Wall clock time and date at job start Tue Mar 31 2020 12:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47059 * 239.99734 * 3 2 1 5 5 H 1.48498 * 109.46747 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47164 * 119.99839 * 3 2 1 7 7 C 1.38953 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00175 * 199.09694 * 7 2 1 9 9 N 1.37092 * 120.00098 * 19.09529 * 7 2 1 10 10 C 1.34776 * 119.99912 * 42.78926 * 9 7 2 11 11 O 1.21294 * 119.99897 * 0.28246 * 10 9 7 12 12 C 1.50699 * 119.99992 * 180.27456 * 10 9 7 13 13 C 1.53005 * 109.47204 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47281 * 180.02562 * 13 12 10 15 15 O 1.42892 * 109.47008 * 179.97438 * 14 13 12 16 16 C 1.35919 * 117.00220 * 180.02562 * 15 14 13 17 17 C 1.39129 * 120.47695 * 179.72504 * 16 15 14 18 18 C 1.38539 * 118.37458 * 179.70983 * 17 16 15 19 19 C 1.38255 * 119.22057 * 0.58535 * 18 17 16 20 20 N 1.31847 * 120.88422 * 359.67245 * 19 18 17 21 21 C 1.31844 * 121.78062 * 0.02876 * 20 19 18 22 22 C 1.46497 * 119.99986 * 223.06710 * 9 7 2 23 23 C 1.54269 * 110.03443 * 59.59464 * 22 9 7 24 24 C 1.54959 * 104.16271 * 217.13320 * 23 22 9 25 25 C 1.54890 * 102.77553 * 37.88923 * 24 23 22 26 26 C 1.53874 * 110.03529 * 302.37385 * 22 9 7 27 27 H 0.97001 * 119.99613 * 354.74146 * 1 2 3 28 28 H 1.09003 * 109.47715 * 300.00308 * 12 10 9 29 29 H 1.09000 * 109.46993 * 60.00694 * 12 10 9 30 30 H 1.09000 * 109.47063 * 300.00159 * 13 12 10 31 31 H 1.08994 * 109.47230 * 59.99907 * 13 12 10 32 32 H 1.09000 * 109.47011 * 299.99958 * 14 13 12 33 33 H 1.09007 * 109.46684 * 59.99632 * 14 13 12 34 34 H 1.08004 * 120.81199 * 359.97438 * 17 16 15 35 35 H 1.08006 * 120.39077 * 180.25666 * 18 17 16 36 36 H 1.07995 * 119.56155 * 179.70479 * 19 18 17 37 37 H 1.08001 * 119.65355 * 179.97438 * 21 20 19 38 38 H 1.09006 * 110.01944 * 180.98355 * 22 9 7 39 39 H 1.08999 * 110.48342 * 335.78880 * 23 22 9 40 40 H 1.09006 * 110.48397 * 98.42653 * 23 22 9 41 41 H 1.08996 * 110.72047 * 279.57752 * 24 23 22 42 42 H 1.09002 * 110.92489 * 156.28921 * 24 23 22 43 43 H 1.09001 * 110.48895 * 203.40644 * 25 24 23 44 44 H 1.08999 * 110.60414 * 80.81750 * 25 24 23 45 45 H 1.08995 * 110.03602 * 238.57141 * 26 22 9 46 46 H 1.09003 * 110.03119 * 0.02562 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0443 -1.2290 0.3066 9 7 1.3799 -2.3581 -0.3873 10 6 0.5740 -2.3564 -1.4676 11 8 0.4092 -1.3343 -2.0996 12 6 -0.1222 -3.6243 -1.8904 13 6 -0.9685 -3.3507 -3.1353 14 6 -1.6759 -4.6378 -3.5642 15 8 -2.4667 -4.3821 -4.7265 16 6 -3.1656 -5.4287 -5.2399 17 6 -3.9635 -5.2594 -6.3669 18 6 -4.6521 -6.3571 -6.8571 19 6 -4.5346 -7.5723 -6.2083 20 7 -3.7738 -7.6977 -5.1388 21 6 -3.0978 -6.6795 -4.6443 22 6 1.5790 -3.5926 0.3760 23 6 1.1194 -3.3918 1.8349 24 6 2.1446 -4.1997 2.6700 25 6 3.4754 -3.9429 1.9202 26 6 3.0763 -3.9433 0.4300 27 1 -0.4849 0.8366 0.0770 28 1 0.6210 -4.3886 -2.1175 29 1 -0.7658 -3.9721 -1.0824 30 1 -1.7118 -2.5863 -2.9086 31 1 -0.3247 -3.0031 -3.9431 32 1 -0.9329 -5.4025 -3.7908 33 1 -2.3198 -4.9850 -2.7560 34 1 -4.0409 -4.2968 -6.8505 35 1 -5.2777 -6.2634 -7.7325 36 1 -5.0727 -8.4305 -6.5828 37 1 -2.4852 -6.8209 -3.7661 38 1 1.0207 -4.4089 -0.0824 39 1 1.1552 -2.3363 2.1042 40 1 0.1140 -3.7886 1.9761 41 1 1.8964 -5.2610 2.6637 42 1 2.1979 -3.8229 3.6914 43 1 4.1886 -4.7415 2.1243 44 1 3.8946 -2.9771 2.2026 45 1 3.2445 -4.9300 -0.0013 46 1 3.6549 -3.1947 -0.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361718008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:21 Heat of formation + Delta-G solvation = -39.721957 kcal Electronic energy + Delta-G solvation = -26463.542963 eV Core-core repulsion = 22739.474858 eV Total energy + Delta-G solvation = -3724.068104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.70136 -38.93332 -38.25868 -36.76689 -33.80844 -33.01415 -32.36586 -31.44543 -30.30712 -28.07010 -27.34534 -26.80632 -24.67150 -23.75366 -23.00446 -21.41598 -20.09665 -19.81503 -18.98348 -18.25415 -17.00606 -16.69826 -16.34550 -16.17829 -15.88691 -14.92851 -14.76052 -14.61730 -14.41059 -14.16248 -13.75713 -13.59727 -13.42367 -13.17081 -12.77251 -12.50699 -12.46949 -12.16930 -11.77141 -11.51817 -11.23546 -11.07715 -10.90890 -10.79308 -10.71741 -10.61288 -10.47976 -10.46481 -10.34886 -10.17225 -10.02979 -9.89292 -9.76267 -9.62206 -8.69146 -8.58892 -7.99838 -7.02777 -6.06735 -3.78606 0.92199 1.11823 3.00944 3.32466 3.39770 3.43386 3.62129 4.21814 4.31094 4.41478 4.50783 4.65948 4.82452 4.89893 5.04163 5.10363 5.17411 5.21716 5.24617 5.30442 5.34908 5.42952 5.52674 5.70059 5.79758 5.83311 5.88755 5.89425 5.97868 6.06809 6.14801 6.16675 6.23725 6.30891 6.35639 6.43550 6.48348 6.53132 6.61882 6.69046 6.81562 6.96270 7.18927 7.21685 7.68556 7.76009 8.33426 9.12655 9.23792 9.74130 10.36880 11.02768 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.002917 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.406369 B = 9595.711014 C =11040.365759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.073 3.927 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.343 4.343 8 H 0.076 0.924 9 N -0.449 5.449 10 C 0.475 3.525 11 O -0.535 6.535 12 C -0.131 4.131 13 C -0.096 4.096 14 C 0.057 3.943 15 O -0.305 6.305 16 C 0.089 3.911 17 C -0.114 4.114 18 C -0.133 4.133 19 C 0.050 3.950 20 N -0.451 5.451 21 C 0.013 3.987 22 C 0.129 3.871 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.131 4.131 27 H 0.263 0.737 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.159 0.841 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.445 -13.647 -5.350 15.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.137 4.137 3 Si 0.736 3.264 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.205 1.205 7 C -0.469 4.469 8 H 0.094 0.906 9 N -0.171 5.171 10 C 0.262 3.738 11 O -0.413 6.413 12 C -0.172 4.172 13 C -0.134 4.134 14 C -0.018 4.018 15 O -0.217 6.217 16 C 0.040 3.960 17 C -0.141 4.141 18 C -0.152 4.152 19 C -0.107 4.107 20 N -0.160 5.160 21 C -0.145 4.145 22 C 0.024 3.976 23 C -0.164 4.164 24 C -0.161 4.161 25 C -0.155 4.155 26 C -0.169 4.169 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.613 -13.567 -5.397 15.312 hybrid contribution 0.288 1.398 -0.112 1.432 sum -4.325 -12.169 -5.508 14.040 Atomic orbital electron populations 1.69811 1.06486 1.27298 1.43027 1.25186 0.94736 0.99193 0.94604 0.86345 0.79346 0.82364 0.78351 1.20098 1.21364 1.20543 1.18752 0.94882 0.84080 1.49234 0.90589 1.43376 1.44038 1.07365 1.22317 1.19708 0.83509 0.88709 0.81857 1.90531 1.62768 1.33764 1.54223 1.21503 0.99071 0.99278 0.97306 1.21192 0.99353 0.94857 0.98020 1.23095 0.93267 1.00329 0.85114 1.86142 1.58181 1.33018 1.44319 1.20161 0.93102 0.88450 0.94257 1.21001 0.97108 1.00640 0.95334 1.22008 0.99380 0.93081 1.00761 1.22627 0.97978 0.97308 0.92835 1.67518 1.05288 1.32167 1.11064 1.22991 1.01581 0.88214 1.01694 1.21696 0.94498 0.88819 0.92583 1.22661 0.96788 1.02255 0.94653 1.22450 0.95931 0.99177 0.98514 1.22259 0.96786 1.00893 0.95559 1.22457 0.97583 1.00458 0.96448 0.92740 0.90849 0.90643 0.90052 0.90406 0.91878 0.91805 0.83976 0.84220 0.82710 0.82358 0.91564 0.89108 0.93069 0.92551 0.92379 0.92952 0.91614 0.92972 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.17 11.67 55.50 0.65 -23.52 16 2 C 0.07 2.02 4.35 -17.47 -0.08 1.94 16 3 Si 0.91 21.82 29.60 -169.99 -5.03 16.79 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.34 -9.01 7.45 -14.93 -0.11 -9.12 16 8 H 0.08 1.95 7.08 -52.48 -0.37 1.58 16 9 N -0.45 -10.63 2.46 -106.54 -0.26 -10.90 16 10 C 0.48 11.52 6.96 -10.99 -0.08 11.44 16 11 O -0.53 -15.34 13.65 5.54 0.08 -15.27 16 12 C -0.13 -2.33 4.01 -27.88 -0.11 -2.44 16 13 C -0.10 -1.62 4.87 -26.73 -0.13 -1.75 16 14 C 0.06 0.74 4.75 37.16 0.18 0.92 16 15 O -0.30 -4.36 10.15 -19.48 -0.20 -4.56 16 16 C 0.09 1.13 6.71 -39.08 -0.26 0.87 16 17 C -0.11 -1.23 10.13 -39.14 -0.40 -1.63 16 18 C -0.13 -1.17 10.11 -39.46 -0.40 -1.57 16 19 C 0.05 0.49 11.18 -17.54 -0.20 0.30 16 20 N -0.45 -5.57 10.36 -13.13 -0.14 -5.71 16 21 C 0.01 0.16 10.22 -17.37 -0.18 -0.02 16 22 C 0.13 2.42 3.20 -66.81 -0.21 2.21 16 23 C -0.13 -2.27 6.42 -25.03 -0.16 -2.43 16 24 C -0.12 -1.79 6.91 -24.70 -0.17 -1.96 16 25 C -0.12 -1.75 6.83 -25.07 -0.17 -1.92 16 26 C -0.13 -2.18 6.20 -25.61 -0.16 -2.34 16 27 H 0.26 7.41 8.32 -40.82 -0.34 7.07 16 28 H 0.07 1.12 7.77 -51.93 -0.40 0.71 16 29 H 0.08 1.25 7.82 -51.93 -0.41 0.84 16 30 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 31 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 32 H 0.06 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.06 0.75 7.68 -51.92 -0.40 0.35 16 34 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.14 0.78 8.06 -52.48 -0.42 0.35 16 36 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.16 1.69 6.32 -52.49 -0.33 1.35 16 38 H 0.07 1.10 5.83 -51.93 -0.30 0.80 16 39 H 0.09 1.98 7.10 -51.93 -0.37 1.61 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.07 1.42 6.85 -51.93 -0.36 1.06 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -32.85 371.17 -9.06 -41.91 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -7.12 Total: 3.14 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.64 Total: -7.49 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.25 Total: -40.12 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.12 Total: -19.83 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.85 -9.06 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.191 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds