Wall clock time and date at job start Tue Mar 31 2020 11:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48491 * 109.47284 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47125 * 119.99735 * 3 2 1 6 6 H 1.48498 * 109.47089 * 239.99513 * 3 2 1 7 7 C 1.37878 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00241 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47106 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00176 * 92.92054 * 10 9 7 12 12 C 1.50699 * 109.46942 * 89.99880 * 11 10 9 13 13 C 1.38680 * 120.41905 * 269.72317 * 12 11 10 14 14 C 1.38629 * 118.42083 * 179.78274 * 13 12 11 15 15 C 1.38230 * 119.15921 * 0.47357 * 14 13 12 16 16 N 1.31849 * 120.76635 * 359.76561 * 15 14 13 17 17 C 1.31886 * 121.72449 * 0.02562 * 16 15 14 18 18 C 1.34785 * 120.00058 * 272.91877 * 10 9 7 19 19 O 1.21276 * 119.99793 * 185.52728 * 18 10 9 20 20 C 1.50698 * 119.99773 * 5.53517 * 18 10 9 21 21 H 1.09008 * 109.47367 * 337.52700 * 20 18 10 22 22 C 1.52995 * 109.47525 * 97.53254 * 20 18 10 23 23 C 1.52999 * 109.47407 * 180.02562 * 22 20 18 24 24 C 1.53006 * 109.46848 * 299.99687 * 23 22 20 25 25 C 1.52995 * 109.46861 * 59.99979 * 24 23 22 26 26 H 1.08994 * 109.47392 * 60.00508 * 25 24 23 27 27 O 1.42901 * 109.47015 * 180.02562 * 25 24 23 28 28 C 1.52999 * 109.46724 * 217.53499 * 20 18 10 29 29 H 0.97000 * 120.00025 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47023 * 300.00303 * 9 7 2 31 31 H 1.08996 * 109.46521 * 60.00033 * 9 7 2 32 32 H 1.08993 * 109.47261 * 209.99533 * 11 10 9 33 33 H 1.09004 * 109.47111 * 329.99977 * 11 10 9 34 34 H 1.07996 * 120.79100 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.41647 * 180.21989 * 14 13 12 36 36 H 1.07999 * 119.61562 * 179.75165 * 15 14 13 37 37 H 1.08003 * 119.61881 * 179.97438 * 17 16 15 38 38 H 1.09009 * 109.46993 * 299.99950 * 22 20 18 39 39 H 1.09000 * 109.46959 * 59.99416 * 22 20 18 40 40 H 1.08994 * 109.47521 * 59.99250 * 23 22 20 41 41 H 1.08997 * 109.46857 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.47191 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.46964 * 300.00435 * 24 23 22 44 44 H 0.96702 * 114.00213 * 300.00004 * 27 25 24 45 45 H 1.09000 * 109.47145 * 299.99615 * 28 20 18 46 46 H 1.08989 * 109.47568 * 59.99917 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6298 -4.2115 1.2676 12 6 1.6976 -5.3389 1.6296 13 6 0.5702 -5.0977 2.4003 14 6 -0.2612 -6.1644 2.7050 15 6 0.0641 -7.4256 2.2421 16 7 1.1473 -7.6187 1.5156 17 6 1.9587 -6.6270 1.2031 18 6 2.6861 -4.0863 -1.1652 19 8 3.3947 -5.0705 -1.1728 20 6 2.3458 -3.3928 -2.4591 21 1 1.4295 -2.8161 -2.3323 22 6 3.4889 -2.4544 -2.8509 23 6 3.1431 -1.7498 -4.1642 24 6 2.9401 -2.7933 -5.2647 25 6 1.7970 -3.7318 -4.8729 26 1 0.8809 -3.1551 -4.7457 27 8 1.6078 -4.7067 -5.9004 28 6 2.1431 -4.4367 -3.5592 29 1 -0.4850 0.8400 -0.0004 30 1 0.6239 -2.5567 0.8903 31 1 0.6247 -2.5570 -0.8897 32 1 3.6437 -4.5977 1.1636 33 1 2.6077 -3.4554 2.0525 34 1 0.3432 -4.1020 2.7515 35 1 -1.1497 -6.0125 3.2999 36 1 -0.5762 -8.2625 2.4785 37 1 2.8370 -6.8239 0.6062 38 1 3.6332 -1.7107 -2.0671 39 1 4.4051 -3.0311 -2.9777 40 1 2.2270 -1.1732 -4.0370 41 1 3.9577 -1.0816 -4.4434 42 1 2.6942 -2.2914 -6.2004 43 1 3.8562 -3.3701 -5.3919 44 1 1.3855 -4.3309 -6.7632 45 1 3.0593 -5.0134 -3.6861 46 1 1.3288 -5.1052 -3.2802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439469305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:57 Heat of formation + Delta-G solvation = -71.907073 kcal Electronic energy + Delta-G solvation = -27771.886740 eV Core-core repulsion = 24046.422985 eV Total energy + Delta-G solvation = -3725.463756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16843 -39.50542 -37.94609 -35.37361 -35.12039 -33.08413 -32.11439 -31.46514 -30.54013 -29.19449 -27.57362 -26.10154 -23.52267 -23.24592 -22.77978 -22.04828 -21.62802 -19.74898 -18.40584 -17.03411 -16.93151 -16.57449 -16.38955 -15.77878 -15.58298 -15.08289 -14.96615 -14.50524 -14.25094 -14.07440 -13.54177 -13.50233 -13.36449 -12.84301 -12.79224 -12.65376 -12.47563 -12.23040 -11.92882 -11.86646 -11.56873 -11.37878 -11.25008 -10.99132 -10.94863 -10.70375 -10.58109 -10.20810 -10.19348 -10.05236 -9.86464 -9.62349 -9.54939 -9.23268 -9.05939 -8.72086 -8.55392 -7.83616 -6.26435 -4.33962 1.33124 1.53932 3.17138 3.23374 3.24368 3.32823 3.73855 4.16056 4.24745 4.45515 4.69627 4.92015 4.95078 5.04484 5.06977 5.18804 5.23255 5.26636 5.33182 5.41954 5.47565 5.57646 5.67100 5.71121 5.74887 5.82436 5.90973 5.99314 6.10225 6.14059 6.19435 6.28606 6.31914 6.35103 6.47361 6.47952 6.58519 6.63259 6.74288 6.77617 6.96921 7.12644 7.42854 7.67987 7.74738 7.96275 8.20987 8.23631 8.70950 8.94907 9.33969 10.80139 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008466 B = 0.005944 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.533057 B = 4709.307633 C = 7165.836343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.068 3.932 3 Si 0.893 3.107 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.062 0.938 9 C 0.239 3.761 10 N -0.591 5.591 11 C 0.161 3.839 12 C -0.145 4.145 13 C -0.060 4.060 14 C -0.179 4.179 15 C 0.088 3.912 16 N -0.492 5.492 17 C 0.118 3.882 18 C 0.526 3.474 19 O -0.569 6.569 20 C -0.098 4.098 21 H 0.105 0.895 22 C -0.104 4.104 23 C -0.113 4.113 24 C -0.149 4.149 25 C 0.106 3.894 26 H 0.056 0.944 27 O -0.570 6.570 28 C -0.094 4.094 29 H 0.266 0.734 30 H 0.035 0.965 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.131 0.869 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.373 0.627 45 H 0.077 0.923 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -4.929 -2.639 5.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.081 0.919 9 C 0.119 3.881 10 N -0.321 5.321 11 C 0.037 3.963 12 C -0.148 4.148 13 C -0.086 4.086 14 C -0.199 4.199 15 C -0.069 4.069 16 N -0.201 5.201 17 C -0.039 4.039 18 C 0.315 3.685 19 O -0.450 6.450 20 C -0.119 4.119 21 H 0.123 0.877 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.187 4.187 25 C 0.047 3.953 26 H 0.074 0.926 27 O -0.375 6.375 28 C -0.132 4.132 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.107 0.893 34 H 0.154 0.846 35 H 0.149 0.851 36 H 0.167 0.833 37 H 0.176 0.824 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.219 0.781 45 H 0.095 0.905 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.418 -6.538 -2.421 7.114 hybrid contribution -0.174 2.458 -0.053 2.464 sum 1.244 -4.080 -2.474 4.931 Atomic orbital electron populations 1.69907 1.05993 1.27451 1.49451 1.24908 0.94785 0.99145 0.94715 0.86635 0.79641 0.82793 0.78929 1.21203 1.20152 1.19928 1.21421 0.93511 0.90249 1.52241 0.91940 1.19460 0.87511 0.82597 0.98503 1.48268 1.45381 1.34534 1.03910 1.20131 0.96156 0.92564 0.87441 1.21443 0.97934 0.96965 0.98507 1.21625 0.92709 0.99553 0.94757 1.22092 1.01047 0.94124 1.02640 1.22698 0.93963 0.96263 0.93988 1.67713 1.04392 1.35592 1.12384 1.22868 0.97848 0.87965 0.95222 1.20416 0.79225 0.83338 0.85554 1.90565 1.39837 1.27003 1.87578 1.21179 1.02197 0.96793 0.91691 0.87704 1.21424 0.96501 0.98364 0.97853 1.21440 1.02206 0.97209 0.94229 1.22271 0.99839 0.97893 0.98683 1.21834 0.96656 0.88838 0.87964 0.92556 1.86523 1.93238 1.36368 1.21334 1.21299 1.02934 0.97363 0.91564 0.92432 0.94676 0.94457 0.89853 0.89289 0.84605 0.85130 0.83336 0.82351 0.89564 0.92246 0.91200 0.91782 0.92212 0.91338 0.78099 0.90471 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.08 13.29 55.43 0.74 -22.34 16 2 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 19.33 29.54 -169.99 -5.02 14.31 16 4 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.54 -12.68 8.51 -34.44 -0.29 -12.97 16 8 H 0.06 1.50 7.28 -52.48 -0.38 1.11 16 9 C 0.24 5.26 4.83 -5.19 -0.03 5.23 16 10 N -0.59 -11.66 2.44 -176.44 -0.43 -12.10 16 11 C 0.16 2.81 5.51 -5.20 -0.03 2.78 16 12 C -0.15 -2.42 5.48 -104.48 -0.57 -2.99 16 13 C -0.06 -0.91 9.86 -39.27 -0.39 -1.30 16 14 C -0.18 -2.40 10.11 -39.44 -0.40 -2.80 16 15 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 16 N -0.49 -8.27 10.36 -13.25 -0.14 -8.41 16 17 C 0.12 2.03 10.74 -17.55 -0.19 1.84 16 18 C 0.53 10.49 6.60 -10.98 -0.07 10.42 16 19 O -0.57 -12.14 15.19 5.56 0.08 -12.06 16 20 C -0.10 -1.76 2.03 -91.78 -0.19 -1.94 16 21 H 0.10 2.03 5.64 -51.92 -0.29 1.74 16 22 C -0.10 -1.74 5.18 -26.73 -0.14 -1.88 16 23 C -0.11 -1.62 5.92 -26.73 -0.16 -1.77 16 24 C -0.15 -1.91 5.55 -26.73 -0.15 -2.06 16 25 C 0.11 1.51 3.47 -26.70 -0.09 1.41 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 O -0.57 -7.78 13.32 -35.23 -0.47 -8.25 16 28 C -0.09 -1.58 4.55 -26.70 -0.12 -1.70 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.04 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.04 0.88 6.06 -51.93 -0.31 0.56 16 32 H 0.08 1.43 7.46 -51.93 -0.39 1.04 16 33 H 0.09 1.48 8.02 -51.93 -0.42 1.07 16 34 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 37 H 0.16 2.80 7.40 -52.48 -0.39 2.41 16 38 H 0.09 1.61 6.80 -51.92 -0.35 1.25 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.37 3.30 9.08 45.56 0.41 3.71 16 45 H 0.08 1.38 7.86 -51.93 -0.41 0.98 16 46 H 0.06 1.14 8.14 -51.94 -0.42 0.72 16 LS Contribution 373.57 15.07 5.63 5.63 Total: -1.00 -28.57 373.57 -9.02 -37.60 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.31 Total: 10.73 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.11 Total: -5.11 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.17 Total: -42.84 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.38 Total: -20.31 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.57 -9.02 -37.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439469305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.311 kcal (2) G-P(sol) polarization free energy of solvation -28.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds