Wall clock time and date at job start Tue Mar 31 2020 12:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 120.00341 * 2 1 4 4 H 1.48498 * 109.47059 * 239.99734 * 3 2 1 5 5 H 1.48498 * 109.46747 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47164 * 119.99839 * 3 2 1 7 7 C 1.38953 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00175 * 199.09694 * 7 2 1 9 9 N 1.37092 * 120.00098 * 19.09529 * 7 2 1 10 10 C 1.34776 * 119.99912 * 42.78926 * 9 7 2 11 11 O 1.21294 * 119.99897 * 0.28246 * 10 9 7 12 12 C 1.50699 * 119.99992 * 180.27456 * 10 9 7 13 13 C 1.53005 * 109.47204 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47281 * 180.02562 * 13 12 10 15 15 O 1.42892 * 109.47008 * 179.97438 * 14 13 12 16 16 C 1.35919 * 117.00220 * 180.02562 * 15 14 13 17 17 C 1.39129 * 120.47695 * 179.72504 * 16 15 14 18 18 C 1.38539 * 118.37458 * 179.70983 * 17 16 15 19 19 C 1.38255 * 119.22057 * 0.58535 * 18 17 16 20 20 N 1.31847 * 120.88422 * 359.67245 * 19 18 17 21 21 C 1.31844 * 121.78062 * 0.02876 * 20 19 18 22 22 C 1.46497 * 119.99986 * 223.06710 * 9 7 2 23 23 C 1.54269 * 110.03443 * 59.59464 * 22 9 7 24 24 C 1.54959 * 104.16271 * 217.13320 * 23 22 9 25 25 C 1.54890 * 102.77553 * 37.88923 * 24 23 22 26 26 C 1.53874 * 110.03529 * 302.37385 * 22 9 7 27 27 H 0.97001 * 119.99613 * 354.74146 * 1 2 3 28 28 H 1.09003 * 109.47715 * 300.00308 * 12 10 9 29 29 H 1.09000 * 109.46993 * 60.00694 * 12 10 9 30 30 H 1.09000 * 109.47063 * 300.00159 * 13 12 10 31 31 H 1.08994 * 109.47230 * 59.99907 * 13 12 10 32 32 H 1.09000 * 109.47011 * 299.99958 * 14 13 12 33 33 H 1.09007 * 109.46684 * 59.99632 * 14 13 12 34 34 H 1.08004 * 120.81199 * 359.97438 * 17 16 15 35 35 H 1.08006 * 120.39077 * 180.25666 * 18 17 16 36 36 H 1.07995 * 119.56155 * 179.70479 * 19 18 17 37 37 H 1.08001 * 119.65355 * 179.97438 * 21 20 19 38 38 H 1.09006 * 110.01944 * 180.98355 * 22 9 7 39 39 H 1.08999 * 110.48342 * 335.78880 * 23 22 9 40 40 H 1.09006 * 110.48397 * 98.42653 * 23 22 9 41 41 H 1.08996 * 110.72047 * 279.57752 * 24 23 22 42 42 H 1.09002 * 110.92489 * 156.28921 * 24 23 22 43 43 H 1.09001 * 110.48895 * 203.40644 * 25 24 23 44 44 H 1.08999 * 110.60414 * 80.81750 * 25 24 23 45 45 H 1.08995 * 110.03602 * 238.57141 * 26 22 9 46 46 H 1.09003 * 110.03119 * 0.02562 * 26 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1020 1.6963 -1.2125 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0443 -1.2290 0.3066 9 7 1.3799 -2.3581 -0.3873 10 6 0.5740 -2.3564 -1.4676 11 8 0.4092 -1.3343 -2.0996 12 6 -0.1222 -3.6243 -1.8904 13 6 -0.9685 -3.3507 -3.1353 14 6 -1.6759 -4.6378 -3.5642 15 8 -2.4667 -4.3821 -4.7265 16 6 -3.1656 -5.4287 -5.2399 17 6 -3.9635 -5.2594 -6.3669 18 6 -4.6521 -6.3571 -6.8571 19 6 -4.5346 -7.5723 -6.2083 20 7 -3.7738 -7.6977 -5.1388 21 6 -3.0978 -6.6795 -4.6443 22 6 1.5790 -3.5926 0.3760 23 6 1.1194 -3.3918 1.8349 24 6 2.1446 -4.1997 2.6700 25 6 3.4754 -3.9429 1.9202 26 6 3.0763 -3.9433 0.4300 27 1 -0.4849 0.8366 0.0770 28 1 0.6210 -4.3886 -2.1175 29 1 -0.7658 -3.9721 -1.0824 30 1 -1.7118 -2.5863 -2.9086 31 1 -0.3247 -3.0031 -3.9431 32 1 -0.9329 -5.4025 -3.7908 33 1 -2.3198 -4.9850 -2.7560 34 1 -4.0409 -4.2968 -6.8505 35 1 -5.2777 -6.2634 -7.7325 36 1 -5.0727 -8.4305 -6.5828 37 1 -2.4852 -6.8209 -3.7661 38 1 1.0207 -4.4089 -0.0824 39 1 1.1552 -2.3363 2.1042 40 1 0.1140 -3.7886 1.9761 41 1 1.8964 -5.2610 2.6637 42 1 2.1979 -3.8229 3.6914 43 1 4.1886 -4.7415 2.1243 44 1 3.8946 -2.9771 2.2026 45 1 3.2445 -4.9300 -0.0013 46 1 3.6549 -3.1947 -0.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361718008.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:19 Heat of formation + Delta-G solvation = -59.469890 kcal Electronic energy + Delta-G solvation = -26464.399297 eV Core-core repulsion = 22739.474858 eV Total energy + Delta-G solvation = -3724.924439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.56490 -40.60353 -39.23148 -38.32603 -35.41026 -34.60179 -33.44936 -33.12120 -31.19305 -29.40500 -28.80143 -28.25280 -26.28843 -24.76680 -23.97397 -22.68428 -21.37655 -21.33554 -20.65364 -19.27775 -18.26510 -17.69460 -17.52343 -17.45870 -17.36673 -16.70760 -16.18841 -15.91273 -15.71611 -15.37098 -15.14204 -14.76501 -14.67116 -14.16431 -14.11693 -13.91676 -13.84993 -13.29788 -13.20784 -12.96705 -12.84011 -12.71771 -12.49493 -12.32962 -12.25390 -12.17758 -12.06235 -11.80216 -11.74651 -11.66428 -11.32532 -11.24628 -10.69987 -10.67642 -10.44549 -9.93721 -9.46133 -8.97522 -8.15071 -5.87221 0.14375 0.29436 1.35417 1.44152 1.46606 2.03282 2.31552 2.54899 2.82477 3.23059 3.29666 3.55895 3.67648 3.84874 3.91376 3.92962 3.99294 4.01796 4.08647 4.13944 4.25751 4.34228 4.50033 4.51033 4.56009 4.58420 4.65584 4.74058 4.78960 4.86676 4.91654 4.98180 5.02446 5.12090 5.14470 5.17062 5.22202 5.28848 5.33197 5.47785 5.59598 5.61004 5.62321 5.72744 6.25561 6.29179 6.96339 7.12315 7.31237 7.81757 8.46929 8.94385 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015277 B = 0.002917 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.406369 B = 9595.711014 C =11040.365759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.021 3.979 3 Si 0.959 3.041 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.259 1.259 7 C -0.342 4.342 8 H 0.076 0.924 9 N -0.461 5.461 10 C 0.455 3.545 11 O -0.593 6.593 12 C -0.117 4.117 13 C -0.087 4.087 14 C 0.067 3.933 15 O -0.328 6.328 16 C 0.064 3.936 17 C -0.125 4.125 18 C -0.121 4.121 19 C 0.048 3.952 20 N -0.476 5.476 21 C 0.003 3.997 22 C 0.119 3.881 23 C -0.126 4.126 24 C -0.110 4.110 25 C -0.115 4.115 26 C -0.127 4.127 27 H 0.255 0.745 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.150 0.850 35 H 0.177 0.823 36 H 0.186 0.814 37 H 0.169 0.831 38 H 0.095 0.905 39 H 0.043 0.957 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.085 0.915 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -17.101 -5.466 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.184 4.184 3 Si 0.786 3.214 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.183 1.183 7 C -0.470 4.470 8 H 0.093 0.907 9 N -0.182 5.182 10 C 0.244 3.756 11 O -0.475 6.475 12 C -0.157 4.157 13 C -0.126 4.126 14 C -0.008 4.008 15 O -0.241 6.241 16 C 0.017 3.983 17 C -0.152 4.152 18 C -0.141 4.141 19 C -0.110 4.110 20 N -0.186 5.186 21 C -0.154 4.154 22 C 0.015 3.985 23 C -0.165 4.165 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.166 4.166 27 H 0.064 0.936 28 H 0.128 0.872 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.203 0.797 37 H 0.186 0.814 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.076 0.924 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.501 -17.057 -5.471 18.470 hybrid contribution 0.241 2.384 -0.156 2.401 sum -4.260 -14.673 -5.627 16.282 Atomic orbital electron populations 1.69926 1.07775 1.27132 1.45649 1.25922 0.95378 1.02184 0.94954 0.85532 0.78236 0.79089 0.78573 1.21009 1.21776 1.18324 1.18945 0.94967 0.85406 1.47679 0.90684 1.43657 1.43467 1.08288 1.22808 1.20836 0.83170 0.90200 0.81344 1.90490 1.64579 1.36410 1.56004 1.21392 0.99712 0.96576 0.98007 1.20999 0.98295 0.96120 0.97153 1.22928 0.93959 0.98226 0.85675 1.86080 1.58954 1.34293 1.44789 1.20385 0.94193 0.88355 0.95407 1.21348 0.96972 1.01882 0.94989 1.22398 0.98547 0.91855 1.01269 1.23247 0.97049 0.98751 0.91920 1.67558 1.06276 1.32393 1.12361 1.23135 1.02030 0.88039 1.02188 1.22063 0.96668 0.87299 0.92427 1.22590 0.98581 1.00124 0.95155 1.22414 0.94076 1.00261 0.98052 1.22255 0.97648 1.01110 0.94212 1.22428 0.95271 1.01220 0.97647 0.93626 0.87214 0.88763 0.93547 0.92412 0.89380 0.90166 0.83189 0.80551 0.79703 0.81404 0.88698 0.93766 0.92376 0.89435 0.91633 0.89692 0.93633 0.89631 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.02 11.67 21.66 0.25 -52.77 16 2 C 0.02 1.23 4.35 84.93 0.37 1.60 16 3 Si 0.96 46.48 29.60 68.60 2.03 48.51 16 4 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.34 -18.57 7.45 84.04 0.63 -17.94 16 8 H 0.08 3.98 7.08 -2.91 -0.02 3.96 16 9 N -0.46 -22.15 2.46 -609.37 -1.50 -23.65 16 10 C 0.46 22.60 6.96 87.66 0.61 23.21 16 11 O -0.59 -35.74 13.65 -3.07 -0.04 -35.78 16 12 C -0.12 -4.04 4.01 29.85 0.12 -3.92 16 13 C -0.09 -3.00 4.87 30.60 0.15 -2.86 16 14 C 0.07 1.68 4.75 71.98 0.34 2.02 16 15 O -0.33 -9.37 10.15 -92.63 -0.94 -10.31 16 16 C 0.06 1.58 6.71 22.60 0.15 1.73 16 17 C -0.13 -2.53 10.13 22.56 0.23 -2.30 16 18 C -0.12 -1.80 10.11 22.35 0.23 -1.57 16 19 C 0.05 0.81 11.18 84.69 0.95 1.76 16 20 N -0.48 -10.83 10.36 -195.44 -2.02 -12.86 16 21 C 0.00 0.07 10.22 84.80 0.87 0.94 16 22 C 0.12 4.29 3.20 45.72 0.15 4.44 16 23 C -0.13 -4.44 6.42 31.69 0.20 -4.24 16 24 C -0.11 -2.88 6.91 31.91 0.22 -2.66 16 25 C -0.11 -3.10 6.83 31.67 0.22 -2.88 16 26 C -0.13 -3.94 6.20 31.32 0.19 -3.74 16 27 H 0.25 15.21 8.32 -92.71 -0.77 14.44 16 28 H 0.11 3.01 7.77 -2.39 -0.02 2.99 16 29 H 0.09 2.93 7.82 -2.39 -0.02 2.91 16 30 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 31 H 0.06 2.17 8.10 -2.39 -0.02 2.16 16 32 H 0.09 1.78 7.68 -2.39 -0.02 1.76 16 33 H 0.08 1.75 7.68 -2.38 -0.02 1.73 16 34 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 35 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.19 1.83 8.06 -2.91 -0.02 1.81 16 37 H 0.17 3.28 6.32 -2.91 -0.02 3.26 16 38 H 0.10 2.84 5.83 -2.38 -0.01 2.83 16 39 H 0.04 1.97 7.10 -2.39 -0.02 1.96 16 40 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.05 1.70 6.85 -2.39 -0.02 1.68 16 Total: -1.00 -77.51 371.17 4.36 -73.15 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.96 Total: 20.14 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: 5.62 Total: -6.43 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -3.27 Total: -89.28 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -0.98 Total: -46.09 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -77.51 4.36 -73.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361718008.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.680 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds