Wall clock time and date at job start Tue Mar 31 2020 12:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00199 * 2 1 4 4 H 1.48503 * 109.47560 * 240.00350 * 3 2 1 5 5 H 1.48498 * 109.46806 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47309 * 119.99745 * 3 2 1 7 7 C 1.37876 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00062 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99892 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47041 * 179.97438 * 9 7 2 11 11 C 1.46492 * 119.99996 * 264.55367 * 10 9 7 12 12 C 1.50701 * 109.47077 * 270.00366 * 11 10 9 13 13 C 1.38226 * 119.61970 * 94.99941 * 12 11 10 14 14 C 1.38635 * 119.15960 * 179.97438 * 13 12 11 15 15 C 1.38677 * 118.42048 * 359.97438 * 14 13 12 16 16 C 1.38179 * 119.16310 * 0.02562 * 15 14 13 17 17 N 1.31862 * 119.61593 * 274.72476 * 12 11 10 18 18 C 1.34782 * 119.99848 * 84.55357 * 10 9 7 19 19 O 1.21279 * 119.99491 * 185.39225 * 18 10 9 20 20 C 1.50700 * 120.00064 * 5.11991 * 18 10 9 21 21 H 1.09000 * 109.47141 * 330.72591 * 20 18 10 22 22 C 1.52997 * 109.46847 * 210.72014 * 20 18 10 23 23 C 1.53006 * 109.46917 * 179.97438 * 22 20 18 24 24 C 1.53005 * 109.46819 * 60.00205 * 23 22 20 25 25 C 1.52990 * 109.47227 * 299.99912 * 24 23 22 26 26 H 1.09000 * 109.47470 * 299.99879 * 25 24 23 27 27 O 1.42908 * 109.47165 * 179.97438 * 25 24 23 28 28 C 1.53002 * 109.47462 * 60.00126 * 25 24 23 29 29 H 0.96999 * 119.99942 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47183 * 59.99784 * 9 7 2 31 31 H 1.09001 * 109.46793 * 299.99493 * 9 7 2 32 32 H 1.09002 * 109.47344 * 30.00060 * 11 10 9 33 33 H 1.09000 * 109.47506 * 150.00113 * 11 10 9 34 34 H 1.07999 * 120.41929 * 359.95782 * 13 12 11 35 35 H 1.08003 * 120.78662 * 180.02562 * 14 13 12 36 36 H 1.07994 * 120.41449 * 179.97438 * 15 14 13 37 37 H 1.07994 * 119.61713 * 179.97438 * 16 15 14 38 38 H 1.08991 * 109.47508 * 300.00036 * 22 20 18 39 39 H 1.08998 * 109.46817 * 60.00517 * 22 20 18 40 40 H 1.08998 * 109.47263 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.47270 * 300.00698 * 23 22 20 42 42 H 1.09005 * 109.47193 * 59.99980 * 24 23 22 43 43 H 1.09001 * 109.46788 * 179.97438 * 24 23 22 44 44 H 0.96693 * 113.99936 * 60.00310 * 27 25 24 45 45 H 1.09003 * 109.47562 * 180.02562 * 28 25 24 46 46 H 1.09000 * 109.46980 * 59.99453 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 2.5876 -4.2465 -1.2662 12 6 1.6443 -5.3831 -1.5655 13 6 0.5522 -5.1668 -2.3847 14 6 -0.3090 -6.2193 -2.6541 15 6 -0.0381 -7.4556 -2.0873 16 6 1.0731 -7.5963 -1.2781 17 7 1.8734 -6.5737 -1.0471 18 6 2.7252 -4.0539 1.1589 19 8 3.5856 -4.9086 1.1510 20 6 2.2443 -3.4808 2.4671 21 1 1.9173 -2.4522 2.3148 22 6 3.3855 -3.5078 3.4858 23 6 2.8974 -2.9253 4.8138 24 6 1.7267 -3.7599 5.3372 25 6 0.5856 -3.7330 4.3184 26 1 0.2589 -2.7044 4.1658 27 8 -0.5076 -4.5130 4.8070 28 6 1.0736 -4.3154 2.9904 29 1 -0.4850 0.8400 0.0004 30 1 0.6247 -2.5563 -0.8919 31 1 0.6241 -2.5575 0.8881 32 1 2.5388 -3.5125 -2.0706 33 1 3.6047 -4.6301 -1.1856 34 1 0.3720 -4.1903 -2.8094 35 1 -1.1701 -6.0798 -3.2910 36 1 -0.6878 -8.2974 -2.2753 37 1 1.2909 -8.5556 -0.8325 38 1 3.7124 -4.5363 3.6381 39 1 4.2193 -2.9128 3.1132 40 1 3.7102 -2.9449 5.5398 41 1 2.5707 -1.8967 4.6612 42 1 2.0533 -4.7886 5.4897 43 1 1.3793 -3.3452 6.2834 44 1 -0.8686 -4.2009 5.6479 45 1 0.2607 -4.2958 2.2644 46 1 1.4003 -5.3440 3.1430 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439536403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:31 Heat of formation + Delta-G solvation = -89.958704 kcal Electronic energy + Delta-G solvation = -27852.652404 eV Core-core repulsion = 24126.405871 eV Total energy + Delta-G solvation = -3726.246533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.54116 -40.80922 -39.22410 -36.88631 -36.36203 -34.70970 -33.42325 -32.96198 -31.82101 -30.46478 -29.41214 -27.69408 -25.17632 -24.48720 -24.17049 -23.38731 -22.81932 -21.02941 -19.94044 -18.70315 -18.28409 -17.87388 -17.52999 -17.23675 -16.92151 -16.53215 -16.41583 -16.09735 -15.76289 -15.47162 -14.84940 -14.77747 -14.58668 -14.22092 -14.14765 -14.12926 -13.89045 -13.54196 -13.42987 -13.27350 -13.06325 -12.76109 -12.67102 -12.53676 -12.43603 -12.27384 -12.00981 -11.76826 -11.71321 -11.53977 -11.45684 -10.82011 -10.77083 -10.65617 -10.48436 -10.36343 -9.93853 -9.47501 -8.19379 -6.34531 0.12740 0.39695 1.43792 1.44659 1.52215 1.75686 2.25311 2.44702 2.97381 3.10503 3.25363 3.39373 3.60440 3.67110 3.82413 4.00056 4.01942 4.08259 4.16586 4.20263 4.25539 4.30649 4.38652 4.47989 4.48669 4.55255 4.59433 4.65745 4.77423 4.84212 4.87243 4.94191 5.05702 5.10962 5.14135 5.17268 5.20770 5.23196 5.26863 5.29136 5.47338 5.65224 5.80175 5.83464 6.06169 6.54670 6.80928 6.91035 7.12786 7.31585 7.43054 8.85869 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.006205 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.086323 B = 4511.239791 C = 6621.713969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.028 3.972 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.052 0.948 9 C 0.259 3.741 10 N -0.595 5.595 11 C 0.165 3.835 12 C 0.094 3.906 13 C -0.166 4.166 14 C -0.077 4.077 15 C -0.165 4.165 16 C 0.077 3.923 17 N -0.501 5.501 18 C 0.521 3.479 19 O -0.579 6.579 20 C -0.099 4.099 21 H 0.095 0.905 22 C -0.097 4.097 23 C -0.111 4.111 24 C -0.140 4.140 25 C 0.112 3.888 26 H 0.057 0.943 27 O -0.583 6.583 28 C -0.085 4.085 29 H 0.268 0.732 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.139 0.861 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.172 0.828 38 H 0.062 0.938 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.396 0.604 45 H 0.044 0.956 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.269 -8.352 3.711 9.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.173 4.173 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.139 3.861 10 N -0.325 5.325 11 C 0.041 3.959 12 C -0.044 4.044 13 C -0.187 4.187 14 C -0.103 4.103 15 C -0.184 4.184 16 C -0.080 4.080 17 N -0.211 5.211 18 C 0.310 3.690 19 O -0.459 6.459 20 C -0.120 4.120 21 H 0.113 0.887 22 C -0.135 4.135 23 C -0.148 4.148 24 C -0.177 4.177 25 C 0.053 3.947 26 H 0.075 0.925 27 O -0.391 6.391 28 C -0.123 4.123 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.117 0.883 33 H 0.093 0.907 34 H 0.156 0.844 35 H 0.184 0.816 36 H 0.189 0.811 37 H 0.189 0.811 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.246 0.754 45 H 0.063 0.937 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.137 -9.092 3.678 9.874 hybrid contribution -0.479 1.447 -0.482 1.599 sum -1.617 -7.645 3.196 8.442 Atomic orbital electron populations 1.70006 1.07134 1.28255 1.50072 1.25583 0.95502 1.02018 0.94202 0.85682 0.78491 0.79022 0.78968 1.19872 1.20599 1.19530 1.21607 0.93222 0.91420 1.52326 0.92993 1.19054 0.87347 0.82572 0.97176 1.48165 1.45257 1.33833 1.05258 1.20145 0.96847 0.91695 0.87227 1.21637 0.95774 0.92809 0.94172 1.22206 0.95405 1.01409 0.99663 1.21989 0.98670 0.92061 0.97531 1.22520 0.98657 0.99380 0.97889 1.23267 0.91435 0.97639 0.95674 1.67528 1.31714 1.00363 1.21500 1.20821 0.80879 0.80998 0.86324 1.90572 1.33052 1.34265 1.88035 1.21217 0.97319 1.01310 0.92142 0.88680 1.21366 0.95822 1.01632 0.94689 1.21483 0.98458 0.99328 0.95558 1.22199 0.95327 1.01376 0.98829 1.21652 0.86745 0.93636 0.92625 0.92540 1.86462 1.50387 1.58057 1.44227 1.21138 0.95757 0.98817 0.96579 0.92260 0.95887 0.95959 0.88286 0.90655 0.84352 0.81573 0.81096 0.81076 0.91880 0.92512 0.89104 0.91524 0.91350 0.88682 0.75387 0.93733 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.36 13.29 21.45 0.28 -49.07 16 2 C 0.03 1.44 5.46 84.65 0.46 1.90 16 3 Si 0.95 40.99 29.54 68.60 2.03 43.01 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.55 -28.28 8.72 25.60 0.22 -28.06 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.26 12.58 4.79 85.63 0.41 12.99 16 10 N -0.59 -26.76 2.45 -830.50 -2.04 -28.80 16 11 C 0.16 6.72 5.73 85.63 0.49 7.21 16 12 C 0.09 3.52 6.36 42.55 0.27 3.79 16 13 C -0.17 -5.22 9.72 22.36 0.22 -5.00 16 14 C -0.08 -1.87 10.18 22.47 0.23 -1.64 16 15 C -0.16 -3.74 10.11 22.36 0.23 -3.52 16 16 C 0.08 2.23 11.18 84.67 0.95 3.17 16 17 N -0.50 -18.97 10.27 -183.89 -1.89 -20.86 16 18 C 0.52 23.60 6.67 87.66 0.58 24.19 16 19 O -0.58 -28.45 15.74 -3.03 -0.05 -28.49 16 20 C -0.10 -3.90 1.72 -11.54 -0.02 -3.92 16 21 H 0.10 4.13 5.97 -2.39 -0.01 4.12 16 22 C -0.10 -3.27 4.81 30.60 0.15 -3.12 16 23 C -0.11 -2.83 5.92 30.60 0.18 -2.64 16 24 C -0.14 -3.27 5.54 30.59 0.17 -3.10 16 25 C 0.11 3.30 3.47 30.59 0.11 3.41 16 26 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 27 O -0.58 -16.03 13.32 -148.98 -1.98 -18.02 16 28 C -0.08 -3.14 4.73 30.60 0.14 -2.99 16 29 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 30 H 0.02 1.16 8.03 -2.39 -0.02 1.14 16 31 H 0.02 1.15 6.04 -2.39 -0.01 1.14 16 32 H 0.10 3.75 7.97 -2.39 -0.02 3.73 16 33 H 0.08 3.24 7.35 -2.39 -0.02 3.22 16 34 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.17 2.82 8.06 -2.91 -0.02 2.79 16 36 H 0.17 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.17 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.06 2.19 7.85 -2.39 -0.02 2.18 16 39 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.40 6.59 9.08 -74.06 -0.67 5.92 16 45 H 0.04 1.83 7.66 -2.39 -0.02 1.81 16 46 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -68.79 376.34 1.45 -67.35 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.30 Total: 32.20 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 4.79 Total: 2.67 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -3.64 Total: -98.73 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -2.03 Total: -46.51 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.01 kcal Total: -68.79 1.45 -67.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439536403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.610 kcal (2) G-P(sol) polarization free energy of solvation -68.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds