Wall clock time and date at job start Tue Mar 31 2020 13:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 N 1.46499 * 109.47329 * 89.99403 * 6 5 4 8 8 C 1.34779 * 120.00064 * 180.02562 * 7 6 5 9 9 O 1.21342 * 120.00352 * 359.97438 * 8 7 6 10 10 C 1.49454 * 119.99764 * 180.02562 * 8 7 6 11 11 O 1.21350 * 120.00191 * 359.97438 * 10 8 7 12 12 N 1.34779 * 119.99764 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99747 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46896 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47305 * 300.00424 * 14 13 12 16 16 C 1.53006 * 109.46735 * 60.00667 * 14 13 12 17 17 C 1.50706 * 109.47019 * 180.02562 * 14 13 12 18 18 H 1.07999 * 119.99785 * 0.02562 * 17 14 13 19 19 C 1.37873 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31517 * 119.99914 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00074 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.46992 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47022 * 119.99899 * 21 19 17 24 24 H 1.48497 * 109.47189 * 239.99898 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 0.97003 * 120.00275 * 0.02562 * 7 6 5 35 35 H 0.96996 * 120.00045 * 0.02562 * 12 10 8 36 36 H 1.09004 * 109.47753 * 300.00194 * 13 12 10 37 37 H 1.08998 * 109.47358 * 60.00246 * 13 12 10 38 38 H 1.09000 * 109.47052 * 59.99777 * 15 14 13 39 39 H 1.09003 * 109.47076 * 179.97438 * 15 14 13 40 40 H 1.08998 * 109.46902 * 299.99560 * 15 14 13 41 41 H 1.08994 * 109.47218 * 59.99489 * 16 14 13 42 42 H 1.08998 * 109.46702 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.46970 * 299.99823 * 16 14 13 44 44 H 0.97001 * 119.99867 * 179.97438 * 20 19 17 45 45 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 7 6.2723 -0.0026 1.3692 8 6 7.5983 -0.0026 1.6104 9 8 8.3834 -0.0009 0.6852 10 6 8.1018 -0.0058 3.0176 11 8 7.3167 -0.0080 3.9430 12 7 9.4278 -0.0063 3.2588 13 6 9.9213 -0.0089 4.6382 14 6 11.4514 -0.0095 4.6323 15 6 11.9581 -1.2577 3.9070 16 6 11.9591 1.2409 3.9114 17 6 11.9591 -0.0128 6.0513 18 1 11.2604 -0.0147 6.8748 19 6 13.3156 -0.0134 6.2981 20 7 14.1664 -0.0106 5.2952 21 14 13.9449 -0.0182 8.0568 22 1 12.7935 -0.0215 8.9945 23 1 14.7709 -1.2313 8.2837 24 1 14.7708 1.1936 8.2903 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.6448 -0.0044 2.1089 35 1 10.0553 -0.0042 2.5192 36 1 9.5600 0.8802 5.1551 37 1 9.5600 -0.8998 5.1517 38 1 11.5909 -1.2557 2.8807 39 1 13.0481 -1.2579 3.9024 40 1 11.5964 -2.1484 4.4206 41 1 11.5981 2.1300 4.4281 42 1 13.0491 1.2402 3.9069 43 1 11.5919 1.2429 2.8851 44 1 15.1207 -0.0107 5.4688 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420679827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:03 Heat of formation + Delta-G solvation = -60.832119 kcal Electronic energy + Delta-G solvation = -25603.181544 eV Core-core repulsion = 21878.198034 eV Total energy + Delta-G solvation = -3724.983510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.50075 -39.72543 -38.30259 -36.47931 -35.51586 -33.42679 -32.78415 -31.29665 -30.88467 -28.93535 -26.43003 -25.71851 -25.40366 -24.83933 -23.09210 -22.81993 -21.15394 -20.19477 -19.02236 -18.35751 -16.68099 -16.43507 -16.16144 -15.85508 -15.49757 -15.46890 -15.14769 -14.82038 -14.42317 -14.22157 -14.11084 -13.77976 -13.47564 -13.11424 -13.02594 -12.92580 -12.67477 -12.36643 -12.34530 -12.21755 -11.48235 -11.43843 -11.39914 -11.33191 -11.18479 -10.89277 -10.67223 -10.39918 -10.20060 -9.65062 -9.57575 -9.35661 -9.29387 -9.26704 -8.91608 -8.78545 -8.59567 -8.37257 -6.02586 -4.13228 0.83345 1.05115 1.66468 2.62907 3.27003 3.35654 3.38890 3.41233 3.48404 4.03660 4.28084 4.39529 4.42847 4.55182 4.66091 4.81160 4.82908 5.09085 5.17887 5.18398 5.24096 5.32973 5.38411 5.44587 5.71491 5.72228 6.01310 6.11082 6.11957 6.22356 6.22860 6.24038 6.47469 6.62271 6.63858 6.83135 6.85598 6.94537 7.00758 7.11580 7.33750 7.55487 7.67352 7.72090 7.97555 8.00365 8.13128 8.32986 8.41898 8.87230 9.52659 10.98843 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.002043 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.572596 B =13700.274544 C =14034.841230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.079 4.079 3 C -0.123 4.123 4 C -0.094 4.094 5 C -0.115 4.115 6 C 0.160 3.840 7 N -0.702 5.702 8 C 0.507 3.493 9 O -0.521 6.521 10 C 0.496 3.504 11 O -0.535 6.535 12 N -0.680 5.680 13 C 0.128 3.872 14 C 0.055 3.945 15 C -0.133 4.133 16 C -0.133 4.133 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.094 4.094 26 C -0.123 4.123 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.414 0.586 35 H 0.411 0.589 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.008 0.992 39 H 0.087 0.913 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.008 0.992 44 H 0.260 0.740 45 H 0.126 0.874 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.888 0.030 -12.859 26.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.112 4.112 5 C -0.116 4.116 6 C 0.038 3.962 7 N -0.357 5.357 8 C 0.289 3.711 9 O -0.396 6.396 10 C 0.275 3.725 11 O -0.413 6.413 12 N -0.332 5.332 13 C 0.006 3.994 14 C 0.054 3.946 15 C -0.191 4.191 16 C -0.191 4.191 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.136 4.136 20 N -0.522 5.522 21 Si 0.722 3.278 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.112 4.112 26 C -0.141 4.141 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.250 0.750 35 H 0.248 0.752 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.027 0.973 39 H 0.106 0.894 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.106 0.894 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.144 0.856 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.632 0.028 -12.889 26.044 hybrid contribution 0.375 -0.002 0.900 0.975 sum -22.257 0.027 -11.988 25.280 Atomic orbital electron populations 1.20825 0.91107 1.02986 1.02419 1.20018 0.96225 0.93259 0.98445 1.21052 0.94070 0.97696 1.01308 1.21121 0.94250 0.97648 0.98204 1.19832 0.94634 0.93735 1.03383 1.20266 0.89215 1.03614 0.83146 1.45837 1.06791 1.73867 1.09177 1.20511 0.82993 0.77343 0.90300 1.90755 1.55491 1.47722 1.45606 1.19951 0.84318 0.79593 0.88638 1.90728 1.55644 1.49862 1.45106 1.46220 1.05513 1.69455 1.11987 1.21945 0.97723 1.01068 0.78657 1.18401 0.86682 0.93122 0.96399 1.21852 1.04678 0.97422 0.95139 1.21852 1.04691 0.97412 0.95143 1.20985 0.91728 1.50997 0.90722 0.92297 1.24891 0.96841 0.94783 0.97068 1.69821 1.02087 1.50414 1.29925 0.86498 0.78866 0.77526 0.84882 1.19765 1.21070 1.21065 1.21122 0.94250 0.97649 0.98204 1.21054 0.94070 0.97696 1.01306 0.91048 0.91403 0.91403 0.85837 0.85643 0.90130 0.90131 0.75014 0.75181 0.91996 0.91997 0.97260 0.89448 0.95348 0.95349 0.89435 0.97262 0.93003 0.85643 0.85836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 10.01 36.01 0.36 -0.23 16 2 C -0.08 -0.58 5.88 -104.62 -0.62 -1.19 16 3 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 4 C -0.09 -0.77 9.70 -39.58 -0.38 -1.15 16 5 C -0.12 -1.01 5.25 -104.63 -0.55 -1.56 16 6 C 0.16 1.58 5.80 -5.20 -0.03 1.55 16 7 N -0.70 -8.45 5.54 -61.91 -0.34 -8.80 16 8 C 0.51 7.82 7.89 -11.58 -0.09 7.73 16 9 O -0.52 -8.99 16.48 5.50 0.09 -8.89 16 10 C 0.50 8.78 7.89 -11.58 -0.09 8.69 16 11 O -0.54 -10.37 16.48 5.50 0.09 -10.28 16 12 N -0.68 -12.73 4.95 -60.73 -0.30 -13.03 16 13 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 14 C 0.05 1.27 0.50 -155.65 -0.08 1.19 16 15 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 16 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 17 C -0.51 -13.13 8.01 -34.44 -0.28 -13.41 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.88 -23.60 9.35 55.43 0.52 -23.08 16 21 Si 0.89 20.64 29.54 -169.99 -5.02 15.61 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C -0.09 -0.77 9.70 -39.58 -0.38 -1.15 16 26 C -0.12 -0.93 9.70 -39.58 -0.38 -1.31 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 29 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 30 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 31 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 34 H 0.41 4.75 7.94 -40.82 -0.32 4.43 16 35 H 0.41 7.56 5.63 -40.82 -0.23 7.33 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 39 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 43 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 44 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 380.28 15.07 5.73 5.73 Total: -1.00 -28.95 380.28 -8.57 -37.52 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.92 Total: 8.57 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: -2.42 Total: -3.36 kcal Atomic # 7 Polarization: -44.78 SS G_CDS: -0.13 Total: -44.91 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: 0.18 Total: -19.17 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.95 -8.57 -37.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420679827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.307 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds