Wall clock time and date at job start Tue Mar 31 2020 12:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46938 * 2 1 4 4 C 1.53001 * 109.47279 * 240.00324 * 2 1 3 5 5 C 1.50707 * 109.47136 * 59.99305 * 4 2 1 6 6 H 1.08001 * 119.99569 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00204 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00136 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47160 * 90.00077 * 9 7 5 11 11 H 1.48498 * 109.47332 * 210.00037 * 9 7 5 12 12 H 1.48501 * 109.47103 * 330.00367 * 9 7 5 13 13 C 1.53001 * 109.47512 * 120.00259 * 2 1 3 14 14 N 1.46503 * 109.46955 * 299.99962 * 13 2 1 15 15 C 1.38220 * 119.99880 * 180.02562 * 14 13 2 16 16 N 1.32554 * 119.96475 * 0.02562 * 15 14 13 17 17 C 1.31848 * 122.07264 * 179.72197 * 16 15 14 18 18 C 1.38668 * 121.14722 * 0.02672 * 17 16 15 19 19 C 1.37601 * 119.08666 * 359.97135 * 18 17 16 20 20 C 1.40050 * 119.08870 * 0.02562 * 19 18 17 21 21 C 1.46771 * 108.04332 * 180.02562 * 20 19 18 22 22 O 1.21526 * 124.85449 * 180.02562 * 21 20 19 23 23 O 1.34474 * 110.29356 * 359.97438 * 21 20 19 24 24 C 1.45489 * 108.98096 * 0.02562 * 23 21 20 25 25 C 1.53002 * 110.09431 * 240.78680 * 24 23 21 26 26 C 1.53006 * 110.08580 * 119.21380 * 24 23 21 27 27 H 1.09000 * 109.47105 * 299.99875 * 1 2 3 28 28 H 1.08993 * 109.47626 * 59.99923 * 1 2 3 29 29 H 1.09005 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46869 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46859 * 300.00135 * 3 2 1 32 32 H 1.08995 * 109.46892 * 60.00547 * 3 2 1 33 33 H 1.08993 * 109.47564 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47255 * 300.00212 * 4 2 1 35 35 H 0.97006 * 119.99685 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46719 * 180.02562 * 13 2 1 37 37 H 1.08999 * 109.47070 * 59.99716 * 13 2 1 38 38 H 0.97001 * 119.99937 * 359.97438 * 14 13 2 39 39 H 1.07999 * 119.42665 * 179.97438 * 17 16 15 40 40 H 1.07999 * 120.45756 * 180.02562 * 18 17 16 41 41 H 1.09000 * 109.47280 * 176.88003 * 25 24 23 42 42 H 1.08999 * 109.47014 * 296.88860 * 25 24 23 43 43 H 1.09002 * 109.46516 * 56.87770 * 25 24 23 44 44 H 1.08999 * 109.46836 * 303.12003 * 26 24 23 45 45 H 1.08994 * 109.47339 * 63.11925 * 26 24 23 46 46 H 1.09000 * 109.47548 * 183.12501 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4798 6 1 0.9169 0.8675 -2.3806 7 6 1.8701 -0.4820 -3.7320 8 7 2.6255 -1.5518 -3.8527 9 14 1.2479 0.3989 -5.2572 10 1 2.2267 1.4399 -5.6615 11 1 1.0821 -0.5801 -6.3614 12 1 -0.0598 1.0374 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8862 -0.5027 3.7008 16 7 2.6492 -1.5798 3.8215 17 6 2.9979 -2.0625 4.9978 18 6 2.5776 -1.4596 6.1737 19 6 1.7835 -0.3380 6.1037 20 6 1.4217 0.1626 4.8467 21 6 0.5838 1.3497 5.0542 22 8 0.1015 2.0233 4.1651 23 8 0.4252 1.5846 6.3687 24 6 1.1473 0.5703 7.1213 25 6 0.1773 -0.2228 7.9993 26 6 2.2247 1.2261 7.9873 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7208 -1.2496 34 1 1.6767 -1.7488 -1.2494 35 1 2.8593 -1.8836 -4.7338 36 1 3.1301 -0.7208 1.2493 37 1 1.6767 -1.7489 1.2492 38 1 0.9943 0.7582 2.3564 39 1 3.6209 -2.9433 5.0464 40 1 2.8702 -1.8642 7.1314 41 1 0.7193 -1.0149 8.5159 42 1 -0.2777 0.4438 8.7319 43 1 -0.6010 -0.6623 7.3754 44 1 2.8933 1.8104 7.3550 45 1 1.7532 1.8809 8.7201 46 1 2.7955 0.4543 8.5038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367935261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:45 Heat of formation + Delta-G solvation = -53.039574 kcal Electronic energy + Delta-G solvation = -27052.107839 eV Core-core repulsion = 23327.462239 eV Total energy + Delta-G solvation = -3724.645600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.09481 -39.50554 -38.11166 -37.43341 -34.69935 -33.95626 -32.31634 -31.91015 -29.91367 -27.93974 -27.05882 -26.47234 -26.19744 -24.81562 -23.83351 -22.80622 -22.14167 -20.26326 -18.35312 -18.06752 -17.19873 -16.64524 -16.55708 -16.34883 -15.93390 -15.20166 -14.79616 -14.79195 -14.51683 -14.15359 -14.00247 -13.84742 -13.69575 -13.18279 -12.83870 -12.81586 -12.70513 -12.65478 -12.36203 -12.19212 -12.05329 -11.92243 -11.29544 -11.13758 -10.99746 -10.83298 -10.63389 -10.49090 -10.39082 -10.29476 -10.23100 -9.95471 -9.78168 -9.74014 -9.19053 -8.92450 -8.35195 -7.83701 -5.99633 -4.00400 0.39183 1.17559 2.41071 2.71781 3.24936 3.32227 3.39003 3.42040 3.47875 3.65438 3.76532 4.22587 4.39245 4.42318 4.48174 4.71290 4.91326 5.05314 5.14045 5.16776 5.19835 5.20463 5.36187 5.40428 5.50277 5.55066 5.61640 5.65698 5.78007 5.79965 6.10321 6.21628 6.26605 6.26931 6.41615 6.49008 6.67014 6.67065 7.03371 7.09008 7.09930 7.18977 7.28559 7.42287 7.63552 7.75822 7.99295 8.06300 8.41767 9.04143 9.62768 11.11876 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.002848 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.098780 B = 9829.127890 C =10507.622763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C -0.129 4.129 4 C 0.039 3.961 5 C -0.510 4.510 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.131 3.869 14 N -0.684 5.684 15 C 0.484 3.516 16 N -0.538 5.538 17 C 0.204 3.796 18 C -0.229 4.229 19 C 0.001 3.999 20 C -0.342 4.342 21 C 0.533 3.467 22 O -0.464 6.464 23 O -0.317 6.317 24 C 0.141 3.859 25 C -0.147 4.147 26 C -0.147 4.147 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.030 0.970 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.420 0.580 39 H 0.169 0.831 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 -0.083 26.752 26.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 C -0.187 4.187 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.008 3.992 14 N -0.311 5.311 15 C 0.243 3.757 16 N -0.256 5.256 17 C 0.040 3.960 18 C -0.253 4.253 19 C -0.007 4.007 20 C -0.352 4.352 21 C 0.376 3.624 22 O -0.350 6.350 23 O -0.233 6.233 24 C 0.103 3.897 25 C -0.204 4.204 26 C -0.204 4.204 27 H 0.049 0.951 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.260 0.740 39 H 0.186 0.814 40 H 0.158 0.842 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.140 -0.135 25.270 25.270 hybrid contribution -0.667 0.963 -0.291 1.207 sum -0.527 0.828 24.979 24.998 Atomic orbital electron populations 1.21777 0.95196 1.01132 1.00546 1.20947 0.95612 0.95955 0.94956 1.21779 1.00430 0.95902 1.00542 1.19074 0.96294 0.95163 0.89360 1.21196 1.31130 1.12042 0.90506 0.92234 1.25000 0.95324 0.95070 0.99066 1.69966 1.37113 1.23011 1.23413 0.86644 0.79253 0.79415 0.83001 1.20763 1.21330 1.19912 1.21787 0.99049 0.96013 0.82372 1.45324 1.52025 1.31300 1.02452 1.18007 0.86019 0.86821 0.84848 1.67484 1.17073 1.12806 1.28227 1.22884 0.91265 0.95828 0.86011 1.20877 1.05480 0.98363 1.00540 1.20710 0.92521 0.93657 0.93837 1.20805 1.14601 1.04861 0.94967 1.20072 0.77883 0.82740 0.81704 1.90883 1.49324 1.52740 1.42047 1.87308 1.67382 1.49849 1.18759 1.21371 0.92338 0.85670 0.90291 1.22012 0.98972 1.00016 0.99391 1.22011 0.97015 1.01849 0.99513 0.95105 0.91277 0.93364 0.93363 0.91284 0.95101 0.96318 0.96303 0.93068 0.91357 0.91349 0.73969 0.81386 0.84242 0.89672 0.90338 0.91240 0.91240 0.90336 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.05 37.16 0.30 -2.19 16 2 C -0.07 -1.48 0.54 -154.51 -0.08 -1.56 16 3 C -0.13 -2.48 8.05 37.16 0.30 -2.18 16 4 C 0.04 0.95 4.04 -27.88 -0.11 0.84 16 5 C -0.51 -13.80 7.65 -34.44 -0.26 -14.06 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.13 2.33 4.58 -4.04 -0.02 2.32 16 14 N -0.68 -11.31 5.08 -60.24 -0.31 -11.61 16 15 C 0.48 7.37 7.51 -155.16 -1.17 6.21 16 16 N -0.54 -7.52 9.54 -12.14 -0.12 -7.64 16 17 C 0.20 1.98 11.18 -17.39 -0.19 1.78 16 18 C -0.23 -1.87 10.09 -39.66 -0.40 -2.27 16 19 C 0.00 0.01 5.03 -104.27 -0.52 -0.52 16 20 C -0.34 -4.77 6.22 -104.95 -0.65 -5.42 16 21 C 0.53 8.12 8.54 34.18 0.29 8.41 16 22 O -0.46 -8.38 16.71 -18.96 -0.32 -8.70 16 23 O -0.32 -4.05 10.52 -39.53 -0.42 -4.46 16 24 C 0.14 1.24 1.39 -91.86 -0.13 1.12 16 25 C -0.15 -0.91 8.94 37.16 0.33 -0.58 16 26 C -0.15 -0.91 8.94 37.16 0.33 -0.58 16 27 H 0.03 0.53 6.86 -51.93 -0.36 0.18 16 28 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 1.41 6.62 -51.93 -0.34 1.06 16 32 H 0.03 0.53 6.86 -51.93 -0.36 0.18 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.42 7.15 4.78 -40.82 -0.20 6.96 16 39 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -32.20 371.76 -8.87 -41.07 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.95 Total: 2.21 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -2.09 Total: -7.20 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.31 Total: -45.02 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.73 Total: -13.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.20 -8.87 -41.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367935261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.973 kcal (2) G-P(sol) polarization free energy of solvation -32.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds