Wall clock time and date at job start Tue Mar 31 2020 12:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 110.66447 * 2 1 4 4 C 1.54699 * 110.74809 * 236.58982 * 2 1 3 5 5 C 1.51666 * 101.92328 * 267.01688 * 4 2 1 6 6 C 1.37701 * 132.09874 * 164.62251 * 5 4 2 7 7 C 1.38919 * 119.92182 * 180.75232 * 6 5 4 8 8 N 1.40110 * 120.18908 * 179.64876 * 7 6 5 9 9 C 1.34774 * 120.00174 * 326.72393 * 8 7 6 10 10 O 1.21288 * 120.00306 * 354.73020 * 9 8 7 11 11 C 1.50700 * 119.99828 * 175.00431 * 9 8 7 12 12 H 1.09005 * 109.47310 * 319.72378 * 11 9 8 13 13 N 1.46901 * 109.47199 * 199.72472 * 11 9 8 14 14 C 1.53002 * 109.47179 * 79.72411 * 11 9 8 15 15 C 1.52999 * 109.47039 * 185.00296 * 14 11 9 16 16 C 1.50702 * 109.47120 * 180.02562 * 15 14 11 17 17 H 1.08007 * 119.99929 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00236 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00132 * 179.97438 * 18 16 15 20 20 Si 1.86805 * 120.00007 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47126 * 89.99684 * 20 18 16 22 22 H 1.48501 * 109.47146 * 210.00021 * 20 18 16 23 23 H 1.48501 * 109.46893 * 330.00005 * 20 18 16 24 24 C 1.38866 * 119.61926 * 359.38314 * 7 6 5 25 25 C 1.37866 * 120.27754 * 0.09656 * 24 7 6 26 26 C 1.38881 * 107.04608 * 344.48135 * 5 4 2 27 27 O 1.36230 * 111.21532 * 359.10405 * 26 5 4 28 28 H 1.09001 * 109.47211 * 298.23749 * 1 2 3 29 29 H 1.09002 * 109.47034 * 58.23864 * 1 2 3 30 30 H 1.08998 * 109.46974 * 178.24154 * 1 2 3 31 31 H 1.08998 * 109.46917 * 181.75497 * 3 2 1 32 32 H 1.08996 * 109.47370 * 301.76407 * 3 2 1 33 33 H 1.09002 * 109.47231 * 61.76215 * 3 2 1 34 34 H 1.09000 * 110.94323 * 25.17038 * 4 2 1 35 35 H 1.08994 * 110.94100 * 148.86142 * 4 2 1 36 36 H 1.08006 * 120.03978 * 0.47008 * 6 5 4 37 37 H 0.97006 * 119.99558 * 146.72100 * 8 7 6 38 38 H 1.00896 * 110.99812 * 300.00348 * 13 11 9 39 39 H 1.00901 * 111.00110 * 63.95600 * 13 11 9 40 40 H 1.09002 * 109.46760 * 304.99869 * 14 11 9 41 41 H 1.08999 * 109.47124 * 64.99739 * 14 11 9 42 42 H 1.09002 * 109.46996 * 299.99428 * 15 14 11 43 43 H 1.08992 * 109.47727 * 60.00129 * 15 14 11 44 44 H 0.96996 * 119.99815 * 179.97438 * 19 18 16 45 45 H 1.07997 * 119.86361 * 180.12214 * 24 7 6 46 46 H 1.08000 * 119.83392 * 180.12281 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 6 2.0780 -0.7966 -1.2076 5 6 2.2613 -2.1799 -0.6134 6 6 2.4513 -3.4152 -1.1914 7 6 2.5772 -4.5431 -0.3903 8 7 2.7634 -5.8037 -0.9728 9 6 2.1916 -6.0889 -2.1595 10 8 1.4392 -5.2910 -2.6775 11 6 2.4824 -7.4018 -2.8398 12 1 3.5391 -7.6439 -2.7259 13 7 2.1555 -7.2961 -4.2681 14 6 1.6349 -8.5050 -2.2029 15 6 2.0198 -9.8568 -2.8072 16 6 1.1846 -10.9434 -2.1803 17 1 0.4528 -10.6946 -1.4259 18 6 1.3547 -12.2550 -2.5698 19 7 0.6261 -13.2033 -2.0223 20 14 2.6199 -12.6852 -3.8750 21 1 3.9246 -12.9691 -3.2252 22 1 2.1689 -13.8849 -4.6251 23 1 2.7718 -11.5435 -4.8124 24 6 2.5230 -4.4133 0.9912 25 6 2.3433 -3.1733 1.5663 26 6 2.2116 -2.0397 0.7674 27 8 2.0393 -0.7364 1.1247 28 1 -0.3634 0.4862 0.9054 29 1 -0.3633 0.5410 -0.8738 30 1 -0.3633 -1.0272 -0.0315 31 1 3.1592 1.4090 -0.0315 32 1 1.6920 1.9625 -0.8737 33 1 1.7432 1.9431 0.9054 34 1 1.3545 -0.8155 -2.0226 35 1 3.0308 -0.3878 -1.5439 36 1 2.4979 -3.5076 -2.2665 37 1 3.3039 -6.4712 -0.5219 38 1 1.1806 -7.0721 -4.4002 39 1 2.7473 -6.6189 -4.7254 40 1 1.8121 -8.5241 -1.1275 41 1 0.5799 -8.3086 -2.3938 42 1 1.8426 -9.8377 -3.8826 43 1 3.0747 -10.0532 -2.6162 44 1 0.7455 -14.1259 -2.2966 45 1 2.6224 -5.2873 1.6178 46 1 2.3042 -3.0803 2.6416 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424132833.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:21 Heat of formation + Delta-G solvation = -76.766243 kcal Electronic energy + Delta-G solvation = -26123.099479 eV Core-core repulsion = 22397.425014 eV Total energy + Delta-G solvation = -3725.674465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.43358 -41.40587 -38.83074 -36.86331 -35.59017 -34.81735 -34.73077 -32.50374 -32.29168 -30.39950 -28.43531 -28.39661 -27.56229 -25.50002 -23.58630 -22.74055 -22.06020 -21.71183 -21.15578 -19.07255 -18.55197 -18.48916 -17.98887 -17.06533 -16.96579 -16.59896 -16.25825 -15.97362 -15.62654 -15.45532 -15.06812 -14.86369 -14.75951 -14.59629 -14.29089 -14.07319 -13.90579 -13.77840 -13.47500 -13.46902 -13.17357 -12.97423 -12.85283 -12.79088 -12.57406 -12.23843 -12.10159 -11.95841 -11.75088 -11.64119 -11.59225 -11.29521 -11.14727 -10.86835 -10.69957 -9.93471 -9.71609 -8.74299 -8.23904 -6.27188 0.13897 0.26153 1.40968 1.41861 1.44819 1.58364 1.94427 2.25482 2.42574 2.66445 3.12747 3.32108 3.44021 3.53189 3.77451 3.79983 3.85540 4.00001 4.05496 4.11058 4.22697 4.24516 4.46553 4.56488 4.60863 4.65419 4.68829 4.70757 4.78640 4.82277 4.85283 4.97498 5.00859 5.13436 5.14962 5.23784 5.24171 5.32351 5.36208 5.50950 5.66231 5.68558 5.75254 6.03566 6.19353 6.33313 6.34074 6.49756 6.81796 7.00996 7.37339 8.92891 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030175 B = 0.002315 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.709082 B =12092.891545 C =12462.710944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.096 3.904 3 C -0.137 4.137 4 C -0.100 4.100 5 C -0.166 4.166 6 C -0.089 4.089 7 C 0.106 3.894 8 N -0.658 5.658 9 C 0.487 3.513 10 O -0.560 6.560 11 C 0.089 3.911 12 H 0.127 0.873 13 N -0.817 5.817 14 C -0.081 4.081 15 C 0.002 3.998 16 C -0.530 4.530 17 H 0.028 0.972 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.953 3.047 21 H -0.264 1.264 22 H -0.291 1.291 23 H -0.243 1.243 24 C -0.108 4.108 25 C -0.123 4.123 26 C 0.076 3.924 27 O -0.312 6.312 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.427 0.573 38 H 0.347 0.653 39 H 0.350 0.650 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.030 0.970 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.160 0.840 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.844 29.914 3.660 31.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.058 3.942 3 C -0.194 4.194 4 C -0.136 4.136 5 C -0.168 4.168 6 C -0.109 4.109 7 C 0.012 3.988 8 N -0.304 5.304 9 C 0.274 3.726 10 O -0.438 6.438 11 C -0.027 4.027 12 H 0.145 0.855 13 N -0.346 5.346 14 C -0.119 4.119 15 C -0.036 4.036 16 C -0.569 4.569 17 H 0.046 0.954 18 C -0.196 4.196 19 N -0.597 5.597 20 Si 0.776 3.224 21 H -0.189 1.189 22 H -0.217 1.217 23 H -0.167 1.167 24 C -0.128 4.128 25 C -0.143 4.143 26 C 0.030 3.970 27 O -0.227 6.227 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.139 0.861 37 H 0.266 0.734 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.178 0.822 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.545 29.608 3.383 30.741 hybrid contribution -0.108 -0.236 0.035 0.261 sum 7.438 29.372 3.418 30.491 Atomic orbital electron populations 1.22213 0.93004 1.02310 1.04390 1.23010 0.94813 0.93765 0.82565 1.21864 1.01924 0.91083 1.04501 1.21975 1.03464 0.89664 0.98543 1.20838 1.05864 0.95738 0.94333 1.20199 1.00618 0.89990 1.00075 1.17766 1.03589 0.85031 0.92407 1.43607 1.51392 1.13822 1.21596 1.22734 0.78480 0.90350 0.80998 1.90663 1.36153 1.51442 1.65544 1.21707 1.03083 0.89290 0.88643 0.85507 1.59024 1.10736 1.56124 1.08702 1.21294 0.97859 0.93486 0.99305 1.19377 0.95740 0.91518 0.96920 1.21569 1.20689 0.92509 1.22087 0.95386 1.26039 0.98333 0.96353 0.98863 1.70087 1.42966 1.01144 1.45468 0.85617 0.79004 0.78149 0.79626 1.18908 1.21730 1.16651 1.20909 1.01105 0.98255 0.92517 1.20326 1.04576 0.88616 1.00733 1.19735 0.98682 0.85616 0.92937 1.86855 1.80411 1.16266 1.39144 0.90765 0.88605 0.93925 0.91464 0.88122 0.90840 0.88396 0.87883 0.86098 0.73369 0.83947 0.83635 0.91270 0.94131 0.95201 0.95704 0.92710 0.82244 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.85 71.98 0.64 -1.71 16 2 C 0.10 1.52 1.26 -10.21 -0.01 1.51 16 3 C -0.14 -1.37 8.96 71.98 0.65 -0.72 16 4 C -0.10 -1.71 6.18 30.74 0.19 -1.52 16 5 C -0.17 -3.91 6.26 -19.53 -0.12 -4.03 16 6 C -0.09 -2.31 8.65 22.31 0.19 -2.12 16 7 C 0.11 2.58 6.29 38.13 0.24 2.82 16 8 N -0.66 -14.95 5.35 -303.33 -1.62 -16.58 16 9 C 0.49 13.49 6.81 87.66 0.60 14.09 16 10 O -0.56 -18.70 13.95 -3.06 -0.04 -18.74 16 11 C 0.09 2.46 3.15 44.17 0.14 2.60 16 12 H 0.13 2.92 8.14 -2.38 -0.02 2.90 16 13 N -0.82 -22.90 8.44 -171.79 -1.45 -24.35 16 14 C -0.08 -2.94 4.78 30.59 0.15 -2.79 16 15 C 0.00 0.09 3.93 29.85 0.12 0.20 16 16 C -0.53 -30.24 9.66 25.60 0.25 -30.00 16 17 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 18 C 0.00 0.01 5.47 84.65 0.46 0.47 16 19 N -0.96 -60.30 13.96 21.45 0.30 -60.00 16 20 Si 0.95 44.20 27.47 68.60 1.88 46.09 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 23 H -0.24 -10.55 6.54 99.48 0.65 -9.90 16 24 C -0.11 -2.20 9.94 22.33 0.22 -1.98 16 25 C -0.12 -2.57 10.06 22.44 0.23 -2.34 16 26 C 0.08 1.77 6.95 22.68 0.16 1.93 16 27 O -0.31 -6.83 10.53 -96.17 -1.01 -7.85 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.04 0.80 8.13 -2.39 -0.02 0.79 16 31 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 32 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.10 1.54 7.92 -2.39 -0.02 1.52 16 35 H 0.10 1.48 7.91 -2.39 -0.02 1.46 16 36 H 0.12 3.43 6.43 -2.91 -0.02 3.41 16 37 H 0.43 7.24 8.82 -92.70 -0.82 6.42 16 38 H 0.35 10.33 8.58 -89.70 -0.77 9.56 16 39 H 0.35 8.11 9.06 -89.69 -0.81 7.30 16 40 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.03 1.37 6.81 -2.39 -0.02 1.35 16 43 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 44 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 45 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 46 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -74.46 376.40 0.70 -73.76 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: -1.44 Total: 31.25 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.08 Total: -23.60 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -2.77 Total: -100.92 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.05 Total: -26.59 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Total: -74.46 0.70 -73.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424132833.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.003 kcal (2) G-P(sol) polarization free energy of solvation -74.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds