Wall clock time and date at job start Tue Mar 31 2020 11:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48498 * 109.46807 * 240.00211 * 3 2 1 5 5 H 1.48496 * 109.47084 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46949 * 120.00458 * 3 2 1 7 7 C 1.37879 * 119.99872 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46725 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00425 * 263.73816 * 10 9 7 12 12 C 1.50705 * 109.47193 * 270.00393 * 11 10 9 13 13 C 1.38671 * 120.41638 * 89.99965 * 12 11 10 14 14 C 1.38635 * 118.42110 * 180.02562 * 13 12 11 15 15 C 1.38231 * 119.15843 * 359.97438 * 14 13 12 16 16 N 1.31858 * 120.76487 * 0.02562 * 15 14 13 17 17 C 1.31887 * 121.72273 * 359.69537 * 16 15 14 18 18 C 1.34776 * 119.99383 * 83.74590 * 10 9 7 19 19 O 1.21287 * 119.99613 * 184.73087 * 18 10 9 20 20 C 1.50696 * 120.00708 * 4.72693 * 18 10 9 21 21 H 1.09006 * 109.46935 * 316.00702 * 20 18 10 22 22 C 1.53000 * 109.46940 * 76.00049 * 20 18 10 23 23 C 1.53002 * 109.47449 * 180.02562 * 22 20 18 24 24 C 1.53005 * 109.46722 * 300.00255 * 23 22 20 25 25 C 1.53000 * 109.47367 * 59.99694 * 24 23 22 26 26 H 1.08999 * 109.47400 * 179.97438 * 25 24 23 27 27 O 1.42902 * 109.46667 * 59.99978 * 25 24 23 28 28 C 1.52997 * 109.47516 * 196.00234 * 20 18 10 29 29 H 0.96999 * 119.99855 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46740 * 60.00273 * 9 7 2 31 31 H 1.08992 * 109.47191 * 300.00343 * 9 7 2 32 32 H 1.08999 * 109.47294 * 30.00246 * 11 10 9 33 33 H 1.08997 * 109.47162 * 150.00531 * 11 10 9 34 34 H 1.07996 * 120.79543 * 0.02562 * 13 12 11 35 35 H 1.07995 * 120.42371 * 179.97438 * 14 13 12 36 36 H 1.07994 * 119.61673 * 180.02562 * 15 14 13 37 37 H 1.07997 * 119.61610 * 180.31588 * 17 16 15 38 38 H 1.08998 * 109.47157 * 60.00075 * 22 20 18 39 39 H 1.08999 * 109.47400 * 300.00562 * 22 20 18 40 40 H 1.08998 * 109.47374 * 59.99603 * 23 22 20 41 41 H 1.08994 * 109.47291 * 180.02562 * 23 22 20 42 42 H 1.08997 * 109.47136 * 179.97438 * 24 23 22 43 43 H 1.09007 * 109.46764 * 299.99684 * 24 23 22 44 44 H 0.96701 * 114.00271 * 60.00394 * 27 25 24 45 45 H 1.08994 * 109.47061 * 60.00212 * 28 20 18 46 46 H 1.08995 * 109.47000 * 299.99564 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 2.5729 -4.2588 -1.2634 12 6 1.6263 -5.3983 -1.5407 13 6 0.4624 -5.1840 -2.2634 14 6 -0.3789 -6.2615 -2.4939 15 6 -0.0317 -7.5049 -1.9996 16 7 1.0835 -7.6716 -1.3163 17 6 1.9099 -6.6707 -1.0826 18 6 2.7384 -4.0427 1.1579 19 8 3.5902 -4.9061 1.1493 20 6 2.2789 -3.4507 2.4654 21 1 2.2055 -2.3675 2.3679 22 6 0.9082 -4.0238 2.8309 23 6 0.4412 -3.4224 4.1580 24 6 1.4482 -3.7682 5.2569 25 6 2.8189 -3.1951 4.8914 26 1 3.5362 -3.4411 5.6744 27 8 2.7226 -1.7751 4.7632 28 6 3.2859 -3.7970 3.5640 29 1 -0.4850 0.8400 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8896 32 1 2.5148 -3.5327 -2.0742 33 1 3.5909 -4.6416 -1.1907 34 1 0.2171 -4.2012 -2.6378 35 1 -1.2939 -6.1312 -3.0526 36 1 -0.6815 -8.3494 -2.1752 37 1 2.8168 -6.8468 -0.5232 38 1 0.9815 -5.1070 2.9283 39 1 0.1908 -3.7772 2.0482 40 1 0.3679 -2.3393 4.0603 41 1 -0.5350 -3.8311 4.4186 42 1 1.1159 -3.3395 6.2022 43 1 1.5216 -4.8514 5.3546 44 1 2.4313 -1.3263 5.5687 45 1 4.2623 -3.3887 3.3036 46 1 3.3591 -4.8801 3.6614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439469303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:51 Heat of formation + Delta-G solvation = -69.751525 kcal Electronic energy + Delta-G solvation = -28056.879401 eV Core-core repulsion = 24331.509117 eV Total energy + Delta-G solvation = -3725.370284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.16762 -39.52896 -37.96107 -35.23119 -34.69403 -33.01890 -32.08348 -31.43304 -30.49213 -29.49234 -27.49949 -26.01169 -23.57304 -23.24186 -22.63348 -22.16831 -21.56105 -19.59625 -18.29915 -16.91588 -16.75602 -16.51729 -16.27299 -15.77353 -15.72208 -15.12881 -14.85298 -14.40500 -14.35093 -14.13937 -13.58573 -13.47843 -13.18463 -12.80271 -12.69233 -12.53550 -12.20518 -12.16247 -12.00714 -11.79104 -11.56074 -11.30906 -11.20534 -10.98262 -10.76004 -10.70851 -10.53943 -10.35841 -10.10846 -9.94890 -9.79237 -9.57444 -9.41980 -9.24628 -9.02257 -8.67910 -8.49073 -7.75631 -6.17478 -4.24101 1.31377 1.52168 3.26945 3.30814 3.34035 3.43279 3.82549 4.23073 4.36592 4.50289 4.67026 4.94829 4.97471 5.03717 5.12882 5.16285 5.18794 5.24389 5.31881 5.48948 5.53933 5.56042 5.65875 5.69460 5.80182 5.84356 5.91374 6.05425 6.07598 6.17150 6.19589 6.29077 6.34258 6.37728 6.47513 6.56141 6.58619 6.65392 6.72010 6.94512 6.95698 7.23063 7.51972 7.77629 7.91957 8.06593 8.18669 8.30628 8.80325 9.02990 9.43789 10.89109 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009134 B = 0.005962 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.716471 B = 4695.281461 C = 6671.460791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.236 3.764 10 N -0.592 5.592 11 C 0.158 3.842 12 C -0.143 4.143 13 C -0.060 4.060 14 C -0.178 4.178 15 C 0.087 3.913 16 N -0.492 5.492 17 C 0.115 3.885 18 C 0.526 3.474 19 O -0.576 6.576 20 C -0.100 4.100 21 H 0.123 0.877 22 C -0.105 4.105 23 C -0.111 4.111 24 C -0.151 4.151 25 C 0.106 3.894 26 H 0.050 0.950 27 O -0.554 6.554 28 C -0.089 4.089 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.157 0.843 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.067 0.933 44 H 0.370 0.630 45 H 0.068 0.932 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.016 -7.953 3.956 8.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.117 3.883 10 N -0.321 5.321 11 C 0.033 3.967 12 C -0.146 4.146 13 C -0.086 4.086 14 C -0.198 4.198 15 C -0.070 4.070 16 N -0.200 5.200 17 C -0.042 4.042 18 C 0.315 3.685 19 O -0.457 6.457 20 C -0.121 4.121 21 H 0.141 0.859 22 C -0.143 4.143 23 C -0.149 4.149 24 C -0.189 4.189 25 C 0.047 3.953 26 H 0.068 0.932 27 O -0.359 6.359 28 C -0.127 4.127 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.174 0.826 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.215 0.785 45 H 0.087 0.913 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.345 -9.219 3.643 9.918 hybrid contribution -0.206 2.053 0.164 2.070 sum -0.551 -7.166 3.807 8.133 Atomic orbital electron populations 1.69908 1.05961 1.27341 1.49711 1.24890 0.94806 0.99157 0.94594 0.86597 0.79629 0.82637 0.78911 1.20253 1.21233 1.19860 1.21440 0.93559 0.90427 1.52113 0.92184 1.19539 0.87595 0.82412 0.98783 1.48239 1.45365 1.34064 1.04468 1.20127 0.96599 0.91917 0.88023 1.21464 0.97571 0.97011 0.98567 1.21632 0.92638 0.99388 0.94951 1.22099 1.01003 0.94138 1.02523 1.22690 0.93765 0.96484 0.94040 1.67705 1.04086 1.34745 1.13481 1.22819 0.98098 0.87982 0.95328 1.20596 0.80635 0.81312 0.85937 1.90548 1.33259 1.33968 1.87954 1.21189 0.95226 1.04422 0.91222 0.85909 1.21466 0.95846 0.99154 0.97811 1.21402 0.97240 1.02224 0.93999 1.22262 0.96610 1.01357 0.98630 1.21803 0.94855 0.81330 0.97353 0.93224 1.86677 1.90672 1.18550 1.39960 1.21337 0.98786 1.00297 0.92293 0.92544 0.94931 0.93755 0.89431 0.89654 0.84583 0.85108 0.83329 0.82551 0.92728 0.90814 0.90614 0.92382 0.92167 0.91384 0.78452 0.91290 0.90419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.03 13.29 55.43 0.74 -23.29 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.54 -13.74 8.57 -34.44 -0.30 -14.04 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.24 5.43 4.79 -5.19 -0.02 5.40 16 10 N -0.59 -12.15 2.46 -176.44 -0.43 -12.58 16 11 C 0.16 2.83 5.57 -5.19 -0.03 2.81 16 12 C -0.14 -2.38 5.48 -104.48 -0.57 -2.95 16 13 C -0.06 -0.90 9.86 -39.28 -0.39 -1.29 16 14 C -0.18 -2.35 10.11 -39.44 -0.40 -2.75 16 15 C 0.09 1.20 11.18 -17.54 -0.20 1.00 16 16 N -0.49 -8.04 10.36 -13.25 -0.14 -8.18 16 17 C 0.11 1.94 10.86 -17.55 -0.19 1.75 16 18 C 0.53 10.89 6.81 -10.99 -0.07 10.82 16 19 O -0.58 -12.54 15.37 5.55 0.09 -12.45 16 20 C -0.10 -1.89 1.54 -91.78 -0.14 -2.03 16 21 H 0.12 2.71 6.24 -51.93 -0.32 2.38 16 22 C -0.11 -1.78 4.93 -26.73 -0.13 -1.91 16 23 C -0.11 -1.61 5.78 -26.73 -0.15 -1.77 16 24 C -0.15 -1.85 5.64 -26.73 -0.15 -2.00 16 25 C 0.11 1.45 3.77 -26.71 -0.10 1.35 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 O -0.55 -8.35 11.97 -35.23 -0.42 -8.77 16 28 C -0.09 -1.49 4.37 -26.71 -0.12 -1.61 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.03 0.78 8.02 -51.93 -0.42 0.36 16 31 H 0.04 1.06 4.84 -51.93 -0.25 0.81 16 32 H 0.09 1.52 8.03 -51.93 -0.42 1.10 16 33 H 0.09 1.53 7.31 -51.93 -0.38 1.15 16 34 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 37 H 0.16 2.70 7.87 -52.49 -0.41 2.28 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.37 6.13 -51.93 -0.32 1.05 16 40 H 0.08 1.22 7.68 -51.93 -0.40 0.82 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.37 3.85 9.08 45.56 0.41 4.26 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -29.98 371.29 -8.93 -38.90 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.27 Total: 10.71 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -3.06 Total: -5.51 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.17 Total: -44.05 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.34 Total: -21.22 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.98 -8.93 -38.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439469303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.849 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds