Wall clock time and date at job start Tue Mar 31 2020 12:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48510 * 109.47005 * 275.00654 * 3 2 1 5 5 H 1.48499 * 109.47249 * 35.00514 * 3 2 1 6 6 H 1.48498 * 109.46960 * 155.00949 * 3 2 1 7 7 C 1.37871 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00446 * 355.30520 * 7 2 1 9 9 C 1.50708 * 119.99810 * 175.58558 * 7 2 1 10 10 C 1.53000 * 115.55015 * 95.23536 * 9 7 2 11 11 N 1.46901 * 109.46946 * 305.54551 * 10 9 7 12 12 C 1.46899 * 110.99909 * 185.39173 * 11 10 9 13 13 C 1.53041 * 109.45913 * 278.97520 * 12 11 10 14 14 C 1.53191 * 109.31042 * 178.60240 * 13 12 11 15 15 N 1.46920 * 108.76688 * 54.65791 * 14 13 12 16 16 C 1.34779 * 120.63013 * 126.40366 * 15 14 13 17 17 O 1.21620 * 119.99740 * 181.99186 * 16 15 14 18 18 C 1.47380 * 120.00115 * 1.99429 * 16 15 14 19 19 C 1.47013 * 127.19027 * 206.33601 * 18 16 15 20 20 C 1.34179 * 105.95369 * 179.97438 * 19 18 16 21 21 O 1.34217 * 109.12414 * 0.02562 * 20 19 18 22 22 C 1.33651 * 110.90683 * 359.71857 * 21 20 19 23 23 C 1.46929 * 118.73804 * 306.38239 * 15 14 13 24 24 C 1.53045 * 109.46026 * 158.92340 * 12 11 10 25 25 C 1.52998 * 117.49638 * 309.56040 * 9 7 2 26 26 C 1.53000 * 117.49387 * 240.90321 * 9 7 2 27 27 H 0.97010 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47442 * 65.54555 * 10 9 7 29 29 H 1.08993 * 109.46815 * 185.54988 * 10 9 7 30 30 H 1.00900 * 111.00155 * 61.43321 * 11 10 9 31 31 H 1.08992 * 109.45783 * 38.95260 * 12 11 10 32 32 H 1.08993 * 109.49818 * 298.57052 * 13 12 11 33 33 H 1.09000 * 109.49246 * 58.66849 * 13 12 11 34 34 H 1.09003 * 109.59786 * 294.87027 * 14 13 12 35 35 H 1.09005 * 109.58212 * 174.44153 * 14 13 12 36 36 H 1.07998 * 127.02652 * 0.02562 * 19 18 16 37 37 H 1.07999 * 125.43813 * 179.97438 * 20 19 18 38 38 H 1.07996 * 125.80238 * 180.28911 * 22 21 20 39 39 H 1.09000 * 109.58687 * 293.81897 * 23 15 14 40 40 H 1.09002 * 109.69988 * 173.46234 * 23 15 14 41 41 H 1.09005 * 109.49420 * 301.33911 * 24 12 11 42 42 H 1.09007 * 109.49326 * 61.43278 * 24 12 11 43 43 H 1.08998 * 117.50116 * 0.02562 * 25 9 7 44 44 H 1.08997 * 117.49903 * 145.02262 * 25 9 7 45 45 H 1.09002 * 117.49278 * 214.98057 * 26 9 7 46 46 H 1.08997 * 117.50510 * 359.97223 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3908 2.1075 -1.3948 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4119 0.5915 7 6 2.0045 -1.1940 -0.0005 8 1 1.4672 -2.1278 0.0756 9 6 3.5082 -1.1959 -0.1010 10 6 4.2584 -1.2703 1.2304 11 7 3.8022 -0.1864 2.1107 12 6 4.5904 -0.1475 3.3497 13 6 4.0594 -1.2004 4.3251 14 6 4.9057 -1.1807 5.6019 15 7 4.9190 0.1867 6.1391 16 6 4.5646 0.4259 7.4172 17 8 4.5450 1.5662 7.8396 18 6 4.2009 -0.6944 8.3031 19 6 3.3160 -0.6486 9.4762 20 6 3.2832 -1.8988 9.9624 21 8 4.0579 -2.6872 9.2011 22 6 4.6106 -1.9917 8.2025 23 6 5.3266 1.2884 5.2565 24 6 4.4758 1.2409 3.9835 25 6 4.1421 -0.3729 -1.2242 26 6 4.1347 -1.9014 -1.3054 27 1 -0.4851 0.8401 0.0004 28 1 4.0613 -2.2314 1.7053 29 1 5.3284 -1.1664 1.0507 30 1 2.8172 -0.2738 2.3113 31 1 5.6354 -0.3575 3.1220 32 1 3.0218 -0.9766 4.5726 33 1 4.1195 -2.1863 3.8642 34 1 5.9242 -1.4923 5.3703 35 1 4.4725 -1.8582 6.3378 36 1 2.7975 0.2147 9.8663 37 1 2.7235 -2.2192 10.8287 38 1 5.2712 -2.3888 7.4460 39 1 6.3794 1.1782 4.9968 40 1 5.1730 2.2412 5.7632 41 1 4.8323 1.9927 3.2793 42 1 3.4341 1.4414 4.2343 43 1 3.4717 0.1703 -1.8902 44 1 5.0939 0.1154 -1.0148 45 1 5.0817 -2.4182 -1.1493 46 1 3.4595 -2.3646 -2.0248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366654758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:14 Heat of formation + Delta-G solvation = 32.378948 kcal Electronic energy + Delta-G solvation = -27204.149096 eV Core-core repulsion = 23483.207522 eV Total energy + Delta-G solvation = -3720.941575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.86967 -40.13683 -38.05365 -36.90072 -34.61185 -33.26900 -32.01915 -31.62143 -30.59006 -29.75016 -26.34762 -25.32658 -24.02154 -23.56693 -22.30455 -21.71125 -21.49708 -20.69823 -19.73879 -18.78546 -17.79191 -16.94438 -16.38500 -16.28780 -16.00252 -15.30110 -14.97775 -14.84066 -14.67322 -14.40407 -14.08233 -13.71008 -13.65533 -13.34741 -13.20940 -12.75687 -12.67482 -12.49268 -12.32524 -12.21935 -11.74773 -11.53926 -11.30290 -11.02866 -10.76291 -10.54977 -10.37659 -10.27259 -10.17957 -9.98200 -9.84064 -9.47006 -9.06156 -8.99015 -8.81209 -8.60091 -8.40267 -7.38886 -6.04114 -4.11203 1.10137 1.82784 2.56268 2.81128 3.12052 3.47117 3.59216 3.88499 4.22662 4.32926 4.52959 4.60819 4.63766 4.67538 4.93707 4.96541 5.07692 5.11149 5.19610 5.27446 5.30751 5.36941 5.43233 5.54716 5.59329 5.70158 5.74362 5.82647 5.91794 5.97726 6.01838 6.11097 6.17780 6.24023 6.35514 6.40495 6.46965 6.53989 6.54859 6.65589 6.78547 7.06643 7.17216 7.22956 7.77498 7.85394 8.03222 8.12173 8.52906 8.95194 9.59760 11.05454 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.003295 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.649257 B = 8496.620665 C = 8649.530480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.081 3.919 3 Si 0.862 3.138 4 H -0.298 1.298 5 H -0.305 1.305 6 H -0.195 1.195 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.010 3.990 10 C 0.103 3.897 11 N -0.669 5.669 12 C 0.087 3.913 13 C -0.167 4.167 14 C 0.087 3.913 15 N -0.603 5.603 16 C 0.587 3.413 17 O -0.539 6.539 18 C -0.227 4.227 19 C -0.167 4.167 20 C -0.039 4.039 21 O -0.175 6.175 22 C 0.005 3.995 23 C 0.115 3.885 24 C -0.125 4.125 25 C -0.194 4.194 26 C -0.188 4.188 27 H 0.263 0.737 28 H 0.022 0.978 29 H 0.046 0.954 30 H 0.356 0.644 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.159 0.841 37 H 0.209 0.791 38 H 0.222 0.778 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.868 -4.367 16.717 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.122 4.122 3 Si 0.690 3.310 4 H -0.226 1.226 5 H -0.233 1.233 6 H -0.117 1.117 7 C -0.535 4.535 8 H 0.089 0.911 9 C 0.008 3.992 10 C -0.027 4.027 11 N -0.301 5.301 12 C -0.024 4.024 13 C -0.207 4.207 14 C -0.036 4.036 15 N -0.336 5.336 16 C 0.376 3.624 17 O -0.418 6.418 18 C -0.232 4.232 19 C -0.187 4.187 20 C -0.105 4.105 21 O -0.070 6.070 22 C -0.064 4.064 23 C -0.007 4.007 24 C -0.163 4.163 25 C -0.231 4.231 26 C -0.226 4.226 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.177 0.823 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.113 0.887 36 H 0.176 0.824 37 H 0.226 0.774 38 H 0.238 0.762 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.087 0.913 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.109 -3.461 16.671 20.894 hybrid contribution -0.319 0.282 0.146 0.451 sum 11.790 -3.178 16.817 20.783 Atomic orbital electron populations 1.69939 1.06854 1.27259 1.49790 1.25023 0.94484 0.99558 0.93107 0.87191 0.84837 0.81864 0.77139 1.22614 1.23337 1.11672 1.20227 0.86822 0.94290 1.52140 0.91115 1.19357 0.95054 0.98943 0.85798 1.21483 0.96378 0.90970 0.93822 1.60816 1.09066 1.47601 1.12606 1.21566 0.98227 0.93268 0.89341 1.22739 1.00569 1.01621 0.95766 1.22366 1.00819 0.83276 0.97117 1.47970 1.66526 1.08778 1.10374 1.17329 0.76488 0.87589 0.81025 1.90777 1.53588 1.22498 1.74888 1.21521 1.06645 0.94123 1.00905 1.22781 1.01610 0.98406 0.95893 1.23966 0.98584 0.89445 0.98474 1.83824 1.49741 1.39775 1.33681 1.25012 0.99699 0.90213 0.91509 1.21677 0.98142 0.90559 0.90335 1.21929 1.00850 0.98159 0.95394 1.22862 1.01221 0.93256 1.05778 1.22880 1.00869 0.94277 1.04526 0.92777 0.95963 0.93538 0.82262 0.90881 0.91006 0.90305 0.90883 0.88717 0.82369 0.77448 0.76227 0.91357 0.88861 0.89788 0.91441 0.89970 0.90919 0.91329 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 2 C 0.08 2.26 5.20 -17.82 -0.09 2.17 16 3 Si 0.86 21.17 23.16 -169.99 -3.94 17.23 16 4 H -0.30 -7.58 7.07 56.52 0.40 -7.18 16 5 H -0.31 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.20 -4.38 5.04 56.52 0.28 -4.10 16 7 C -0.50 -13.29 8.69 -34.44 -0.30 -13.59 16 8 H 0.07 2.10 8.06 -52.49 -0.42 1.67 16 9 C 0.01 0.21 1.37 -155.66 -0.21 0.00 16 10 C 0.10 1.89 5.42 -3.82 -0.02 1.87 16 11 N -0.67 -12.05 3.24 -106.69 -0.35 -12.39 16 12 C 0.09 1.20 2.42 -67.67 -0.16 1.04 16 13 C -0.17 -2.02 5.34 -26.61 -0.14 -2.16 16 14 C 0.09 0.83 5.38 -3.71 -0.02 0.81 16 15 N -0.60 -7.22 2.97 -174.05 -0.52 -7.73 16 16 C 0.59 8.15 7.68 -12.54 -0.10 8.05 16 17 O -0.54 -9.36 16.48 5.26 0.09 -9.28 16 18 C -0.23 -2.62 5.90 -103.28 -0.61 -3.23 16 19 C -0.17 -1.72 11.10 -37.46 -0.42 -2.14 16 20 C -0.04 -0.30 12.03 29.30 0.35 0.05 16 21 O -0.18 -1.55 10.52 7.65 0.08 -1.46 16 22 C 0.01 0.04 9.83 30.08 0.30 0.34 16 23 C 0.12 1.39 6.43 -3.71 -0.02 1.36 16 24 C -0.12 -1.70 5.69 -26.61 -0.15 -1.85 16 25 C -0.19 -4.09 7.24 -26.69 -0.19 -4.28 16 26 C -0.19 -3.73 9.96 -26.69 -0.27 -3.99 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.02 0.40 7.32 -51.93 -0.38 0.02 16 29 H 0.05 0.78 7.88 -51.93 -0.41 0.37 16 30 H 0.36 7.26 7.00 -39.29 -0.28 6.98 16 31 H 0.07 0.94 7.78 -51.93 -0.40 0.54 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 0.93 7.28 -51.93 -0.38 0.55 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.77 3.56 -51.93 -0.18 0.58 16 36 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 37 H 0.21 0.80 8.06 -52.49 -0.42 0.37 16 38 H 0.22 1.22 5.87 -52.49 -0.31 0.91 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 43 H 0.08 1.89 6.54 -51.93 -0.34 1.55 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 46 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 357.06 15.07 5.38 5.38 Total: -1.00 -33.26 357.06 -7.48 -40.75 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.95 Total: 9.42 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -2.06 Total: -15.55 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -0.09 Total: -46.49 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.17 Total: -10.74 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -3.94 Total: 17.23 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.26 -7.48 -40.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366654758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.125 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds