Wall clock time and date at job start Tue Mar 31 2020 12:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46938 * 2 1 4 4 C 1.53001 * 109.47279 * 240.00324 * 2 1 3 5 5 C 1.50707 * 109.47136 * 59.99305 * 4 2 1 6 6 H 1.08001 * 119.99569 * 0.02562 * 5 4 2 7 7 C 1.37872 * 120.00204 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99811 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00136 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47160 * 90.00077 * 9 7 5 11 11 H 1.48498 * 109.47332 * 210.00037 * 9 7 5 12 12 H 1.48501 * 109.47103 * 330.00367 * 9 7 5 13 13 C 1.53001 * 109.47512 * 120.00259 * 2 1 3 14 14 N 1.46503 * 109.46955 * 299.99962 * 13 2 1 15 15 C 1.38220 * 119.99880 * 180.02562 * 14 13 2 16 16 N 1.32554 * 119.96475 * 0.02562 * 15 14 13 17 17 C 1.31848 * 122.07264 * 179.72197 * 16 15 14 18 18 C 1.38668 * 121.14722 * 0.02672 * 17 16 15 19 19 C 1.37601 * 119.08666 * 359.97135 * 18 17 16 20 20 C 1.40050 * 119.08870 * 0.02562 * 19 18 17 21 21 C 1.46771 * 108.04332 * 180.02562 * 20 19 18 22 22 O 1.21526 * 124.85449 * 180.02562 * 21 20 19 23 23 O 1.34474 * 110.29356 * 359.97438 * 21 20 19 24 24 C 1.45489 * 108.98096 * 0.02562 * 23 21 20 25 25 C 1.53002 * 110.09431 * 240.78680 * 24 23 21 26 26 C 1.53006 * 110.08580 * 119.21380 * 24 23 21 27 27 H 1.09000 * 109.47105 * 299.99875 * 1 2 3 28 28 H 1.08993 * 109.47626 * 59.99923 * 1 2 3 29 29 H 1.09005 * 109.46758 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46869 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46859 * 300.00135 * 3 2 1 32 32 H 1.08995 * 109.46892 * 60.00547 * 3 2 1 33 33 H 1.08993 * 109.47564 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47255 * 300.00212 * 4 2 1 35 35 H 0.97006 * 119.99685 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.46719 * 180.02562 * 13 2 1 37 37 H 1.08999 * 109.47070 * 59.99716 * 13 2 1 38 38 H 0.97001 * 119.99937 * 359.97438 * 14 13 2 39 39 H 1.07999 * 119.42665 * 179.97438 * 17 16 15 40 40 H 1.07999 * 120.45756 * 180.02562 * 18 17 16 41 41 H 1.09000 * 109.47280 * 176.88003 * 25 24 23 42 42 H 1.08999 * 109.47014 * 296.88860 * 25 24 23 43 43 H 1.09002 * 109.46516 * 56.87770 * 25 24 23 44 44 H 1.08999 * 109.46836 * 303.12003 * 26 24 23 45 45 H 1.08994 * 109.47339 * 63.11925 * 26 24 23 46 46 H 1.09000 * 109.47548 * 183.12501 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5375 -0.0108 -2.4798 6 1 0.9169 0.8675 -2.3806 7 6 1.8701 -0.4820 -3.7320 8 7 2.6255 -1.5518 -3.8527 9 14 1.2479 0.3989 -5.2572 10 1 2.2267 1.4399 -5.6615 11 1 1.0821 -0.5801 -6.3614 12 1 -0.0598 1.0374 -4.9612 13 6 2.0401 -0.7213 1.2492 14 7 1.5517 -0.0307 2.4454 15 6 1.8862 -0.5027 3.7008 16 7 2.6492 -1.5798 3.8215 17 6 2.9979 -2.0625 4.9978 18 6 2.5776 -1.4596 6.1737 19 6 1.7835 -0.3380 6.1037 20 6 1.4217 0.1626 4.8467 21 6 0.5838 1.3497 5.0542 22 8 0.1015 2.0233 4.1651 23 8 0.4252 1.5846 6.3687 24 6 1.1473 0.5703 7.1213 25 6 0.1773 -0.2228 7.9993 26 6 2.2247 1.2261 7.9873 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1299 -0.7208 -1.2496 34 1 1.6767 -1.7488 -1.2494 35 1 2.8593 -1.8836 -4.7338 36 1 3.1301 -0.7208 1.2493 37 1 1.6767 -1.7489 1.2492 38 1 0.9943 0.7582 2.3564 39 1 3.6209 -2.9433 5.0464 40 1 2.8702 -1.8642 7.1314 41 1 0.7193 -1.0149 8.5159 42 1 -0.2777 0.4438 8.7319 43 1 -0.6010 -0.6623 7.3754 44 1 2.8933 1.8104 7.3550 45 1 1.7532 1.8809 8.7201 46 1 2.7955 0.4543 8.5038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367935261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:45 Heat of formation + Delta-G solvation = -71.336577 kcal Electronic energy + Delta-G solvation = -27052.901256 eV Core-core repulsion = 23327.462239 eV Total energy + Delta-G solvation = -3725.439017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.00562 -40.53328 -39.37218 -38.74716 -36.00399 -34.89432 -34.23809 -32.74630 -30.99149 -29.00718 -28.38846 -28.08695 -27.58911 -25.75797 -25.24389 -24.02139 -23.35285 -21.18475 -19.86686 -19.08293 -18.43143 -18.20020 -17.69552 -17.51972 -17.04117 -16.52551 -16.08419 -16.01658 -15.72442 -15.12916 -15.05348 -14.87627 -14.79491 -14.62106 -14.40851 -14.00021 -13.96348 -13.59695 -13.25219 -13.24962 -12.95259 -12.79515 -12.76718 -12.73257 -12.56404 -12.41565 -12.27835 -12.02722 -11.99223 -11.70046 -11.52627 -11.21832 -11.09943 -10.90240 -10.85962 -10.62578 -10.52596 -8.92334 -8.16076 -6.23153 -0.52453 0.30849 1.36496 1.40388 1.40552 1.51165 1.82950 2.13777 2.42931 2.67033 2.73810 2.88676 3.18151 3.50982 3.66920 3.83392 3.83884 3.94152 4.01703 4.06683 4.15789 4.43729 4.54642 4.63525 4.66211 4.68193 4.70427 4.72081 4.77235 4.77345 4.86069 4.99525 5.01780 5.03688 5.18282 5.22298 5.33006 5.40046 5.41161 5.44206 5.51874 5.58771 5.73811 5.86591 5.98478 6.13756 6.29842 6.32360 6.90258 7.04297 7.44024 8.96214 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026607 B = 0.002848 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.098780 B = 9829.127890 C =10507.622763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.068 4.068 3 C -0.121 4.121 4 C 0.047 3.953 5 C -0.518 4.518 6 H 0.065 0.935 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.955 3.045 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.152 3.848 14 N -0.697 5.697 15 C 0.464 3.536 16 N -0.569 5.569 17 C 0.200 3.800 18 C -0.200 4.200 19 C 0.005 3.995 20 C -0.367 4.367 21 C 0.528 3.472 22 O -0.509 6.509 23 O -0.328 6.328 24 C 0.132 3.868 25 C -0.144 4.144 26 C -0.144 4.144 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.048 0.952 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.261 0.739 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.415 0.585 39 H 0.208 0.792 40 H 0.193 0.807 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.501 -0.595 30.070 30.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.069 4.069 3 C -0.178 4.178 4 C 0.010 3.990 5 C -0.556 4.556 6 H 0.083 0.917 7 C -0.197 4.197 8 N -0.575 5.575 9 Si 0.781 3.219 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.189 1.189 13 C 0.029 3.971 14 N -0.326 5.326 15 C 0.226 3.774 16 N -0.288 5.288 17 C 0.039 3.961 18 C -0.222 4.222 19 C -0.003 4.003 20 C -0.377 4.377 21 C 0.374 3.626 22 O -0.399 6.399 23 O -0.244 6.244 24 C 0.096 3.904 25 C -0.201 4.201 26 C -0.201 4.201 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.254 0.746 39 H 0.225 0.775 40 H 0.210 0.790 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.108 0.892 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.539 -0.667 28.668 28.681 hybrid contribution -0.713 1.021 -1.088 1.654 sum -0.174 0.355 27.580 27.583 Atomic orbital electron populations 1.21668 0.94452 1.00966 1.00720 1.20761 0.96113 0.96083 0.93932 1.21672 1.00148 0.95261 1.00741 1.18899 0.94530 0.94204 0.91408 1.21565 1.30622 1.12048 0.91368 0.91682 1.25863 0.95624 0.95838 1.02400 1.70098 1.38603 1.24648 1.24146 0.85588 0.79018 0.78263 0.79043 1.20122 1.21093 1.18936 1.21303 0.98197 0.95246 0.82397 1.45070 1.53305 1.31590 1.02604 1.18171 0.87013 0.87757 0.84455 1.67505 1.17608 1.12805 1.30844 1.23704 0.90660 0.96495 0.85278 1.21425 1.02411 0.96228 1.02177 1.21104 0.92405 0.94239 0.92571 1.20817 1.15565 1.05061 0.96231 1.20376 0.77418 0.82707 0.82141 1.90832 1.51257 1.54259 1.43535 1.87284 1.67875 1.51429 1.17859 1.21914 0.93447 0.85149 0.89911 1.22102 0.98381 1.00724 0.98887 1.22100 0.96124 1.02845 0.99024 0.93284 0.92580 0.93703 0.93703 0.92537 0.93284 0.98874 0.98861 0.93030 0.92315 0.92313 0.74579 0.77506 0.79018 0.86213 0.89166 0.92852 0.92853 0.89163 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 8.05 71.98 0.58 -4.20 16 2 C -0.07 -2.84 0.54 -52.18 -0.03 -2.87 16 3 C -0.12 -4.78 8.05 71.98 0.58 -4.20 16 4 C 0.05 2.45 4.04 29.85 0.12 2.57 16 5 C -0.52 -28.75 7.65 25.60 0.20 -28.55 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.46 16 7 C 0.00 0.00 5.46 84.65 0.46 0.46 16 8 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 C 0.15 5.70 4.58 86.38 0.40 6.09 16 14 N -0.70 -23.87 5.08 -344.49 -1.75 -25.62 16 15 C 0.46 14.26 7.51 133.60 1.00 15.26 16 16 N -0.57 -15.38 9.54 -192.32 -1.84 -17.21 16 17 C 0.20 3.20 11.18 84.79 0.95 4.15 16 18 C -0.20 -2.30 10.09 22.22 0.22 -2.08 16 19 C 0.00 0.09 5.03 -19.64 -0.10 -0.01 16 20 C -0.37 -10.11 6.22 -20.08 -0.12 -10.23 16 21 C 0.53 16.50 8.54 70.05 0.60 17.10 16 22 O -0.51 -19.36 16.71 19.44 0.32 -19.03 16 23 O -0.33 -8.25 10.52 -54.17 -0.57 -8.82 16 24 C 0.13 1.97 1.39 -11.60 -0.02 1.95 16 25 C -0.14 -1.25 8.94 71.98 0.64 -0.61 16 26 C -0.14 -1.25 8.94 71.98 0.64 -0.61 16 27 H 0.05 1.75 6.86 -2.39 -0.02 1.73 16 28 H 0.06 2.34 6.62 -2.39 -0.02 2.32 16 29 H 0.04 1.76 8.14 -2.38 -0.02 1.75 16 30 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 2.35 6.62 -2.39 -0.02 2.33 16 32 H 0.05 1.75 6.86 -2.39 -0.02 1.73 16 33 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 35 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.41 14.75 4.78 -92.71 -0.44 14.31 16 39 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 40 H 0.19 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.12 0.22 8.14 -2.39 -0.02 0.21 16 42 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 43 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 46 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -75.08 371.76 5.15 -69.92 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.55 Total: 16.33 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 6.13 Total: -5.79 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -3.30 Total: -99.39 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.24 Total: -27.86 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.08 5.15 -69.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367935261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.414 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds