Wall clock time and date at job start Tue Mar 31 2020 13:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35997 * 117.00021 * 2 1 4 4 C 1.38564 * 120.07192 * 0.02562 * 3 2 1 5 5 C 1.38239 * 119.99563 * 180.02562 * 4 3 2 6 6 C 1.50704 * 119.92613 * 179.97438 * 5 4 3 7 7 C 1.38249 * 120.14904 * 359.97438 * 5 4 3 8 8 C 1.50705 * 119.92962 * 179.97438 * 7 5 4 9 9 N 1.46901 * 109.47046 * 282.32794 * 8 7 5 10 10 C 1.46898 * 110.99950 * 164.16559 * 9 8 7 11 11 C 1.50707 * 109.47153 * 192.80629 * 10 9 8 12 12 H 1.07995 * 119.99825 * 1.35859 * 11 10 9 13 13 C 1.37878 * 119.99758 * 181.36127 * 11 10 9 14 14 N 1.31520 * 119.99687 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00181 * 359.97438 * 13 11 10 16 16 H 1.48493 * 109.47231 * 90.00095 * 15 13 11 17 17 H 1.48499 * 109.47072 * 209.99912 * 15 13 11 18 18 H 1.48501 * 109.47407 * 329.99748 * 15 13 11 19 19 C 1.46891 * 111.00013 * 288.12118 * 9 8 7 20 20 C 1.53011 * 109.47005 * 297.87612 * 19 9 8 21 21 C 1.47196 * 109.46942 * 183.26083 * 20 19 9 22 22 N 8.30251 * 141.45923 * 318.50661 * 2 1 3 23 23 C 1.38241 * 120.14673 * 0.02562 * 7 5 4 24 24 C 1.38566 * 119.99969 * 359.72212 * 23 7 5 25 25 O 1.35991 * 120.07440 * 180.27033 * 24 23 7 26 26 C 1.42904 * 116.99860 * 0.28404 * 25 24 23 27 27 H 1.09006 * 109.47158 * 59.99663 * 1 2 3 28 28 H 1.08999 * 109.46696 * 300.00026 * 1 2 3 29 29 H 1.08996 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00009 * 359.97438 * 4 3 2 31 31 H 1.09002 * 109.47481 * 87.49880 * 6 5 4 32 32 H 1.09000 * 109.47086 * 207.50331 * 6 5 4 33 33 H 1.09005 * 109.46851 * 327.50330 * 6 5 4 34 34 H 1.09004 * 109.46533 * 42.32186 * 8 7 5 35 35 H 1.08994 * 109.47348 * 162.32701 * 8 7 5 36 36 H 1.09008 * 109.47240 * 312.80261 * 10 9 8 37 37 H 1.09004 * 109.47471 * 72.80489 * 10 9 8 38 38 H 0.96997 * 119.99807 * 179.97438 * 14 13 11 39 39 H 1.09000 * 109.47387 * 57.87771 * 19 9 8 40 40 H 1.08999 * 109.47434 * 177.88370 * 19 9 8 41 41 H 1.08996 * 109.46814 * 303.26868 * 20 19 9 42 42 H 1.09000 * 109.46594 * 63.26750 * 20 19 9 43 43 H 1.08000 * 119.99826 * 179.97438 * 23 7 5 44 44 H 1.08994 * 109.47691 * 59.99608 * 26 25 24 45 45 H 1.09000 * 109.46570 * 179.97438 * 26 25 24 46 46 H 1.08994 * 109.46710 * 299.98908 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0000 6 6 1.1017 4.8696 0.0000 7 6 3.3029 3.6798 -0.0005 8 6 3.9838 5.0243 -0.0017 9 7 3.9407 5.5938 -1.3552 10 6 4.2450 7.0307 -1.3316 11 6 3.8893 7.6414 -2.6626 12 1 3.4578 7.0283 -3.4400 13 6 4.1147 8.9829 -2.8879 14 7 3.8047 9.5157 -4.0496 15 14 4.8603 10.0434 -1.5430 16 1 6.3402 10.0288 -1.6645 17 1 4.3662 11.4370 -1.6805 18 1 4.4673 9.5077 -0.2150 19 6 4.8523 4.8773 -2.2570 20 6 6.2896 5.0277 -1.7543 21 6 7.2107 4.3764 -2.6998 22 7 7.9229 3.8748 -3.4273 23 6 4.0603 2.5233 -0.0011 24 6 3.4359 1.2863 0.0047 25 8 4.1795 0.1476 0.0098 26 6 5.6003 0.3007 0.0150 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2146 2.3196 0.0005 31 1 0.8666 5.1502 1.0267 32 1 1.6681 5.6706 -0.4750 33 1 0.1766 4.7021 -0.5518 34 1 3.4702 5.6921 0.6900 35 1 5.0215 4.9063 0.3100 36 1 3.6648 7.5121 -0.5443 37 1 5.3083 7.1738 -1.1387 38 1 3.9629 10.4595 -4.2080 39 1 4.5843 3.8210 -2.2806 40 1 4.7730 5.2948 -3.2607 41 1 6.5380 6.0861 -1.6756 42 1 6.3828 4.5587 -0.7748 43 1 5.1386 2.5840 -0.0019 44 1 5.9031 0.8521 0.9051 45 1 6.0715 -0.6822 0.0192 46 1 5.9099 0.8486 -0.8748 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355498693.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:55 Heat of formation + Delta-G solvation = -30.996750 kcal Electronic energy + Delta-G solvation = -27240.673905 eV Core-core repulsion = 23516.984154 eV Total energy + Delta-G solvation = -3723.689751 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59274 -39.70390 -39.30809 -38.02385 -37.17575 -34.59867 -32.91990 -32.32730 -31.67863 -29.47651 -28.82303 -28.03449 -27.15866 -25.89134 -24.63640 -22.77236 -22.11781 -20.99207 -19.18742 -18.98407 -18.54291 -17.76159 -17.61557 -17.02095 -16.70398 -16.34458 -16.07867 -15.67736 -15.63065 -15.37045 -15.25107 -15.05541 -14.62172 -14.50447 -14.29716 -14.11702 -13.65946 -13.44434 -13.25347 -13.11915 -13.09327 -13.01113 -12.76649 -12.67047 -12.53983 -12.39348 -12.28924 -12.00834 -11.90512 -11.79471 -11.66264 -11.47833 -11.39977 -11.28177 -10.65629 -9.52522 -8.89408 -8.55112 -8.15267 -6.17414 0.39143 0.52066 1.44907 1.47736 1.56727 1.76301 1.80215 2.43864 2.44115 2.45307 2.70637 3.01746 3.20813 3.52864 3.86377 3.93154 4.09642 4.16592 4.19177 4.25095 4.39958 4.40590 4.42281 4.44492 4.47340 4.49871 4.66203 4.67659 4.75128 4.76032 4.79119 4.91640 4.98380 5.01587 5.10790 5.18913 5.21053 5.31907 5.38083 5.51980 5.67802 5.85539 5.88396 6.09334 6.18833 6.40483 6.60370 6.70115 6.76228 6.92176 7.46058 9.01647 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013291 B = 0.004098 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.224729 B = 6830.573584 C = 8244.463327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.081 3.919 4 C -0.176 4.176 5 C -0.063 4.063 6 C -0.116 4.116 7 C -0.075 4.075 8 C 0.085 3.915 9 N -0.521 5.521 10 C 0.163 3.837 11 C -0.503 4.503 12 H 0.035 0.965 13 C 0.005 3.995 14 N -0.956 5.956 15 Si 0.939 3.061 16 H -0.269 1.269 17 H -0.296 1.296 18 H -0.233 1.233 19 C 0.076 3.924 20 C -0.065 4.065 21 C 0.242 3.758 22 N -0.495 5.495 23 C -0.159 4.159 24 C 0.070 3.930 25 O -0.331 6.331 26 C 0.020 3.980 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.039 0.961 37 H 0.012 0.988 38 H 0.262 0.738 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.151 0.849 44 H 0.069 0.931 45 H 0.114 0.886 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.502 -15.444 15.893 22.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.035 3.965 4 C -0.195 4.195 5 C -0.064 4.064 6 C -0.172 4.172 7 C -0.076 4.076 8 C -0.041 4.041 9 N -0.243 5.243 10 C 0.037 3.963 11 C -0.542 4.542 12 H 0.053 0.947 13 C -0.191 4.191 14 N -0.597 5.597 15 Si 0.763 3.237 16 H -0.195 1.195 17 H -0.223 1.223 18 H -0.156 1.156 19 C -0.054 4.054 20 C -0.107 4.107 21 C -0.075 4.075 22 N -0.173 5.173 23 C -0.178 4.178 24 C 0.025 3.975 25 O -0.246 6.246 26 C -0.075 4.075 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.134 0.866 30 H 0.167 0.833 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.134 0.866 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.087 0.913 45 H 0.132 0.868 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.915 -16.472 14.553 22.063 hybrid contribution 0.616 1.351 0.154 1.492 sum -1.299 -15.121 14.707 21.133 Atomic orbital electron populations 1.23294 0.76891 1.05257 1.02046 1.86107 1.22969 1.26273 1.89340 1.18466 0.89545 0.85524 1.02924 1.21095 1.00588 0.90495 1.07324 1.19665 0.93630 0.94870 0.98193 1.20831 0.99142 0.94799 1.02430 1.19467 0.92963 0.94320 1.00816 1.21178 0.99750 0.92473 0.90724 1.62012 1.50700 1.03326 1.08261 1.20135 0.95200 0.85033 0.95952 1.21273 1.39747 0.93909 0.99222 0.94702 1.25821 0.96228 0.99525 0.97526 1.70079 1.50939 1.13220 1.25491 0.85846 0.78989 0.77710 0.81197 1.19464 1.22264 1.15605 1.21900 0.86893 0.99042 0.97543 1.20263 0.92157 1.02005 0.96240 1.29377 0.92782 0.92048 0.93310 1.81136 1.12483 1.12122 1.11585 1.21084 1.00892 0.89947 1.05855 1.18403 0.88549 0.86471 1.04073 1.86108 1.20188 1.28779 1.89511 1.23267 0.77228 1.05042 1.01934 0.92279 0.91616 0.86565 0.83299 0.90241 0.90748 0.91742 0.89206 0.91433 0.94297 0.97009 0.92954 0.90363 0.92468 0.86575 0.84203 0.83180 0.91267 0.86799 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.51 10.28 -79.65 -0.82 -9.33 16 3 C 0.08 2.15 6.70 22.57 0.15 2.30 16 4 C -0.18 -4.22 8.70 22.35 0.19 -4.03 16 5 C -0.06 -1.58 5.88 -19.86 -0.12 -1.70 16 6 C -0.12 -2.79 9.34 71.24 0.67 -2.12 16 7 C -0.07 -1.83 4.73 -19.86 -0.09 -1.93 16 8 C 0.09 2.05 4.08 85.56 0.35 2.40 16 9 N -0.52 -16.63 3.80 -905.33 -3.44 -20.08 16 10 C 0.16 6.22 3.62 85.56 0.31 6.53 16 11 C -0.50 -25.78 9.05 25.60 0.23 -25.55 16 12 H 0.03 2.07 7.60 -2.91 -0.02 2.05 16 13 C 0.01 0.29 5.47 84.65 0.46 0.75 16 14 N -0.96 -57.48 13.96 21.45 0.30 -57.18 16 15 Si 0.94 39.74 27.44 68.60 1.88 41.62 16 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 17 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.23 -8.58 6.58 99.48 0.65 -7.93 16 19 C 0.08 2.34 5.00 86.31 0.43 2.77 16 20 C -0.07 -1.58 5.07 28.79 0.15 -1.43 16 21 C 0.24 7.03 15.43 89.45 1.38 8.41 16 22 N -0.49 -17.00 18.53 19.99 0.37 -16.63 16 23 C -0.16 -3.66 7.93 22.35 0.18 -3.48 16 24 C 0.07 1.86 6.70 22.57 0.15 2.01 16 25 O -0.33 -8.57 10.28 -79.58 -0.82 -9.39 16 26 C 0.02 0.34 9.81 113.37 1.11 1.45 16 27 H 0.06 0.87 7.66 -2.38 -0.02 0.85 16 28 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 29 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.15 2.85 6.30 -2.91 -0.02 2.84 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 2.18 6.11 -2.39 -0.01 2.16 16 33 H 0.06 1.47 8.10 -2.38 -0.02 1.45 16 34 H 0.09 2.09 6.99 -2.39 -0.02 2.07 16 35 H 0.07 1.25 5.74 -2.39 -0.01 1.24 16 36 H 0.04 1.46 6.95 -2.38 -0.02 1.44 16 37 H 0.01 0.43 5.24 -2.39 -0.01 0.42 16 38 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.08 2.24 6.86 -2.39 -0.02 2.23 16 40 H 0.06 2.21 7.04 -2.39 -0.02 2.19 16 41 H 0.12 2.98 6.11 -2.39 -0.01 2.97 16 42 H 0.14 2.25 6.38 -2.39 -0.02 2.23 16 43 H 0.15 2.69 6.26 -2.91 -0.02 2.67 16 44 H 0.07 0.94 7.68 -2.39 -0.02 0.92 16 45 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.05 0.91 7.65 -2.39 -0.02 0.89 16 Total: -1.00 -70.85 371.46 5.09 -65.76 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.95 Total: 17.41 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 6.66 Total: -12.19 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -2.77 Total: -93.88 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: -1.64 Total: -18.72 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.88 Total: 41.62 kcal Total: -70.85 5.09 -65.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355498693.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.766 kcal (2) G-P(sol) polarization free energy of solvation -70.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds