Wall clock time and date at job start Tue Mar 31 2020 12:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.66447 * 2 1 4 4 C 1.54699 * 110.74809 * 236.58982 * 2 1 3 5 5 C 1.51666 * 101.92328 * 267.01688 * 4 2 1 6 6 C 1.37701 * 132.09874 * 164.62251 * 5 4 2 7 7 C 1.38919 * 119.92182 * 180.75232 * 6 5 4 8 8 N 1.40110 * 120.18908 * 179.64876 * 7 6 5 9 9 C 1.34774 * 120.00174 * 326.72393 * 8 7 6 10 10 O 1.21288 * 120.00306 * 354.73020 * 9 8 7 11 11 C 1.50700 * 119.99828 * 175.00431 * 9 8 7 12 12 H 1.09005 * 109.47310 * 319.72378 * 11 9 8 13 13 N 1.46901 * 109.47199 * 199.72472 * 11 9 8 14 14 C 1.53002 * 109.47179 * 79.72411 * 11 9 8 15 15 C 1.52999 * 109.47039 * 185.00296 * 14 11 9 16 16 C 1.50702 * 109.47120 * 180.02562 * 15 14 11 17 17 H 1.08007 * 119.99929 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00236 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00132 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00007 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47126 * 89.99684 * 20 18 16 22 22 H 1.48501 * 109.47146 * 210.00021 * 20 18 16 23 23 H 1.48501 * 109.46893 * 330.00005 * 20 18 16 24 24 C 1.38866 * 119.61926 * 359.38314 * 7 6 5 25 25 C 1.37866 * 120.27754 * 0.09656 * 24 7 6 26 26 C 1.38881 * 107.04608 * 344.48135 * 5 4 2 27 27 O 1.36230 * 111.21532 * 359.10405 * 26 5 4 28 28 H 1.09001 * 109.47211 * 298.23749 * 1 2 3 29 29 H 1.09002 * 109.47034 * 58.23864 * 1 2 3 30 30 H 1.08998 * 109.46974 * 178.24154 * 1 2 3 31 31 H 1.08998 * 109.46917 * 181.75497 * 3 2 1 32 32 H 1.08996 * 109.47370 * 301.76407 * 3 2 1 33 33 H 1.09002 * 109.47231 * 61.76215 * 3 2 1 34 34 H 1.09000 * 110.94323 * 25.17038 * 4 2 1 35 35 H 1.08994 * 110.94100 * 148.86142 * 4 2 1 36 36 H 1.08006 * 120.03978 * 0.47008 * 6 5 4 37 37 H 0.97006 * 119.99558 * 146.72100 * 8 7 6 38 38 H 1.00896 * 110.99812 * 300.00348 * 13 11 9 39 39 H 1.00901 * 111.00110 * 63.95600 * 13 11 9 40 40 H 1.09002 * 109.46760 * 304.99869 * 14 11 9 41 41 H 1.08999 * 109.47124 * 64.99739 * 14 11 9 42 42 H 1.09002 * 109.46996 * 299.99428 * 15 14 11 43 43 H 1.08992 * 109.47727 * 60.00129 * 15 14 11 44 44 H 0.96996 * 119.99815 * 179.97438 * 19 18 16 45 45 H 1.07997 * 119.86361 * 180.12214 * 24 7 6 46 46 H 1.08000 * 119.83392 * 180.12281 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 6 2.0780 -0.7966 -1.2076 5 6 2.2613 -2.1799 -0.6134 6 6 2.4513 -3.4152 -1.1914 7 6 2.5772 -4.5431 -0.3903 8 7 2.7634 -5.8037 -0.9728 9 6 2.1916 -6.0889 -2.1595 10 8 1.4392 -5.2910 -2.6775 11 6 2.4824 -7.4018 -2.8398 12 1 3.5391 -7.6439 -2.7259 13 7 2.1555 -7.2961 -4.2681 14 6 1.6349 -8.5050 -2.2029 15 6 2.0198 -9.8568 -2.8072 16 6 1.1846 -10.9434 -2.1803 17 1 0.4528 -10.6946 -1.4259 18 6 1.3547 -12.2550 -2.5698 19 7 0.6261 -13.2033 -2.0223 20 14 2.6199 -12.6852 -3.8750 21 1 3.9246 -12.9691 -3.2252 22 1 2.1689 -13.8849 -4.6251 23 1 2.7718 -11.5435 -4.8124 24 6 2.5230 -4.4133 0.9912 25 6 2.3433 -3.1733 1.5663 26 6 2.2116 -2.0397 0.7674 27 8 2.0393 -0.7364 1.1247 28 1 -0.3634 0.4862 0.9054 29 1 -0.3633 0.5410 -0.8738 30 1 -0.3633 -1.0272 -0.0315 31 1 3.1592 1.4090 -0.0315 32 1 1.6920 1.9625 -0.8737 33 1 1.7432 1.9431 0.9054 34 1 1.3545 -0.8155 -2.0226 35 1 3.0308 -0.3878 -1.5439 36 1 2.4979 -3.5076 -2.2665 37 1 3.3039 -6.4712 -0.5219 38 1 1.1806 -7.0721 -4.4002 39 1 2.7473 -6.6189 -4.7254 40 1 1.8121 -8.5241 -1.1275 41 1 0.5799 -8.3086 -2.3938 42 1 1.8426 -9.8377 -3.8826 43 1 3.0747 -10.0532 -2.6162 44 1 0.7455 -14.1259 -2.2966 45 1 2.6224 -5.2873 1.6178 46 1 2.3042 -3.0803 2.6416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424132833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:23 Heat of formation + Delta-G solvation = -53.183189 kcal Electronic energy + Delta-G solvation = -26122.076841 eV Core-core repulsion = 22397.425014 eV Total energy + Delta-G solvation = -3724.651827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.60838 -40.34499 -37.88521 -35.45124 -34.62720 -34.00188 -32.80052 -31.71184 -30.55168 -29.43608 -27.87354 -27.12680 -26.51881 -24.03940 -22.52646 -21.80098 -20.98769 -20.49274 -19.93864 -17.79499 -17.57699 -17.05964 -16.70997 -16.18114 -15.80656 -15.70821 -14.89290 -14.66675 -14.62181 -14.19827 -14.10940 -13.81076 -13.57602 -13.49633 -13.19113 -12.99975 -12.82366 -12.62963 -12.48263 -12.45021 -12.39872 -12.16770 -11.71532 -11.46817 -11.39292 -11.08816 -10.94793 -10.89002 -10.42511 -9.97510 -9.95927 -9.81736 -9.62590 -9.14086 -9.04547 -8.56893 -8.46821 -7.82786 -6.01240 -3.99221 1.04286 1.17176 2.52420 2.86831 3.08751 3.34366 3.42499 3.49897 3.55293 4.08861 4.15051 4.41770 4.49571 4.58408 4.67682 4.70253 4.88056 4.89008 5.05271 5.10794 5.18190 5.22819 5.28299 5.29518 5.34682 5.37135 5.44957 5.51684 5.58259 5.64747 5.76259 5.79634 5.83994 6.12782 6.19751 6.23508 6.24348 6.41318 6.59252 6.81777 7.03178 7.14346 7.31105 7.36243 7.54693 7.58247 7.83854 8.05839 8.55583 9.03244 9.61458 11.12146 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030175 B = 0.002315 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.709082 B =12092.891545 C =12462.710944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.102 3.898 3 C -0.141 4.141 4 C -0.100 4.100 5 C -0.155 4.155 6 C -0.073 4.073 7 C 0.125 3.875 8 N -0.671 5.671 9 C 0.484 3.516 10 O -0.533 6.533 11 C 0.077 3.923 12 H 0.102 0.898 13 N -0.809 5.809 14 C -0.089 4.089 15 C -0.004 4.004 16 C -0.522 4.522 17 H 0.069 0.931 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.260 1.260 24 C -0.112 4.112 25 C -0.118 4.118 26 C 0.087 3.913 27 O -0.298 6.298 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.415 0.585 38 H 0.351 0.649 39 H 0.336 0.664 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.009 0.991 44 H 0.262 0.738 45 H 0.137 0.863 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.974 28.240 4.087 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.064 3.936 3 C -0.198 4.198 4 C -0.137 4.137 5 C -0.156 4.156 6 C -0.093 4.093 7 C 0.031 3.969 8 N -0.317 5.317 9 C 0.271 3.729 10 O -0.409 6.409 11 C -0.039 4.039 12 H 0.120 0.880 13 N -0.337 5.337 14 C -0.127 4.127 15 C -0.042 4.042 16 C -0.560 4.560 17 H 0.087 0.913 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.184 1.184 24 C -0.132 4.132 25 C -0.138 4.138 26 C 0.041 3.959 27 O -0.213 6.213 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.251 0.749 38 H 0.165 0.835 39 H 0.148 0.852 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.053 0.947 43 H 0.027 0.973 44 H 0.072 0.928 45 H 0.154 0.846 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.645 27.905 3.786 28.721 hybrid contribution 0.561 0.219 -0.198 0.634 sum 6.206 28.124 3.588 29.023 Atomic orbital electron populations 1.22201 0.93410 1.03387 1.03088 1.22718 0.94379 0.92807 0.83692 1.21831 1.01932 0.92762 1.03238 1.21870 1.02587 0.91039 0.98188 1.20548 1.06321 0.94954 0.93806 1.20190 0.99440 0.89082 1.00593 1.17581 1.02520 0.85177 0.91649 1.43771 1.51938 1.13564 1.22396 1.22930 0.78693 0.90768 0.80529 1.90667 1.34869 1.50638 1.64696 1.21909 1.02727 0.90456 0.88815 0.87994 1.59025 1.10613 1.55419 1.08651 1.21503 0.98340 0.94197 0.98655 1.19488 0.96032 0.91053 0.97590 1.21167 1.21099 0.90737 1.23011 0.91299 1.25024 0.95872 0.96432 0.96223 1.69923 1.40630 1.00588 1.43327 0.86769 0.81716 0.78184 0.82640 1.20501 1.21602 1.18422 1.20663 1.02173 0.97385 0.92997 1.20004 1.05271 0.88809 0.99668 1.19468 0.98707 0.85006 0.92676 1.86869 1.80250 1.16445 1.37766 0.91307 0.90688 0.91673 0.91446 0.90326 0.91231 0.88989 0.89116 0.84762 0.74880 0.83467 0.85222 0.92109 0.92057 0.94738 0.97282 0.92817 0.84555 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 8.85 37.16 0.33 -0.95 16 2 C 0.10 0.88 1.26 -89.73 -0.11 0.77 16 3 C -0.14 -0.85 8.96 37.16 0.33 -0.52 16 4 C -0.10 -0.91 6.18 -26.51 -0.16 -1.07 16 5 C -0.15 -1.85 6.26 -104.10 -0.65 -2.50 16 6 C -0.07 -0.95 8.65 -39.53 -0.34 -1.30 16 7 C 0.13 1.57 6.29 -83.59 -0.53 1.05 16 8 N -0.67 -8.08 5.35 -9.81 -0.05 -8.14 16 9 C 0.48 6.95 6.81 -10.99 -0.07 6.88 16 10 O -0.53 -8.96 13.95 5.55 0.08 -8.88 16 11 C 0.08 1.14 3.15 -68.86 -0.22 0.92 16 12 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 13 N -0.81 -11.98 8.44 -5.65 -0.05 -12.02 16 14 C -0.09 -1.64 4.78 -26.73 -0.13 -1.77 16 15 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 16 C -0.52 -14.68 9.66 -34.44 -0.33 -15.02 16 17 H 0.07 2.09 7.99 -52.48 -0.42 1.67 16 18 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 19 N -0.91 -27.95 13.96 55.43 0.77 -27.18 16 20 Si 0.88 21.69 27.47 -169.99 -4.67 17.02 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 24 C -0.11 -1.22 9.94 -39.49 -0.39 -1.61 16 25 C -0.12 -1.30 10.06 -39.32 -0.40 -1.70 16 26 C 0.09 1.04 6.95 -38.95 -0.27 0.77 16 27 O -0.30 -3.41 10.53 -20.47 -0.22 -3.63 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.76 7.92 -51.93 -0.41 0.35 16 35 H 0.09 0.71 7.91 -51.93 -0.41 0.30 16 36 H 0.13 1.87 6.43 -52.48 -0.34 1.54 16 37 H 0.41 3.94 8.82 -40.82 -0.36 3.58 16 38 H 0.35 5.34 8.58 -39.29 -0.34 5.01 16 39 H 0.34 4.20 9.06 -39.29 -0.36 3.85 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.03 0.82 6.81 -51.93 -0.35 0.47 16 43 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 44 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 46 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -33.83 376.40 -8.81 -42.64 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.19 Total: 8.97 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -3.15 Total: -14.46 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.67 Total: -47.34 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.14 Total: -12.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.83 -8.81 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424132833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.547 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds