Wall clock time and date at job start Tue Mar 31 2020 12:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99907 * 2 1 4 4 H 1.48510 * 109.47005 * 275.00654 * 3 2 1 5 5 H 1.48499 * 109.47249 * 35.00514 * 3 2 1 6 6 H 1.48498 * 109.46960 * 155.00949 * 3 2 1 7 7 C 1.37871 * 119.99822 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00446 * 355.30520 * 7 2 1 9 9 C 1.50708 * 119.99810 * 175.58558 * 7 2 1 10 10 C 1.53000 * 115.55015 * 95.23536 * 9 7 2 11 11 N 1.46901 * 109.46946 * 305.54551 * 10 9 7 12 12 C 1.46899 * 110.99909 * 185.39173 * 11 10 9 13 13 C 1.53041 * 109.45913 * 278.97520 * 12 11 10 14 14 C 1.53191 * 109.31042 * 178.60240 * 13 12 11 15 15 N 1.46920 * 108.76688 * 54.65791 * 14 13 12 16 16 C 1.34779 * 120.63013 * 126.40366 * 15 14 13 17 17 O 1.21620 * 119.99740 * 181.99186 * 16 15 14 18 18 C 1.47380 * 120.00115 * 1.99429 * 16 15 14 19 19 C 1.47013 * 127.19027 * 206.33601 * 18 16 15 20 20 C 1.34179 * 105.95369 * 179.97438 * 19 18 16 21 21 O 1.34217 * 109.12414 * 0.02562 * 20 19 18 22 22 C 1.33651 * 110.90683 * 359.71857 * 21 20 19 23 23 C 1.46929 * 118.73804 * 306.38239 * 15 14 13 24 24 C 1.53045 * 109.46026 * 158.92340 * 12 11 10 25 25 C 1.52998 * 117.49638 * 309.56040 * 9 7 2 26 26 C 1.53000 * 117.49387 * 240.90321 * 9 7 2 27 27 H 0.97010 * 120.00069 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.47442 * 65.54555 * 10 9 7 29 29 H 1.08993 * 109.46815 * 185.54988 * 10 9 7 30 30 H 1.00900 * 111.00155 * 61.43321 * 11 10 9 31 31 H 1.08992 * 109.45783 * 38.95260 * 12 11 10 32 32 H 1.08993 * 109.49818 * 298.57052 * 13 12 11 33 33 H 1.09000 * 109.49246 * 58.66849 * 13 12 11 34 34 H 1.09003 * 109.59786 * 294.87027 * 14 13 12 35 35 H 1.09005 * 109.58212 * 174.44153 * 14 13 12 36 36 H 1.07998 * 127.02652 * 0.02562 * 19 18 16 37 37 H 1.07999 * 125.43813 * 179.97438 * 20 19 18 38 38 H 1.07996 * 125.80238 * 180.28911 * 22 21 20 39 39 H 1.09000 * 109.58687 * 293.81897 * 23 15 14 40 40 H 1.09002 * 109.69988 * 173.46234 * 23 15 14 41 41 H 1.09005 * 109.49420 * 301.33911 * 24 12 11 42 42 H 1.09007 * 109.49326 * 61.43278 * 24 12 11 43 43 H 1.08998 * 117.50116 * 0.02562 * 25 9 7 44 44 H 1.08997 * 117.49903 * 145.02262 * 25 9 7 45 45 H 1.09002 * 117.49278 * 214.98057 * 26 9 7 46 46 H 1.08997 * 117.50510 * 359.97223 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3908 2.1075 -1.3948 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4119 0.5915 7 6 2.0045 -1.1940 -0.0005 8 1 1.4672 -2.1278 0.0756 9 6 3.5082 -1.1959 -0.1010 10 6 4.2584 -1.2703 1.2304 11 7 3.8022 -0.1864 2.1107 12 6 4.5904 -0.1475 3.3497 13 6 4.0594 -1.2004 4.3251 14 6 4.9057 -1.1807 5.6019 15 7 4.9190 0.1867 6.1391 16 6 4.5646 0.4259 7.4172 17 8 4.5450 1.5662 7.8396 18 6 4.2009 -0.6944 8.3031 19 6 3.3160 -0.6486 9.4762 20 6 3.2832 -1.8988 9.9624 21 8 4.0579 -2.6872 9.2011 22 6 4.6106 -1.9917 8.2025 23 6 5.3266 1.2884 5.2565 24 6 4.4758 1.2409 3.9835 25 6 4.1421 -0.3729 -1.2242 26 6 4.1347 -1.9014 -1.3054 27 1 -0.4851 0.8401 0.0004 28 1 4.0613 -2.2314 1.7053 29 1 5.3284 -1.1664 1.0507 30 1 2.8172 -0.2738 2.3113 31 1 5.6354 -0.3575 3.1220 32 1 3.0218 -0.9766 4.5726 33 1 4.1195 -2.1863 3.8642 34 1 5.9242 -1.4923 5.3703 35 1 4.4725 -1.8582 6.3378 36 1 2.7975 0.2147 9.8663 37 1 2.7235 -2.2192 10.8287 38 1 5.2712 -2.3888 7.4460 39 1 6.3794 1.1782 4.9968 40 1 5.1730 2.2412 5.7632 41 1 4.8323 1.9927 3.2793 42 1 3.4341 1.4414 4.2343 43 1 3.4717 0.1703 -1.8902 44 1 5.0939 0.1154 -1.0148 45 1 5.0817 -2.4182 -1.1493 46 1 3.4595 -2.3646 -2.0248 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366654758.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:12 Heat of formation + Delta-G solvation = 9.722613 kcal Electronic energy + Delta-G solvation = -27205.131549 eV Core-core repulsion = 23483.207522 eV Total energy + Delta-G solvation = -3721.924027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.56329 -41.12109 -39.36715 -38.30920 -35.81528 -34.16388 -34.08217 -32.51542 -31.69873 -30.52694 -27.95162 -26.92612 -25.21027 -24.47647 -23.38446 -23.03994 -22.38801 -21.67656 -20.83363 -20.38645 -18.63248 -18.23054 -17.78622 -17.11095 -16.94779 -16.68757 -16.33971 -15.98029 -15.77960 -15.58892 -15.49062 -14.84407 -14.75755 -14.59508 -14.42900 -13.98338 -13.92420 -13.78310 -13.40236 -13.31405 -13.08328 -12.89651 -12.75802 -12.29354 -12.22331 -12.01647 -11.82445 -11.69866 -11.46750 -11.31595 -11.18088 -10.82895 -10.82436 -10.58807 -10.19553 -9.80657 -9.68216 -8.80773 -8.22936 -6.31306 0.34973 1.10899 1.46047 1.55919 1.76187 1.89819 2.07802 2.21973 2.55511 3.12239 3.19407 3.43212 3.59726 3.72205 3.74925 3.88940 4.03366 4.04966 4.20800 4.25787 4.32981 4.45532 4.48532 4.50537 4.58151 4.63559 4.69939 4.73927 4.76681 4.86537 4.90943 4.93274 4.96340 4.98161 5.05881 5.17347 5.22889 5.29625 5.32440 5.45712 5.51795 5.56574 5.82336 5.97420 6.29228 6.33715 6.48772 6.59844 6.81266 7.04431 7.42716 8.90105 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.003295 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.649257 B = 8496.620665 C = 8649.530480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.031 3.969 3 Si 0.919 3.081 4 H -0.310 1.310 5 H -0.325 1.325 6 H -0.154 1.154 7 C -0.486 4.486 8 H 0.025 0.975 9 C -0.015 4.015 10 C 0.113 3.887 11 N -0.687 5.687 12 C 0.089 3.911 13 C -0.161 4.161 14 C 0.090 3.910 15 N -0.601 5.601 16 C 0.580 3.420 17 O -0.589 6.589 18 C -0.265 4.265 19 C -0.204 4.204 20 C -0.018 4.018 21 O -0.176 6.176 22 C 0.028 3.972 23 C 0.120 3.880 24 C -0.120 4.120 25 C -0.194 4.194 26 C -0.170 4.170 27 H 0.259 0.741 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.336 0.664 31 H 0.100 0.900 32 H 0.042 0.958 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.151 0.849 37 H 0.248 0.752 38 H 0.255 0.745 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.036 0.964 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.110 0.890 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.819 -6.210 17.510 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.166 4.166 3 Si 0.747 3.253 4 H -0.238 1.238 5 H -0.255 1.255 6 H -0.075 1.075 7 C -0.523 4.523 8 H 0.044 0.956 9 C -0.017 4.017 10 C -0.016 4.016 11 N -0.317 5.317 12 C -0.021 4.021 13 C -0.201 4.201 14 C -0.032 4.032 15 N -0.333 5.333 16 C 0.371 3.629 17 O -0.471 6.471 18 C -0.270 4.270 19 C -0.224 4.224 20 C -0.084 4.084 21 O -0.070 6.070 22 C -0.042 4.042 23 C -0.003 4.003 24 C -0.159 4.159 25 C -0.231 4.231 26 C -0.208 4.208 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.155 0.845 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.169 0.831 37 H 0.264 0.736 38 H 0.271 0.729 39 H 0.117 0.883 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.074 0.926 44 H 0.122 0.878 45 H 0.128 0.872 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.107 -5.355 17.450 24.344 hybrid contribution -1.627 0.733 -0.132 1.790 sum 14.480 -4.623 17.318 23.042 Atomic orbital electron populations 1.70086 1.08819 1.27659 1.53019 1.25749 0.94799 1.02808 0.93240 0.86396 0.85375 0.77451 0.76071 1.23830 1.25451 1.07452 1.20443 0.89950 0.92091 1.49861 0.95634 1.19398 0.92353 1.01353 0.88553 1.21368 0.97303 0.91418 0.91496 1.60748 1.08265 1.47719 1.14942 1.21652 0.98868 0.93523 0.88065 1.22632 0.99377 1.01364 0.96748 1.22578 1.02533 0.82119 0.95952 1.48073 1.65573 1.09826 1.09805 1.17750 0.75788 0.87593 0.81778 1.90739 1.55893 1.24514 1.75994 1.21530 1.08860 0.94765 1.01819 1.22949 1.02993 0.99630 0.96786 1.24611 0.97123 0.88266 0.98380 1.83870 1.49643 1.39806 1.33684 1.25506 0.98474 0.88915 0.91267 1.21629 0.99317 0.90141 0.89202 1.21869 0.99375 0.98426 0.96210 1.22873 1.01765 0.94062 1.04369 1.22919 1.01922 0.93776 1.02197 0.93250 0.95459 0.90290 0.84473 0.88158 0.93909 0.89306 0.87047 0.87223 0.83094 0.73642 0.72948 0.88342 0.90741 0.89810 0.94481 0.92600 0.87843 0.87194 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.34 13.96 21.45 0.30 -60.04 16 2 C 0.03 1.79 5.20 84.65 0.44 2.23 16 3 Si 0.92 44.73 23.16 68.60 1.59 46.32 16 4 H -0.31 -15.52 7.07 99.48 0.70 -14.82 16 5 H -0.32 -16.76 7.11 99.48 0.71 -16.06 16 6 H -0.15 -6.46 5.04 99.48 0.50 -5.96 16 7 C -0.49 -26.44 8.69 25.60 0.22 -26.22 16 8 H 0.03 1.58 8.06 -2.91 -0.02 1.56 16 9 C -0.02 -0.64 1.37 -52.93 -0.07 -0.72 16 10 C 0.11 3.73 5.42 86.30 0.47 4.19 16 11 N -0.69 -23.06 3.24 -491.44 -1.59 -24.65 16 12 C 0.09 2.17 2.42 44.94 0.11 2.28 16 13 C -0.16 -3.47 5.34 30.67 0.16 -3.31 16 14 C 0.09 1.37 5.38 86.36 0.46 1.83 16 15 N -0.60 -13.30 2.97 -822.83 -2.45 -15.74 16 16 C 0.58 16.00 7.68 86.65 0.67 16.67 16 17 O -0.59 -21.28 16.48 -4.09 -0.07 -21.34 16 18 C -0.27 -5.84 5.90 -18.99 -0.11 -5.96 16 19 C -0.20 -4.12 11.10 23.65 0.26 -3.86 16 20 C -0.02 -0.24 12.03 66.89 0.80 0.56 16 21 O -0.18 -2.54 10.52 4.46 0.05 -2.49 16 22 C 0.03 0.40 9.83 67.39 0.66 1.06 16 23 C 0.12 2.67 6.43 86.36 0.56 3.23 16 24 C -0.12 -3.10 5.69 30.67 0.17 -2.92 16 25 C -0.19 -7.54 7.24 30.62 0.22 -7.32 16 26 C -0.17 -6.21 9.96 30.62 0.30 -5.91 16 27 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 28 H 0.03 0.87 7.32 -2.39 -0.02 0.86 16 29 H 0.08 2.15 7.88 -2.39 -0.02 2.13 16 30 H 0.34 13.62 7.00 -89.69 -0.63 12.99 16 31 H 0.10 1.99 7.78 -2.39 -0.02 1.97 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.77 7.28 -2.39 -0.02 1.75 16 34 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.11 1.35 3.56 -2.38 -0.01 1.34 16 36 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 37 H 0.25 1.05 8.06 -2.91 -0.02 1.03 16 38 H 0.26 1.57 5.87 -2.91 -0.02 1.56 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.98 7.01 -2.39 -0.02 1.96 16 41 H 0.08 2.15 8.14 -2.38 -0.02 2.14 16 42 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 2.48 6.54 -2.39 -0.02 2.46 16 44 H 0.10 3.42 8.14 -2.39 -0.02 3.40 16 45 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 46 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 Total: -1.00 -78.43 357.06 3.32 -75.11 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: 0.16 Total: 26.99 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 5.33 Total: -24.15 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -3.74 Total: -100.43 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.02 Total: -23.83 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.59 Total: 46.32 kcal Total: -78.43 3.32 -75.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366654758.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.828 kcal (2) G-P(sol) polarization free energy of solvation -78.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds