Wall clock time and date at job start Tue Mar 31 2020 13:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38310 * 119.92092 * 2 1 4 4 C 1.38081 * 120.07240 * 180.27834 * 3 2 1 5 5 C 1.38944 * 119.92248 * 359.44735 * 4 3 2 6 6 N 1.39725 * 120.07459 * 180.25303 * 5 4 3 7 7 C 1.34775 * 120.00179 * 324.90368 * 6 5 4 8 8 O 1.21377 * 119.99725 * 4.62292 * 7 6 5 9 9 C 1.49355 * 119.99877 * 184.61877 * 7 6 5 10 10 O 1.21355 * 120.00315 * 0.02562 * 9 7 6 11 11 N 1.34784 * 119.99443 * 180.02562 * 9 7 6 12 12 C 1.46498 * 119.99643 * 180.02562 * 11 9 7 13 13 C 1.52993 * 109.47362 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.46871 * 299.99976 * 13 12 11 15 15 C 1.53000 * 109.47267 * 59.99485 * 13 12 11 16 16 C 1.50701 * 109.47707 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99476 * 359.97438 * 16 13 12 18 18 C 1.37873 * 120.00201 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00249 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99807 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.46956 * 90.00255 * 20 18 16 22 22 H 1.48504 * 109.47051 * 210.00083 * 20 18 16 23 23 H 1.48500 * 109.47131 * 329.99767 * 20 18 16 24 24 C 1.38907 * 119.85053 * 0.27428 * 5 4 3 25 25 C 1.38116 * 119.92294 * 0.02562 * 24 5 4 26 26 C 1.50704 * 119.96294 * 180.02562 * 25 24 5 27 27 H 1.09003 * 109.47032 * 270.27799 * 1 2 3 28 28 H 1.08997 * 109.47460 * 30.27527 * 1 2 3 29 29 H 1.08999 * 109.47273 * 150.28112 * 1 2 3 30 30 H 1.08003 * 119.96825 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.03656 * 179.72185 * 4 3 2 32 32 H 0.97000 * 120.00030 * 144.90700 * 6 5 4 33 33 H 0.96994 * 119.99991 * 0.02562 * 11 9 7 34 34 H 1.08997 * 109.47185 * 300.00106 * 12 11 9 35 35 H 1.09006 * 109.47317 * 59.99789 * 12 11 9 36 36 H 1.09003 * 109.47318 * 59.99851 * 14 13 12 37 37 H 1.09003 * 109.47216 * 179.97438 * 14 13 12 38 38 H 1.08998 * 109.47428 * 299.99537 * 14 13 12 39 39 H 1.09005 * 109.46947 * 60.00403 * 15 13 12 40 40 H 1.09002 * 109.47054 * 179.97438 * 15 13 12 41 41 H 1.08995 * 109.47562 * 300.00881 * 15 13 12 42 42 H 0.96995 * 120.00301 * 179.97438 * 19 18 16 43 43 H 1.07999 * 120.04177 * 180.02562 * 24 5 4 44 44 H 1.09000 * 109.47168 * 89.99869 * 26 25 24 45 45 H 1.08999 * 109.46709 * 210.00004 * 26 25 24 46 46 H 1.08998 * 109.47248 * 329.99585 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1988 0.0000 4 6 3.5777 1.2024 -0.0058 5 6 4.2740 0.0000 0.0000 6 7 5.6713 0.0001 -0.0005 7 6 6.3449 0.9517 -0.6766 8 8 5.7408 1.8563 -1.2150 9 6 7.8348 0.8930 -0.7633 10 8 8.4388 -0.0117 -0.2253 11 7 8.5085 1.8450 -1.4390 12 6 9.9698 1.7872 -1.5245 13 6 10.4804 2.9767 -2.3401 14 6 9.8847 2.9227 -3.7483 15 6 10.0605 4.2804 -1.6583 16 6 11.9838 2.9177 -2.4275 17 1 12.5212 2.1125 -1.9488 18 6 12.6729 3.8915 -3.1186 19 7 12.0184 4.8723 -3.7011 20 14 14.5363 3.8178 -3.2275 21 1 14.9315 3.0372 -4.4273 22 1 15.0809 5.1955 -3.3319 23 1 15.0778 3.1625 -2.0099 24 6 3.5780 -1.2020 0.0058 25 6 2.1968 -1.1984 0.0053 26 6 1.4407 -2.5020 0.0122 27 1 -0.3633 0.0050 1.0277 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3634 -0.8925 -0.5095 30 1 1.6551 2.1330 0.0004 31 1 4.1159 2.1388 -0.0103 32 1 6.1565 -0.6848 0.4857 33 1 8.0257 2.5683 -1.8686 34 1 10.3943 1.8261 -0.5213 35 1 10.2690 0.8582 -2.0098 36 1 8.7973 2.9657 -3.6847 37 1 10.2481 3.7704 -4.3293 38 1 10.1838 1.9940 -4.2341 39 1 10.4850 4.3189 -0.6550 40 1 10.4248 5.1278 -2.2392 41 1 8.9733 4.3234 -1.5947 42 1 12.5032 5.5576 -4.1870 43 1 4.1161 -2.1384 0.0107 44 1 1.2581 -2.8107 1.0415 45 1 0.4887 -2.3725 -0.5027 46 1 2.0284 -3.2656 -0.4973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411636255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:55 Heat of formation + Delta-G solvation = -54.798742 kcal Electronic energy + Delta-G solvation = -26028.015940 eV Core-core repulsion = 22303.294057 eV Total energy + Delta-G solvation = -3724.721883 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03354 -39.62628 -38.35191 -36.55818 -35.54447 -33.39285 -32.73497 -31.78503 -30.93388 -27.86148 -26.97334 -25.87962 -25.75236 -25.23505 -23.57224 -22.52381 -21.09759 -19.94737 -19.10487 -18.52522 -17.10787 -16.53967 -16.09285 -15.79124 -15.68811 -15.33812 -14.92491 -14.69275 -14.47811 -14.13858 -14.01897 -13.59590 -13.29324 -13.09037 -12.98990 -12.96610 -12.72135 -12.31776 -12.25823 -12.14983 -11.75810 -11.43445 -11.40792 -11.24787 -11.13391 -10.90555 -10.72542 -10.43031 -10.33663 -10.21889 -9.68572 -9.60481 -9.30296 -8.93048 -8.83322 -8.67769 -8.39945 -8.20225 -6.04868 -4.15797 0.92357 1.19406 1.64333 2.42758 3.26662 3.28992 3.33934 3.37164 3.58221 3.79111 4.36808 4.53291 4.60594 4.68470 4.80508 4.86647 5.05350 5.20790 5.21807 5.22874 5.37236 5.46547 5.53756 5.57273 5.68233 5.84355 6.05766 6.10504 6.16184 6.19053 6.29525 6.42956 6.44976 6.55849 6.76524 6.81742 6.83576 6.89600 6.97092 6.99861 7.29931 7.52072 7.57112 7.66744 7.84856 7.97275 8.08483 8.24308 8.36155 8.84343 9.50231 10.96552 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.035813 B = 0.002238 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.662040 B =12510.268597 C =12948.805734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.103 4.103 3 C -0.098 4.098 4 C -0.121 4.121 5 C 0.142 3.858 6 N -0.649 5.649 7 C 0.508 3.492 8 O -0.500 6.500 9 C 0.498 3.502 10 O -0.532 6.532 11 N -0.677 5.677 12 C 0.127 3.873 13 C 0.056 3.944 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.895 3.105 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.138 4.138 25 C -0.071 4.071 26 C -0.116 4.116 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.126 0.874 31 H 0.141 0.859 32 H 0.422 0.578 33 H 0.411 0.589 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.008 0.992 37 H 0.087 0.913 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.087 0.913 41 H 0.008 0.992 42 H 0.261 0.739 43 H 0.127 0.873 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.101 -10.034 7.438 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.117 4.117 4 C -0.141 4.141 5 C 0.048 3.952 6 N -0.296 5.296 7 C 0.291 3.709 8 O -0.373 6.373 9 C 0.277 3.723 10 O -0.410 6.410 11 N -0.328 5.328 12 C 0.006 3.994 13 C 0.055 3.945 14 C -0.192 4.192 15 C -0.191 4.191 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.158 4.158 25 C -0.072 4.072 26 C -0.172 4.172 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.144 0.856 31 H 0.158 0.842 32 H 0.260 0.740 33 H 0.249 0.751 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.027 0.973 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.145 0.855 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.952 -9.822 7.277 24.258 hybrid contribution 1.156 0.020 -0.080 1.159 sum -19.797 -9.803 7.197 23.233 Atomic orbital electron populations 1.20829 0.91267 1.02799 1.02201 1.19769 0.96058 0.92583 1.01974 1.20929 0.93506 0.97600 0.99656 1.21313 0.94244 0.97865 1.00637 1.17728 0.81908 0.94282 1.01259 1.43158 1.04788 1.31280 1.50386 1.20679 0.89446 0.82157 0.78646 1.90757 1.69713 1.32848 1.44000 1.19732 0.87015 0.84020 0.81510 1.90742 1.69373 1.34538 1.46372 1.46228 1.09974 1.26199 1.50447 1.21985 0.74869 1.01431 1.01140 1.18391 0.95577 0.89295 0.91254 1.21864 0.95308 1.02268 0.99732 1.21860 0.95570 1.02164 0.99555 1.20933 0.89964 1.10096 1.33581 0.92329 1.24889 0.98395 0.95170 0.95081 1.69803 1.35034 1.12895 1.34500 0.86548 0.85461 0.77227 0.78486 1.20697 1.21253 1.19899 1.20776 0.93812 0.96505 1.04751 1.19496 0.92728 0.95071 0.99894 1.20850 1.00105 0.93877 1.02399 0.91294 0.91642 0.91258 0.85621 0.84176 0.73980 0.75098 0.91843 0.91862 0.97288 0.89393 0.95313 0.95308 0.89395 0.97288 0.92911 0.85503 0.91068 0.91024 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 9.60 36.01 0.35 -0.39 16 2 C -0.10 -0.96 5.88 -104.58 -0.62 -1.58 16 3 C -0.10 -1.03 9.69 -39.61 -0.38 -1.41 16 4 C -0.12 -1.51 8.69 -39.38 -0.34 -1.85 16 5 C 0.14 1.73 6.30 -83.75 -0.53 1.20 16 6 N -0.65 -8.17 5.32 -10.30 -0.05 -8.23 16 7 C 0.51 7.77 7.73 -11.63 -0.09 7.68 16 8 O -0.50 -8.42 13.91 5.47 0.08 -8.34 16 9 C 0.50 8.55 7.89 -11.63 -0.09 8.46 16 10 O -0.53 -9.94 16.48 5.49 0.09 -9.85 16 11 N -0.68 -12.31 4.95 -60.76 -0.30 -12.61 16 12 C 0.13 2.62 4.50 -4.05 -0.02 2.60 16 13 C 0.06 1.27 0.50 -155.66 -0.08 1.20 16 14 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 15 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 16 C -0.51 -13.03 8.01 -34.44 -0.28 -13.30 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 19 N -0.88 -23.43 9.35 55.43 0.52 -22.91 16 20 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C -0.14 -1.41 9.62 -39.38 -0.38 -1.79 16 25 C -0.07 -0.66 5.88 -104.65 -0.62 -1.27 16 26 C -0.12 -0.74 9.60 36.01 0.35 -0.39 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.39 8.09 -51.93 -0.42 -0.03 16 29 H 0.07 0.38 5.94 -51.93 -0.31 0.07 16 30 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 31 H 0.14 1.92 6.23 -52.48 -0.33 1.59 16 32 H 0.42 4.57 8.30 -40.82 -0.34 4.23 16 33 H 0.41 7.34 5.63 -40.82 -0.23 7.11 16 34 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 37 H 0.09 2.20 6.07 -51.93 -0.32 1.89 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 41 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 42 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 43 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.07 0.38 5.94 -51.93 -0.31 0.08 16 46 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -28.37 371.15 -7.93 -36.30 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.62 Total: 9.24 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -2.22 Total: -4.66 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.16 Total: -43.75 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.37 -7.93 -36.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411636255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.496 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds