Wall clock time and date at job start Tue Mar 31 2020 13:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 C 1.50693 * 120.00207 * 179.72405 * 5 4 3 7 7 N 1.46499 * 109.47329 * 89.99403 * 6 5 4 8 8 C 1.34779 * 120.00064 * 180.02562 * 7 6 5 9 9 O 1.21342 * 120.00352 * 359.97438 * 8 7 6 10 10 C 1.49454 * 119.99764 * 180.02562 * 8 7 6 11 11 O 1.21350 * 120.00191 * 359.97438 * 10 8 7 12 12 N 1.34779 * 119.99764 * 179.97438 * 10 8 7 13 13 C 1.46496 * 119.99747 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46896 * 179.97438 * 13 12 10 15 15 C 1.52998 * 109.47305 * 300.00424 * 14 13 12 16 16 C 1.53006 * 109.46735 * 60.00667 * 14 13 12 17 17 C 1.50706 * 109.47019 * 180.02562 * 14 13 12 18 18 H 1.07999 * 119.99785 * 0.02562 * 17 14 13 19 19 C 1.37873 * 119.99902 * 180.02562 * 17 14 13 20 20 N 1.31517 * 119.99914 * 0.02562 * 19 17 14 21 21 Si 1.86797 * 120.00074 * 180.02562 * 19 17 14 22 22 H 1.48494 * 109.46992 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47022 * 119.99899 * 21 19 17 24 24 H 1.48497 * 109.47189 * 239.99898 * 21 19 17 25 25 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 26 26 C 1.38234 * 120.00033 * 0.49775 * 25 5 4 27 27 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 28 28 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 29 29 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 30 30 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 31 31 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47097 * 209.99342 * 6 5 4 33 33 H 1.09001 * 109.47081 * 329.99847 * 6 5 4 34 34 H 0.97003 * 120.00275 * 0.02562 * 7 6 5 35 35 H 0.96996 * 120.00045 * 0.02562 * 12 10 8 36 36 H 1.09004 * 109.47753 * 300.00194 * 13 12 10 37 37 H 1.08998 * 109.47358 * 60.00246 * 13 12 10 38 38 H 1.09000 * 109.47052 * 59.99777 * 15 14 13 39 39 H 1.09003 * 109.47076 * 179.97438 * 15 14 13 40 40 H 1.08998 * 109.46902 * 299.99560 * 15 14 13 41 41 H 1.08994 * 109.47218 * 59.99489 * 16 14 13 42 42 H 1.08998 * 109.46702 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.46970 * 299.99823 * 16 14 13 44 44 H 0.97001 * 119.99867 * 179.97438 * 20 19 17 45 45 H 1.07999 * 119.99934 * 180.25938 * 25 5 4 46 46 H 1.08001 * 120.00294 * 179.76453 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 6 5.7787 0.0000 -0.0101 7 7 6.2723 -0.0026 1.3692 8 6 7.5983 -0.0026 1.6104 9 8 8.3834 -0.0009 0.6852 10 6 8.1018 -0.0058 3.0176 11 8 7.3167 -0.0080 3.9430 12 7 9.4278 -0.0063 3.2588 13 6 9.9213 -0.0089 4.6382 14 6 11.4514 -0.0095 4.6323 15 6 11.9581 -1.2577 3.9070 16 6 11.9591 1.2409 3.9114 17 6 11.9591 -0.0128 6.0513 18 1 11.2604 -0.0147 6.8748 19 6 13.3156 -0.0134 6.2981 20 7 14.1664 -0.0106 5.2952 21 14 13.9449 -0.0182 8.0568 22 1 12.7935 -0.0215 8.9945 23 1 14.7709 -1.2313 8.2837 24 1 14.7708 1.1936 8.2903 25 6 3.5805 -1.1972 0.0010 26 6 2.1982 -1.1972 0.0009 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6582 2.1324 -0.0004 31 1 4.1205 2.1325 0.0001 32 1 6.1400 -0.8891 -0.5270 33 1 6.1401 0.8909 -0.5236 34 1 5.6448 -0.0044 2.1089 35 1 10.0553 -0.0042 2.5192 36 1 9.5600 0.8802 5.1551 37 1 9.5600 -0.8998 5.1517 38 1 11.5909 -1.2557 2.8807 39 1 13.0481 -1.2579 3.9024 40 1 11.5964 -2.1484 4.4206 41 1 11.5981 2.1300 4.4281 42 1 13.0491 1.2402 3.9069 43 1 11.5919 1.2429 2.8851 44 1 15.1207 -0.0107 5.4688 45 1 4.1205 -2.1325 0.0013 46 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420679827.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:01 Heat of formation + Delta-G solvation = -77.566948 kcal Electronic energy + Delta-G solvation = -25603.907220 eV Core-core repulsion = 21878.198034 eV Total energy + Delta-G solvation = -3725.709186 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.75117 -40.46722 -39.62389 -38.19641 -36.49716 -35.03874 -33.58854 -32.74223 -31.85969 -29.68563 -27.88102 -27.58620 -27.21951 -25.91188 -24.06279 -23.66042 -21.79708 -21.49423 -20.71468 -19.78288 -18.05026 -17.71511 -17.19202 -17.18278 -16.61768 -16.47490 -16.46229 -16.07195 -15.65783 -15.51548 -14.95901 -14.75506 -14.54007 -14.48526 -14.31529 -14.04533 -13.75385 -13.63354 -13.21775 -13.14114 -12.93174 -12.92184 -12.73893 -12.71117 -12.55897 -12.28013 -12.11921 -12.03605 -11.87216 -11.50848 -11.30508 -10.79541 -10.66629 -10.41762 -10.37693 -10.12556 -9.85582 -9.54745 -8.01415 -6.17719 0.20900 0.33743 0.47638 1.41978 1.43169 1.48034 1.56955 2.13849 2.45378 2.63911 2.94685 3.22431 3.47408 3.60736 3.86523 4.06614 4.12041 4.23186 4.34447 4.47149 4.51565 4.60788 4.63138 4.67925 4.84638 4.85407 4.92490 4.93937 5.04124 5.05825 5.07472 5.16771 5.17315 5.21651 5.27025 5.44483 5.48162 5.61373 5.64905 5.68045 5.68731 5.92843 6.07173 6.11326 6.19035 6.37558 6.41472 6.71563 6.86484 6.95780 7.50176 8.98014 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033908 B = 0.002043 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.572596 B =13700.274544 C =14034.841230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.132 4.132 4 C -0.102 4.102 5 C -0.126 4.126 6 C 0.162 3.838 7 N -0.684 5.684 8 C 0.514 3.486 9 O -0.540 6.540 10 C 0.498 3.502 11 O -0.552 6.552 12 N -0.681 5.681 13 C 0.143 3.857 14 C 0.048 3.952 15 C -0.123 4.123 16 C -0.123 4.123 17 C -0.524 4.524 18 H 0.051 0.949 19 C 0.025 3.975 20 N -0.901 5.901 21 Si 0.949 3.051 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.102 4.102 26 C -0.132 4.132 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.140 0.860 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.417 0.583 35 H 0.413 0.587 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.030 0.970 39 H 0.063 0.937 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.063 0.937 43 H 0.030 0.970 44 H 0.260 0.740 45 H 0.132 0.868 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.678 0.032 -13.430 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.084 4.084 3 C -0.150 4.150 4 C -0.120 4.120 5 C -0.127 4.127 6 C 0.040 3.960 7 N -0.337 5.337 8 C 0.295 3.705 9 O -0.418 6.418 10 C 0.278 3.722 11 O -0.431 6.431 12 N -0.333 5.333 13 C 0.020 3.980 14 C 0.048 3.952 15 C -0.181 4.181 16 C -0.181 4.181 17 C -0.562 4.562 18 H 0.070 0.930 19 C -0.175 4.175 20 N -0.539 5.539 21 Si 0.776 3.224 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.121 4.121 26 C -0.150 4.150 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.255 0.745 35 H 0.251 0.749 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.082 0.918 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.150 0.850 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -24.462 0.031 -13.474 27.927 hybrid contribution 0.815 -0.002 1.043 1.323 sum -23.647 0.029 -12.431 26.715 Atomic orbital electron populations 1.20872 0.89508 1.03695 1.03195 1.20362 0.97551 0.93115 0.97418 1.21313 0.93966 0.98638 1.01066 1.21290 0.94810 0.97774 0.98174 1.19746 0.93764 0.94316 1.04836 1.20384 0.90146 1.03915 0.81536 1.45852 1.05542 1.71789 1.10530 1.19992 0.83934 0.77894 0.88698 1.90755 1.56160 1.49316 1.45531 1.20339 0.83660 0.78492 0.89697 1.90718 1.55932 1.50379 1.46061 1.46068 1.06181 1.70044 1.10980 1.21555 0.96153 1.00377 0.79911 1.18410 0.88130 0.93372 0.95316 1.21699 1.03001 0.97070 0.96334 1.21699 1.03015 0.97059 0.96339 1.21259 0.91939 1.51100 0.91920 0.93050 1.25507 0.97128 0.94737 1.00107 1.69934 1.02129 1.50700 1.31186 0.85648 0.78174 0.77355 0.81264 1.19649 1.20927 1.20915 1.21291 0.94810 0.97774 0.98177 1.21314 0.93966 0.98638 1.01065 0.90143 0.90721 0.90722 0.84255 0.84989 0.89797 0.89797 0.74543 0.74868 0.92712 0.92719 0.95143 0.91802 0.95754 0.95754 0.91788 0.95144 0.93065 0.84995 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.01 71.24 0.71 -0.19 16 2 C -0.08 -1.07 5.88 -19.86 -0.12 -1.19 16 3 C -0.13 -1.75 9.70 22.27 0.22 -1.53 16 4 C -0.10 -1.52 9.70 22.27 0.22 -1.31 16 5 C -0.13 -2.03 5.25 -19.87 -0.10 -2.14 16 6 C 0.16 2.97 5.80 85.63 0.50 3.47 16 7 N -0.68 -15.55 5.54 -468.15 -2.59 -18.14 16 8 C 0.51 15.23 7.89 87.27 0.69 15.92 16 9 O -0.54 -17.98 16.48 -3.22 -0.05 -18.03 16 10 C 0.50 17.15 7.89 87.27 0.69 17.84 16 11 O -0.55 -20.91 16.48 -3.25 -0.05 -20.97 16 12 N -0.68 -24.91 4.95 -464.40 -2.30 -27.21 16 13 C 0.14 5.96 4.50 86.38 0.39 6.35 16 14 C 0.05 2.25 0.50 -52.92 -0.03 2.22 16 15 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 16 C -0.12 -5.62 8.08 71.98 0.58 -5.04 16 17 C -0.52 -27.29 8.01 25.60 0.21 -27.09 16 18 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 19 C 0.02 1.30 5.15 84.65 0.44 1.74 16 20 N -0.90 -48.35 9.35 21.45 0.20 -48.15 16 21 Si 0.95 42.37 29.54 68.60 2.03 44.39 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.10 -1.53 9.70 22.27 0.22 -1.31 16 26 C -0.13 -1.75 9.70 22.27 0.22 -1.53 16 27 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 29 H 0.07 0.49 8.09 -2.39 -0.02 0.47 16 30 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 31 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 32 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 33 H 0.08 1.52 8.09 -2.39 -0.02 1.50 16 34 H 0.42 9.03 7.94 -92.71 -0.74 8.29 16 35 H 0.41 14.74 5.63 -92.71 -0.52 14.22 16 36 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 39 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 40 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.06 3.24 6.07 -2.39 -0.01 3.22 16 43 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 44 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 45 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -60.39 380.28 2.36 -58.03 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.26 Total: 28.91 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.40 Total: 1.17 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -4.69 Total: -93.50 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -0.11 Total: -39.00 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -60.39 2.36 -58.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420679827.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.536 kcal (2) G-P(sol) polarization free energy of solvation -60.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds