Wall clock time and date at job start Tue Mar 31 2020 11:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00325 * 2 1 4 4 H 1.48502 * 109.46997 * 270.00239 * 3 2 1 5 5 H 1.48500 * 109.46876 * 29.99891 * 3 2 1 6 6 H 1.48498 * 109.47244 * 149.99780 * 3 2 1 7 7 C 1.37878 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00034 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00183 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46958 * 180.02562 * 9 7 2 11 11 C 1.46499 * 119.99817 * 273.46514 * 10 9 7 12 12 C 1.50697 * 109.47225 * 270.00169 * 11 10 9 13 13 C 1.38671 * 120.41851 * 90.00472 * 12 11 10 14 14 C 1.38632 * 118.42232 * 180.02562 * 13 12 11 15 15 C 1.38224 * 119.15948 * 359.97438 * 14 13 12 16 16 N 1.31861 * 120.76486 * 0.02562 * 15 14 13 17 17 C 1.31886 * 121.72422 * 359.70520 * 16 15 14 18 18 C 1.34773 * 119.99974 * 93.47180 * 10 9 7 19 19 O 1.21272 * 120.00222 * 185.00914 * 18 10 9 20 20 C 1.50706 * 120.00076 * 5.00509 * 18 10 9 21 21 H 1.09002 * 109.47135 * 32.25660 * 20 18 10 22 22 C 1.52996 * 109.47096 * 272.26130 * 20 18 10 23 23 C 1.53006 * 109.47366 * 180.02562 * 22 20 18 24 24 C 1.52999 * 109.47054 * 59.99369 * 23 22 20 25 25 C 1.52996 * 109.47549 * 300.00519 * 24 23 22 26 26 H 1.09000 * 109.47454 * 300.00243 * 25 24 23 27 27 O 1.42898 * 109.47337 * 179.97438 * 25 24 23 28 28 C 1.53005 * 109.47003 * 152.25966 * 20 18 10 29 29 H 0.97004 * 119.99455 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.46900 * 60.00188 * 9 7 2 31 31 H 1.08999 * 109.47310 * 300.00157 * 9 7 2 32 32 H 1.09000 * 109.47258 * 30.00635 * 11 10 9 33 33 H 1.09003 * 109.46842 * 150.00201 * 11 10 9 34 34 H 1.07998 * 120.78783 * 0.02562 * 13 12 11 35 35 H 1.08003 * 120.42029 * 179.97438 * 14 13 12 36 36 H 1.07996 * 119.61676 * 180.02562 * 15 14 13 37 37 H 1.07997 * 119.61910 * 180.30950 * 17 16 15 38 38 H 1.08998 * 109.47423 * 59.99766 * 22 20 18 39 39 H 1.09003 * 109.47209 * 300.00022 * 22 20 18 40 40 H 1.08999 * 109.47021 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.46368 * 300.00094 * 23 22 20 42 42 H 1.09003 * 109.46692 * 60.00624 * 24 23 22 43 43 H 1.08994 * 109.46987 * 179.97438 * 24 23 22 44 44 H 0.96696 * 114.00027 * 60.00361 * 27 25 24 45 45 H 1.08994 * 109.46838 * 60.00046 * 28 20 18 46 46 H 1.08994 * 109.46823 * 300.00092 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 4.1721 -3.2912 1.2666 12 6 5.5683 -3.0640 1.7861 13 6 5.8398 -1.9937 2.6250 14 6 7.1388 -1.8234 3.0782 15 6 8.1133 -2.7201 2.6820 16 7 7.8188 -3.7269 1.8830 17 6 6.5932 -3.9226 1.4369 18 6 4.2906 -3.1874 -1.1649 19 8 4.6074 -4.3580 -1.1724 20 6 4.2219 -2.4172 -2.4585 21 1 4.4927 -1.3771 -2.2768 22 6 2.7990 -2.4836 -3.0167 23 6 2.7293 -1.7022 -4.3303 24 6 3.7025 -2.3141 -5.3399 25 6 5.1254 -2.2477 -4.7817 26 1 5.3964 -1.2076 -4.6004 27 8 6.0342 -2.8198 -5.7245 28 6 5.1951 -3.0287 -3.4684 29 1 -0.4849 0.8401 -0.0004 30 1 3.8752 -0.6797 0.8894 31 1 3.8746 -0.6809 -0.8905 32 1 3.4491 -2.9220 1.9939 33 1 4.0133 -4.3576 1.1057 34 1 5.0577 -1.3090 2.9183 35 1 7.3863 -1.0005 3.7324 36 1 9.1276 -2.5947 3.0309 37 1 6.3890 -4.7613 0.7878 38 1 2.1057 -2.0480 -2.2972 39 1 2.5281 -3.5237 -3.1983 40 1 1.7157 -1.7499 -4.7281 41 1 3.0004 -0.6621 -4.1489 42 1 3.4315 -3.3543 -5.5212 43 1 3.6525 -1.7577 -6.2758 44 1 6.0432 -2.3739 -6.5825 45 1 4.9243 -4.0687 -3.6500 46 1 6.2088 -2.9813 -3.0707 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439469302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:45 Heat of formation + Delta-G solvation = -86.106152 kcal Electronic energy + Delta-G solvation = -27835.097911 eV Core-core repulsion = 24109.018437 eV Total energy + Delta-G solvation = -3726.079474 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.63392 -40.85498 -39.26218 -37.00837 -36.44456 -34.74591 -33.64283 -32.76988 -31.88090 -30.45422 -29.89498 -27.62951 -24.88467 -24.52217 -24.10144 -23.29583 -22.88696 -21.05111 -19.92520 -19.03721 -18.33672 -18.04240 -17.87225 -17.16926 -17.01216 -16.61442 -16.32232 -16.01675 -15.45711 -15.36906 -15.08437 -14.77040 -14.62429 -14.48244 -14.18497 -14.09619 -13.98233 -13.71071 -13.49999 -13.25514 -13.17447 -12.98395 -12.66582 -12.50934 -12.38595 -12.08606 -12.00472 -11.79958 -11.60455 -11.56543 -11.41247 -10.90609 -10.74488 -10.73484 -10.54554 -10.44592 -9.96889 -9.49178 -8.25644 -6.31368 0.09988 0.31145 1.40697 1.43368 1.51066 1.67272 2.20525 2.36283 2.90668 3.07643 3.25378 3.50223 3.56054 3.69538 3.85320 3.86553 3.98837 4.06103 4.08229 4.15544 4.16099 4.30834 4.32046 4.39628 4.49095 4.54902 4.64187 4.66690 4.70408 4.74745 4.85197 4.87820 4.97281 5.08611 5.14231 5.15185 5.18327 5.25500 5.33637 5.43056 5.45166 5.47834 5.63571 5.76818 6.20196 6.57748 6.73302 6.93544 6.99306 7.22408 7.34958 8.89960 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008373 B = 0.006276 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.196274 B = 4460.356336 C = 6777.714739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.028 3.972 3 Si 0.927 3.073 4 H -0.260 1.260 5 H -0.289 1.289 6 H -0.239 1.239 7 C -0.528 4.528 8 H 0.034 0.966 9 C 0.216 3.784 10 N -0.589 5.589 11 C 0.160 3.840 12 C -0.155 4.155 13 C -0.068 4.068 14 C -0.164 4.164 15 C 0.089 3.911 16 N -0.513 5.513 17 C 0.102 3.898 18 C 0.518 3.482 19 O -0.586 6.586 20 C -0.091 4.091 21 H 0.099 0.901 22 C -0.113 4.113 23 C -0.108 4.108 24 C -0.142 4.142 25 C 0.112 3.888 26 H 0.070 0.930 27 O -0.583 6.583 28 C -0.088 4.088 29 H 0.267 0.733 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.171 0.829 36 H 0.186 0.814 37 H 0.140 0.860 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.396 0.604 45 H 0.058 0.942 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.273 2.495 -2.833 12.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.172 4.172 3 Si 0.750 3.250 4 H -0.185 1.185 5 H -0.215 1.215 6 H -0.162 1.162 7 C -0.566 4.566 8 H 0.052 0.948 9 C 0.095 3.905 10 N -0.318 5.318 11 C 0.037 3.963 12 C -0.158 4.158 13 C -0.095 4.095 14 C -0.183 4.183 15 C -0.069 4.069 16 N -0.222 5.222 17 C -0.055 4.055 18 C 0.308 3.692 19 O -0.467 6.467 20 C -0.112 4.112 21 H 0.117 0.883 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.180 4.180 25 C 0.054 3.946 26 H 0.087 0.913 27 O -0.391 6.391 28 C -0.126 4.126 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.164 0.836 35 H 0.188 0.812 36 H 0.203 0.797 37 H 0.157 0.843 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.246 0.754 45 H 0.077 0.923 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.044 1.025 -2.579 13.336 hybrid contribution -1.338 1.332 0.032 1.888 sum 11.706 2.357 -2.547 12.209 Atomic orbital electron populations 1.70041 1.08243 1.28176 1.51281 1.25623 0.95235 1.02460 0.93835 0.86018 0.79979 0.79172 0.79818 1.18513 1.21474 1.16226 1.21339 0.90660 0.93173 1.51475 0.94770 1.19722 0.93344 0.78905 0.98553 1.47961 1.63176 1.15632 1.04982 1.20140 0.92460 0.97916 0.85833 1.21232 0.97317 0.97649 0.99623 1.21846 0.98351 0.95368 0.93911 1.22495 0.92782 1.01534 1.01532 1.23373 1.01347 0.89510 0.92622 1.67715 1.21057 1.21964 1.11440 1.22621 0.88028 0.98318 0.96511 1.20890 0.75267 0.86962 0.86086 1.90569 1.50938 1.17529 1.87690 1.21160 0.98056 1.00378 0.91609 0.88279 1.21529 0.94284 1.00539 0.98709 1.21413 1.00074 0.99484 0.93595 1.22227 0.94425 1.01969 0.99334 1.21671 0.88725 0.96113 0.88138 0.91256 1.86475 1.63696 1.61281 1.27681 1.21182 0.97993 0.99848 0.93586 0.92378 0.93821 0.93589 0.88906 0.90503 0.83584 0.81191 0.79710 0.84255 0.90863 0.93301 0.90825 0.91067 0.92002 0.88882 0.75396 0.92296 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.77 13.96 21.45 0.30 -52.47 16 2 C 0.03 1.41 5.47 84.66 0.46 1.88 16 3 Si 0.93 37.22 27.47 68.60 1.88 39.11 16 4 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.24 -8.55 6.54 99.48 0.65 -7.90 16 7 C -0.53 -26.10 8.07 25.60 0.21 -25.89 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 9 C 0.22 8.73 4.06 85.63 0.35 9.07 16 10 N -0.59 -23.03 2.44 -830.51 -2.03 -25.06 16 11 C 0.16 5.67 5.61 85.63 0.48 6.15 16 12 C -0.16 -4.89 5.48 -19.77 -0.11 -4.99 16 13 C -0.07 -1.79 9.86 22.47 0.22 -1.57 16 14 C -0.16 -3.46 10.11 22.36 0.23 -3.23 16 15 C 0.09 2.06 11.18 84.69 0.95 3.00 16 16 N -0.51 -15.78 10.36 -195.84 -2.03 -17.81 16 17 C 0.10 3.37 10.86 84.67 0.92 4.29 16 18 C 0.52 20.84 6.75 87.66 0.59 21.43 16 19 O -0.59 -26.00 15.52 -3.01 -0.05 -26.04 16 20 C -0.09 -3.15 1.81 -11.54 -0.02 -3.17 16 21 H 0.10 3.24 6.05 -2.39 -0.01 3.23 16 22 C -0.11 -3.95 5.17 30.59 0.16 -3.79 16 23 C -0.11 -2.94 5.92 30.60 0.18 -2.76 16 24 C -0.14 -3.21 5.54 30.59 0.17 -3.04 16 25 C 0.11 2.77 3.47 30.58 0.11 2.88 16 26 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 27 O -0.58 -13.68 13.32 -148.98 -1.98 -15.66 16 28 C -0.09 -2.81 4.42 30.58 0.14 -2.68 16 29 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 30 H 0.04 1.67 7.15 -2.39 -0.02 1.66 16 31 H 0.05 1.77 5.07 -2.39 -0.01 1.75 16 32 H 0.09 3.21 8.03 -2.39 -0.02 3.19 16 33 H 0.08 2.86 7.31 -2.39 -0.02 2.84 16 34 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 35 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 36 H 0.19 2.87 8.06 -2.91 -0.02 2.85 16 37 H 0.14 4.98 7.89 -2.91 -0.02 4.96 16 38 H 0.07 3.10 6.03 -2.39 -0.01 3.08 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 42 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.40 5.15 9.08 -74.06 -0.67 4.47 16 45 H 0.06 2.11 7.86 -2.39 -0.02 2.09 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -66.97 369.61 1.38 -65.59 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: 0.26 Total: 34.77 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 5.02 Total: -2.43 kcal Atomic # 7 Polarization: -91.58 SS G_CDS: -3.76 Total: -95.34 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -2.03 Total: -41.70 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 1.88 Total: 39.11 kcal Total: -66.97 1.38 -65.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439469302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.517 kcal (2) G-P(sol) polarization free energy of solvation -66.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds