52.49 -0.33 1.08 16 44 H 0.05 0.44 7.68 -51.93 -0.40 0.04 16 45 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 LS Contribution 371.46 15.07 5.60 5.60 Total: -1.00 -31.18 371.46 -6.51 -37.69 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.48 Total: 1.20 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -0.91 Total: -8.54 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: 0.65 Total: -41.86 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.70 Total: -9.07 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.66 Total: 14.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.18 -6.51 -37.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355498693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.986 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds