Wall clock time and date at job start Tue Mar 31 2020 12:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99676 * 2 1 4 4 H 1.48497 * 109.47268 * 269.99874 * 3 2 1 5 5 H 1.48503 * 109.47283 * 29.99930 * 3 2 1 6 6 H 1.48500 * 109.47228 * 150.00139 * 3 2 1 7 7 C 1.37878 * 120.00572 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00260 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99461 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47086 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00320 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99869 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00115 * 179.97438 * 13 11 10 15 15 C 1.50692 * 109.47218 * 179.97438 * 14 13 11 16 16 C 1.38425 * 120.44466 * 260.00136 * 15 14 13 17 17 C 1.38783 * 118.48433 * 180.23295 * 16 15 14 18 18 C 1.38086 * 119.28993 * 359.47576 * 17 16 15 19 19 N 1.31937 * 120.83438 * 0.53436 * 18 17 16 20 20 C 1.32281 * 121.64284 * 359.74423 * 19 18 17 21 21 O 1.35686 * 119.68073 * 179.97438 * 20 19 18 22 22 C 1.42900 * 116.99899 * 359.97423 * 21 20 19 23 23 C 1.54264 * 110.03473 * 267.16773 * 22 21 20 24 24 C 1.54888 * 104.19599 * 217.11018 * 23 22 21 25 25 C 1.54893 * 102.74869 * 37.94082 * 24 23 22 26 26 C 1.53875 * 110.02874 * 150.00024 * 22 21 20 27 27 H 0.96998 * 120.00427 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47190 * 60.00100 * 9 7 2 29 29 H 1.09001 * 109.47266 * 299.99469 * 9 7 2 30 30 H 1.09000 * 109.46972 * 59.99551 * 10 9 7 31 31 H 1.09001 * 109.46760 * 299.99854 * 10 9 7 32 32 H 0.96998 * 119.99850 * 359.97438 * 13 11 10 33 33 H 1.08999 * 109.47108 * 59.99482 * 14 13 11 34 34 H 1.09007 * 109.46912 * 300.00067 * 14 13 11 35 35 H 1.08002 * 120.75304 * 359.95093 * 16 15 14 36 36 H 1.08004 * 120.35639 * 179.75179 * 17 16 15 37 37 H 1.07999 * 119.58897 * 180.30050 * 18 17 16 38 38 H 1.09002 * 110.01702 * 28.61639 * 22 21 20 39 39 H 1.09003 * 110.47968 * 335.78602 * 23 22 21 40 40 H 1.09000 * 110.48710 * 98.42804 * 23 22 21 41 41 H 1.09002 * 110.75597 * 279.62555 * 24 23 22 42 42 H 1.08999 * 110.91537 * 156.32910 * 24 23 22 43 43 H 1.09001 * 110.48162 * 203.38189 * 25 24 23 44 44 H 1.08998 * 110.60190 * 80.79437 * 25 24 23 45 45 H 1.09000 * 110.03382 * 238.57141 * 26 22 21 46 46 H 1.09000 * 110.03251 * 359.95063 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0047 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4920 -4.9671 -0.0001 12 8 0.2792 -4.9672 0.0000 13 7 2.1660 -6.1343 0.0003 14 6 1.4336 -7.4031 0.0003 15 6 2.4129 -8.5484 0.0001 16 6 2.7112 -9.2161 -1.1752 17 6 3.6151 -10.2681 -1.1277 18 6 4.1937 -10.6076 0.0792 19 7 3.8895 -9.9523 1.1832 20 6 3.0286 -8.9479 1.1791 21 8 2.7444 -8.3019 2.3380 22 6 3.4099 -8.7606 3.5164 23 6 2.5389 -9.8070 4.2418 24 6 2.7707 -9.5174 5.7456 25 6 2.8455 -7.9709 5.7883 26 6 3.6048 -7.5932 4.4997 27 1 -0.4851 0.8400 0.0004 28 1 0.6249 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8722 -3.6042 0.8905 31 1 2.8721 -3.6042 -0.8895 32 1 3.1360 -6.1342 0.0006 33 1 0.8072 -7.4610 -0.8899 34 1 0.8066 -7.4607 0.8901 35 1 2.2475 -8.9278 -2.1070 36 1 3.8667 -10.8125 -2.0259 37 1 4.9015 -11.4223 0.1208 38 1 4.3754 -9.1937 3.2550 39 1 1.4881 -9.6727 3.9849 40 1 2.8677 -10.8159 3.9925 41 1 3.7080 -9.9590 6.0841 42 1 1.9358 -9.8805 6.3450 43 1 3.3981 -7.6399 6.6676 44 1 1.8451 -7.5382 5.7824 45 1 4.6648 -7.4604 4.7162 46 1 3.1926 -6.6766 4.0776 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359997594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:42 Heat of formation + Delta-G solvation = -62.499978 kcal Electronic energy + Delta-G solvation = -26222.277137 eV Core-core repulsion = 22497.221304 eV Total energy + Delta-G solvation = -3725.055833 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.08869 -39.11552 -38.82282 -36.49212 -35.05428 -33.39735 -32.51507 -31.20842 -30.62815 -28.99446 -28.14539 -26.89138 -25.15021 -23.72882 -22.48981 -21.34512 -21.02910 -20.50492 -19.60562 -18.74573 -17.20616 -16.91593 -16.18660 -15.89056 -15.77490 -15.51263 -15.23990 -15.04666 -14.83523 -14.38551 -14.13159 -13.64381 -13.61093 -13.35233 -13.15015 -12.99089 -12.85102 -12.19189 -12.15667 -12.03834 -11.73184 -11.40000 -11.35453 -11.11723 -11.09323 -10.92089 -10.90021 -10.74357 -10.57450 -10.17771 -9.90731 -9.83060 -9.61744 -9.16574 -9.02390 -8.70623 -8.58554 -8.28467 -5.92740 -3.96916 0.77756 1.01158 2.82256 3.34162 3.35494 3.36564 3.41441 3.44246 3.85723 3.98182 4.28961 4.31900 4.50580 4.54193 4.59520 4.64892 4.70987 4.91642 5.12471 5.18221 5.18914 5.23351 5.35995 5.37903 5.42046 5.43509 5.61364 5.62800 5.64500 5.76627 5.79980 5.87002 5.92148 5.96215 6.01342 6.05917 6.23078 6.28975 6.30867 6.77270 6.95043 7.10418 7.56577 7.78390 7.91424 7.97035 8.11511 8.42932 8.85852 9.11994 9.66322 11.18215 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012449 B = 0.002921 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.575162 B = 9584.762468 C =11069.324280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.129 4.129 11 C 0.511 3.489 12 O -0.536 6.536 13 N -0.736 5.736 14 C 0.175 3.825 15 C -0.175 4.175 16 C -0.024 4.024 17 C -0.216 4.216 18 C 0.142 3.858 19 N -0.542 5.542 20 C 0.340 3.660 21 O -0.288 6.288 22 C 0.085 3.915 23 C -0.139 4.139 24 C -0.122 4.122 25 C -0.123 4.123 26 C -0.127 4.127 27 H 0.260 0.740 28 H 0.023 0.977 29 H 0.024 0.976 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.395 0.605 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.158 0.842 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.375 -25.919 4.761 28.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.169 4.169 11 C 0.299 3.701 12 O -0.411 6.411 13 N -0.390 5.390 14 C 0.051 3.949 15 C -0.178 4.178 16 C -0.050 4.050 17 C -0.236 4.236 18 C -0.014 4.014 19 N -0.266 5.266 20 C 0.160 3.840 21 O -0.194 6.194 22 C 0.029 3.971 23 C -0.177 4.177 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.164 4.164 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.229 0.771 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.176 0.824 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.510 -25.782 5.640 28.053 hybrid contribution 0.741 0.850 -0.790 1.377 sum 10.251 -24.932 4.850 27.390 Atomic orbital electron populations 1.69998 1.06037 1.26529 1.50289 1.25025 0.94819 0.99188 0.95367 0.86600 0.79786 0.83572 0.78036 1.20704 1.21238 1.19898 1.21232 0.92919 0.91053 1.51246 0.92644 1.18895 0.93172 0.89335 0.98613 1.21856 1.00695 0.91962 1.02396 1.21536 0.88628 0.85502 0.74395 1.90666 1.14439 1.87587 1.48398 1.46206 1.09895 1.05012 1.77914 1.19831 0.91915 0.80200 1.02965 1.20019 1.03844 1.02337 0.91648 1.21454 0.93800 0.92478 0.97283 1.21974 1.01222 1.00586 0.99824 1.22438 0.95809 0.96178 0.86979 1.67324 1.17451 1.09470 1.32321 1.19700 0.89465 0.88335 0.86497 1.86451 1.64125 1.54758 1.14097 1.23118 0.96634 0.94957 0.82416 1.22800 1.00781 0.98768 0.95364 1.22433 1.01856 0.96142 0.95571 1.22345 1.00997 0.95654 0.97095 1.22285 1.01161 0.98494 0.94497 0.92981 0.95841 0.95801 0.90325 0.90367 0.77126 0.90952 0.90526 0.83910 0.84449 0.82449 0.89015 0.90666 0.91059 0.91310 0.91180 0.91209 0.91048 0.90541 0.89814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.75 13.29 55.43 0.74 -27.01 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 1.03 4.26 -27.88 -0.12 0.91 16 10 C -0.13 -2.70 5.64 -27.88 -0.16 -2.86 16 11 C 0.51 10.20 7.83 -10.99 -0.09 10.11 16 12 O -0.54 -12.98 15.98 5.56 0.09 -12.89 16 13 N -0.74 -11.12 5.55 -61.48 -0.34 -11.46 16 14 C 0.18 2.39 5.49 -5.20 -0.03 2.36 16 15 C -0.18 -1.98 5.28 -104.32 -0.55 -2.53 16 16 C -0.02 -0.22 9.81 -39.31 -0.39 -0.60 16 17 C -0.22 -1.59 10.11 -39.44 -0.40 -1.99 16 18 C 0.14 1.15 11.18 -17.56 -0.20 0.96 16 19 N -0.54 -5.81 8.64 -13.33 -0.12 -5.93 16 20 C 0.34 4.05 7.46 -17.12 -0.13 3.92 16 21 O -0.29 -3.64 8.92 -18.76 -0.17 -3.81 16 22 C 0.09 0.89 3.17 -25.61 -0.08 0.81 16 23 C -0.14 -1.29 6.56 -25.07 -0.16 -1.46 16 24 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 25 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 26 C -0.13 -1.23 6.61 -25.61 -0.17 -1.40 16 27 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 28 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 29 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.40 5.11 8.46 -40.82 -0.35 4.76 16 33 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 34 H 0.08 1.17 7.87 -51.92 -0.41 0.76 16 35 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 37 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.09 0.96 6.97 -51.93 -0.36 0.60 16 39 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -35.08 383.86 -9.65 -44.73 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.40 Total: 1.71 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -3.22 Total: -8.00 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.28 Total: -44.40 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.08 Total: -16.70 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.08 -9.65 -44.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359997594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.772 kcal (2) G-P(sol) polarization free energy of solvation -35.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds