Wall clock time and date at job start Tue Mar 31 2020 11:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00104 * 2 1 4 4 H 1.48491 * 109.47284 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47125 * 119.99735 * 3 2 1 6 6 H 1.48498 * 109.47089 * 239.99513 * 3 2 1 7 7 C 1.37878 * 119.99744 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00070 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00241 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47106 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00176 * 92.92054 * 10 9 7 12 12 C 1.50699 * 109.46942 * 89.99880 * 11 10 9 13 13 C 1.38680 * 120.41905 * 269.72317 * 12 11 10 14 14 C 1.38629 * 118.42083 * 179.78274 * 13 12 11 15 15 C 1.38230 * 119.15921 * 0.47357 * 14 13 12 16 16 N 1.31849 * 120.76635 * 359.76561 * 15 14 13 17 17 C 1.31886 * 121.72449 * 0.02562 * 16 15 14 18 18 C 1.34785 * 120.00058 * 272.91877 * 10 9 7 19 19 O 1.21276 * 119.99793 * 185.52728 * 18 10 9 20 20 C 1.50698 * 119.99773 * 5.53517 * 18 10 9 21 21 H 1.09008 * 109.47367 * 337.52700 * 20 18 10 22 22 C 1.52995 * 109.47525 * 97.53254 * 20 18 10 23 23 C 1.52999 * 109.47407 * 180.02562 * 22 20 18 24 24 C 1.53006 * 109.46848 * 299.99687 * 23 22 20 25 25 C 1.52995 * 109.46861 * 59.99979 * 24 23 22 26 26 H 1.08994 * 109.47392 * 60.00508 * 25 24 23 27 27 O 1.42901 * 109.47015 * 180.02562 * 25 24 23 28 28 C 1.52999 * 109.46724 * 217.53499 * 20 18 10 29 29 H 0.97000 * 120.00025 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47023 * 300.00303 * 9 7 2 31 31 H 1.08996 * 109.46521 * 60.00033 * 9 7 2 32 32 H 1.08993 * 109.47261 * 209.99533 * 11 10 9 33 33 H 1.09004 * 109.47111 * 329.99977 * 11 10 9 34 34 H 1.07996 * 120.79100 * 0.02562 * 13 12 11 35 35 H 1.07997 * 120.41647 * 180.21989 * 14 13 12 36 36 H 1.07999 * 119.61562 * 179.75165 * 15 14 13 37 37 H 1.08003 * 119.61881 * 179.97438 * 17 16 15 38 38 H 1.09009 * 109.46993 * 299.99950 * 22 20 18 39 39 H 1.09000 * 109.46959 * 59.99416 * 22 20 18 40 40 H 1.08994 * 109.47521 * 59.99250 * 23 22 20 41 41 H 1.08997 * 109.46857 * 180.02562 * 23 22 20 42 42 H 1.08999 * 109.47191 * 180.02562 * 24 23 22 43 43 H 1.09000 * 109.46964 * 300.00435 * 24 23 22 44 44 H 0.96702 * 114.00213 * 300.00004 * 27 25 24 45 45 H 1.09000 * 109.47145 * 299.99615 * 28 20 18 46 46 H 1.08989 * 109.47568 * 59.99917 * 28 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1030 1.6963 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6298 -4.2115 1.2676 12 6 1.6976 -5.3389 1.6296 13 6 0.5702 -5.0977 2.4003 14 6 -0.2612 -6.1644 2.7050 15 6 0.0641 -7.4256 2.2421 16 7 1.1473 -7.6187 1.5156 17 6 1.9587 -6.6270 1.2031 18 6 2.6861 -4.0863 -1.1652 19 8 3.3947 -5.0705 -1.1728 20 6 2.3458 -3.3928 -2.4591 21 1 1.4295 -2.8161 -2.3323 22 6 3.4889 -2.4544 -2.8509 23 6 3.1431 -1.7498 -4.1642 24 6 2.9401 -2.7933 -5.2647 25 6 1.7970 -3.7318 -4.8729 26 1 0.8809 -3.1551 -4.7457 27 8 1.6078 -4.7067 -5.9004 28 6 2.1431 -4.4367 -3.5592 29 1 -0.4850 0.8400 -0.0004 30 1 0.6239 -2.5567 0.8903 31 1 0.6247 -2.5570 -0.8897 32 1 3.6437 -4.5977 1.1636 33 1 2.6077 -3.4554 2.0525 34 1 0.3432 -4.1020 2.7515 35 1 -1.1497 -6.0125 3.2999 36 1 -0.5762 -8.2625 2.4785 37 1 2.8370 -6.8239 0.6062 38 1 3.6332 -1.7107 -2.0671 39 1 4.4051 -3.0311 -2.9777 40 1 2.2270 -1.1732 -4.0370 41 1 3.9577 -1.0816 -4.4434 42 1 2.6942 -2.2914 -6.2004 43 1 3.8562 -3.3701 -5.3919 44 1 1.3855 -4.3309 -6.7632 45 1 3.0593 -5.0134 -3.6861 46 1 1.3288 -5.1052 -3.2802 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439469305.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:56 Heat of formation + Delta-G solvation = -88.960059 kcal Electronic energy + Delta-G solvation = -27772.626213 eV Core-core repulsion = 24046.422985 eV Total energy + Delta-G solvation = -3726.203229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57311 -40.82017 -39.23765 -36.92565 -36.41334 -34.78260 -33.55678 -32.73190 -31.82721 -30.44387 -29.30508 -27.55585 -25.12575 -24.50694 -24.26487 -23.30402 -22.88615 -21.01052 -19.91571 -18.62426 -18.28290 -18.01523 -17.79680 -17.13001 -17.00894 -16.50074 -16.38341 -16.08831 -15.43508 -15.42231 -14.92553 -14.72878 -14.63437 -14.27072 -14.14683 -14.09123 -13.96277 -13.54134 -13.45978 -13.25174 -13.12538 -12.88993 -12.66134 -12.57448 -12.42725 -12.19019 -11.91080 -11.79144 -11.61006 -11.48222 -11.41801 -10.88547 -10.74720 -10.59289 -10.50912 -10.40443 -9.94325 -9.49274 -8.16073 -6.28951 0.11861 0.32127 1.45394 1.47562 1.53417 1.72473 2.25792 2.46093 2.92377 3.15360 3.27861 3.52587 3.61831 3.71914 3.87186 3.89346 4.03021 4.06832 4.09874 4.17836 4.18123 4.35594 4.40797 4.44900 4.50331 4.57097 4.65277 4.67223 4.74981 4.85872 4.87179 4.97204 5.09059 5.13105 5.15120 5.18824 5.23509 5.29316 5.34159 5.35880 5.48922 5.68708 5.77559 5.82961 6.08771 6.54320 6.83794 6.92315 7.00047 7.30450 7.44025 8.89593 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008466 B = 0.005944 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3306.533057 B = 4709.307633 C = 7165.836343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.287 1.287 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.058 0.942 9 C 0.256 3.744 10 N -0.592 5.592 11 C 0.161 3.839 12 C -0.156 4.156 13 C -0.069 4.069 14 C -0.167 4.167 15 C 0.087 3.913 16 N -0.514 5.514 17 C 0.103 3.897 18 C 0.519 3.481 19 O -0.586 6.586 20 C -0.092 4.092 21 H 0.089 0.911 22 C -0.100 4.100 23 C -0.110 4.110 24 C -0.140 4.140 25 C 0.111 3.889 26 H 0.059 0.941 27 O -0.582 6.582 28 C -0.089 4.089 29 H 0.266 0.734 30 H 0.024 0.976 31 H 0.022 0.978 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.168 0.832 36 H 0.186 0.814 37 H 0.143 0.857 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.396 0.604 45 H 0.064 0.936 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -4.483 -3.136 5.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.172 4.172 3 Si 0.772 3.228 4 H -0.212 1.212 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.076 0.924 9 C 0.135 3.865 10 N -0.322 5.322 11 C 0.038 3.962 12 C -0.160 4.160 13 C -0.095 4.095 14 C -0.187 4.187 15 C -0.070 4.070 16 N -0.223 5.223 17 C -0.053 4.053 18 C 0.308 3.692 19 O -0.468 6.468 20 C -0.113 4.113 21 H 0.108 0.892 22 C -0.138 4.138 23 C -0.147 4.147 24 C -0.177 4.177 25 C 0.052 3.948 26 H 0.077 0.923 27 O -0.391 6.391 28 C -0.127 4.127 29 H 0.075 0.925 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.159 0.841 35 H 0.186 0.814 36 H 0.203 0.797 37 H 0.161 0.839 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.246 0.754 45 H 0.083 0.917 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.992 -6.093 -2.932 6.834 hybrid contribution -0.090 2.218 0.157 2.226 sum 0.902 -3.874 -2.775 4.850 Atomic orbital electron populations 1.70000 1.07166 1.28050 1.50600 1.25515 0.95348 1.01807 0.94509 0.85781 0.78533 0.79424 0.79051 1.21249 1.20067 1.19133 1.21548 0.93281 0.90949 1.51465 0.92416 1.19107 0.87389 0.82846 0.97111 1.48256 1.44930 1.34094 1.04874 1.20190 0.96403 0.93043 0.86574 1.21303 0.98670 0.96277 0.99713 1.21816 0.92524 1.00604 0.94575 1.22478 1.01417 0.93081 1.01680 1.23352 0.93208 0.97852 0.92564 1.67706 1.05473 1.35636 1.13474 1.22669 0.98089 0.88521 0.96042 1.20822 0.78918 0.83184 0.86243 1.90550 1.40693 1.27710 1.87874 1.21131 1.01918 0.96991 0.91246 0.89244 1.21385 0.95953 0.97595 0.98835 1.21425 1.02506 0.97594 0.93185 1.22200 0.99089 0.97123 0.99322 1.21680 0.97458 0.88691 0.86941 0.92303 1.86470 1.93369 1.36712 1.22558 1.21217 1.01644 0.96828 0.93004 0.92479 0.95774 0.96000 0.90113 0.88771 0.84066 0.81444 0.79709 0.83929 0.91695 0.92209 0.91913 0.89904 0.89026 0.91359 0.75445 0.91725 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.82 13.29 21.45 0.28 -47.54 16 2 C 0.03 1.41 5.46 84.65 0.46 1.87 16 3 Si 0.95 39.24 29.54 68.60 2.03 41.27 16 4 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 7 C -0.53 -25.55 8.51 25.60 0.22 -25.34 16 8 H 0.06 2.79 7.28 -2.91 -0.02 2.77 16 9 C 0.26 11.56 4.83 85.63 0.41 11.97 16 10 N -0.59 -24.17 2.44 -830.52 -2.03 -26.20 16 11 C 0.16 5.81 5.51 85.63 0.47 6.28 16 12 C -0.16 -5.30 5.48 -19.77 -0.11 -5.41 16 13 C -0.07 -2.03 9.86 22.47 0.22 -1.81 16 14 C -0.17 -4.09 10.11 22.36 0.23 -3.87 16 15 C 0.09 2.27 11.18 84.69 0.95 3.22 16 16 N -0.51 -17.09 10.36 -195.84 -2.03 -19.11 16 17 C 0.10 3.65 10.74 84.67 0.91 4.56 16 18 C 0.52 21.47 6.60 87.66 0.58 22.05 16 19 O -0.59 -26.01 15.19 -3.02 -0.05 -26.05 16 20 C -0.09 -3.40 2.03 -11.54 -0.02 -3.42 16 21 H 0.09 3.60 5.64 -2.38 -0.01 3.58 16 22 C -0.10 -3.36 5.18 30.59 0.16 -3.20 16 23 C -0.11 -2.96 5.92 30.60 0.18 -2.78 16 24 C -0.14 -3.25 5.55 30.59 0.17 -3.08 16 25 C 0.11 3.04 3.47 30.61 0.11 3.14 16 26 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 27 O -0.58 -14.88 13.32 -148.98 -1.98 -16.86 16 28 C -0.09 -3.05 4.55 30.61 0.14 -2.91 16 29 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 30 H 0.02 1.14 8.05 -2.39 -0.02 1.12 16 31 H 0.02 1.07 6.06 -2.39 -0.01 1.05 16 32 H 0.08 2.91 7.46 -2.39 -0.02 2.89 16 33 H 0.09 3.22 8.02 -2.38 -0.02 3.20 16 34 H 0.14 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.14 5.37 7.40 -2.91 -0.02 5.34 16 38 H 0.06 2.45 6.80 -2.38 -0.02 2.43 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 42 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.40 5.92 9.08 -74.06 -0.67 5.25 16 45 H 0.06 2.36 7.86 -2.39 -0.02 2.34 16 46 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -61.75 373.57 1.60 -60.15 By element: Atomic # 1 Polarization: 32.75 SS G_CDS: 0.31 Total: 33.06 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.07 Total: 1.30 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -3.77 Total: -92.86 kcal Atomic # 8 Polarization: -40.89 SS G_CDS: -2.03 Total: -42.92 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -61.75 1.60 -60.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439469305.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.811 kcal (2) G-P(sol) polarization free energy of solvation -61.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds