Wall clock time and date at job start Tue Mar 31 2020 12:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36715 * 126.68511 * 2 1 4 4 C 1.46846 * 125.75820 * 359.96266 * 3 2 1 5 5 O 1.21675 * 119.99785 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99988 * 179.72145 * 4 3 2 7 7 C 1.46500 * 119.99838 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47038 * 180.02562 * 7 6 4 9 9 C 1.53003 * 109.47028 * 299.99867 * 8 7 6 10 10 C 1.52998 * 109.47199 * 59.99946 * 8 7 6 11 11 C 1.50694 * 109.46885 * 179.97438 * 8 7 6 12 12 H 1.08000 * 120.00375 * 1.34826 * 11 8 7 13 13 C 1.37881 * 119.99953 * 181.34614 * 11 8 7 14 14 N 1.31515 * 120.00100 * 193.97792 * 13 11 8 15 15 Si 1.86800 * 119.99948 * 13.97837 * 13 11 8 16 16 H 1.48500 * 109.47307 * 84.54480 * 15 13 11 17 17 H 1.48493 * 109.47344 * 204.55126 * 15 13 11 18 18 H 1.48504 * 109.47035 * 324.54604 * 15 13 11 19 19 N 1.38193 * 108.48255 * 180.22276 * 3 2 1 20 20 H 0.97000 * 125.34108 * 179.69124 * 19 3 2 21 21 C 1.33319 * 109.30929 * 359.54583 * 19 3 2 22 22 C 1.39491 * 107.90590 * 0.50015 * 21 19 3 23 23 C 1.47100 * 121.62597 * 179.51871 * 22 21 19 24 24 O 1.21320 * 122.44421 * 168.57541 * 23 22 21 25 25 C 1.52144 * 115.11625 * 348.60196 * 23 22 21 26 26 C 1.53186 * 108.42195 * 42.71241 * 25 23 22 27 27 C 1.50759 * 129.22138 * 180.31030 * 21 19 3 28 28 H 1.08996 * 109.47326 * 89.97501 * 1 2 3 29 29 H 1.09007 * 109.46854 * 209.96956 * 1 2 3 30 30 H 1.08996 * 109.47059 * 329.96841 * 1 2 3 31 31 H 0.97002 * 120.00105 * 359.97438 * 6 4 3 32 32 H 1.08998 * 109.47399 * 299.99963 * 7 6 4 33 33 H 1.09001 * 109.46909 * 59.99948 * 7 6 4 34 34 H 1.09004 * 109.46879 * 69.36728 * 9 8 7 35 35 H 1.08996 * 109.46856 * 189.36827 * 9 8 7 36 36 H 1.08998 * 109.46803 * 309.36975 * 9 8 7 37 37 H 1.09000 * 109.47111 * 59.99510 * 10 8 7 38 38 H 1.08996 * 109.47355 * 180.02562 * 10 8 7 39 39 H 1.09006 * 109.47187 * 300.00412 * 10 8 7 40 40 H 0.96998 * 119.99641 * 180.02562 * 14 13 11 41 41 H 1.09007 * 109.66924 * 162.44104 * 25 23 22 42 42 H 1.08996 * 109.67582 * 282.93959 * 25 23 22 43 43 H 1.08993 * 109.23393 * 55.34765 * 26 25 23 44 44 H 1.09007 * 109.22762 * 174.76217 * 26 25 23 45 45 H 1.09000 * 109.51547 * 39.83675 * 27 21 19 46 46 H 1.09005 * 109.54638 * 279.72162 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3237 1.0964 0.0000 4 6 1.8808 2.4964 -0.0008 5 8 0.6926 2.7585 -0.0020 6 7 2.7903 3.4910 0.0050 7 6 2.3484 4.8877 0.0048 8 6 3.5698 5.8091 0.0113 9 6 4.4058 5.5389 1.2639 10 6 4.4168 5.5420 -1.2345 11 6 3.1152 7.2458 0.0105 12 1 2.0607 7.4786 0.0277 13 6 4.0454 8.2633 -0.0124 14 7 3.6784 9.4961 0.2617 15 14 5.8270 7.8907 -0.4325 16 1 5.9964 7.8820 -1.9078 17 1 6.7037 8.9323 0.1603 18 1 6.1973 6.5613 0.1161 19 7 3.6365 0.6647 -0.0051 20 1 4.4167 1.2411 -0.0105 21 6 3.6623 -0.6682 0.0017 22 6 2.3435 -1.1227 -0.0001 23 6 2.0223 -2.5582 -0.0044 24 8 0.9008 -2.9749 0.1967 25 6 3.1993 -3.4825 -0.2789 26 6 4.4083 -2.9751 0.5133 27 6 4.8485 -1.5987 0.0062 28 1 -0.3634 0.0004 -1.0276 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3633 0.8897 0.5143 31 1 3.7375 3.2820 0.0100 32 1 1.7532 5.0804 -0.8878 33 1 1.7446 5.0779 0.8921 34 1 4.8713 4.5564 1.1851 35 1 5.1794 6.3012 1.3559 36 1 3.7621 5.5664 2.1432 37 1 3.8212 5.7344 -2.1269 38 1 5.2872 6.1981 -1.2297 39 1 4.7456 4.5027 -1.2344 40 1 4.3329 10.2119 0.2452 41 1 2.9519 -4.4957 0.0381 42 1 3.4294 -3.4772 -1.3443 43 1 4.1414 -2.9009 1.5674 44 1 5.2327 -3.6792 0.4003 45 1 5.6220 -1.1994 0.6622 46 1 5.2423 -1.6925 -1.0059 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457986623.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:01 Heat of formation + Delta-G solvation = -58.793649 kcal Electronic energy + Delta-G solvation = -26958.054289 eV Core-core repulsion = 23233.159174 eV Total energy + Delta-G solvation = -3724.895115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.94727 -40.63362 -39.63173 -38.42301 -36.36480 -35.21208 -33.94154 -33.39256 -30.55397 -29.71564 -28.32412 -28.04178 -27.33983 -26.80279 -24.23260 -23.24551 -22.00779 -21.07786 -20.49462 -19.46193 -19.19628 -18.10796 -17.38905 -16.97108 -16.78350 -16.65648 -16.14546 -15.95130 -15.57064 -15.30905 -15.10988 -14.94745 -14.86576 -14.59235 -14.48044 -14.30707 -14.03277 -13.88334 -13.78012 -13.55942 -13.32930 -13.05398 -12.97014 -12.42080 -12.40608 -12.19608 -11.98384 -11.95486 -11.81626 -11.80461 -11.20961 -11.04686 -10.64273 -10.50065 -10.41344 -10.19121 -10.00367 -9.14859 -8.31522 -6.34205 0.33548 0.42857 1.34086 1.37267 1.50706 1.80950 2.02195 2.13373 2.31211 2.33686 3.04417 3.29419 3.61381 3.78423 3.82159 3.92540 4.03262 4.11152 4.26188 4.28482 4.36447 4.43139 4.51553 4.66507 4.71282 4.73599 4.78434 4.79924 4.80624 4.86140 4.90417 5.00171 5.01357 5.10037 5.11671 5.17198 5.28289 5.34555 5.37099 5.47782 5.52614 5.63404 5.69236 5.77010 6.26500 6.29068 6.53523 6.70848 6.74635 7.14026 7.30763 8.85925 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023693 B = 0.003022 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.488461 B = 9263.542193 C =10195.958543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.028 4.028 3 C -0.089 4.089 4 C 0.581 3.419 5 O -0.572 6.572 6 N -0.707 5.707 7 C 0.158 3.842 8 C 0.029 3.971 9 C -0.141 4.141 10 C -0.147 4.147 11 C -0.521 4.521 12 H 0.025 0.975 13 C 0.014 3.986 14 N -0.948 5.948 15 Si 0.947 3.053 16 H -0.281 1.281 17 H -0.316 1.316 18 H -0.198 1.198 19 N -0.495 5.495 20 H 0.437 0.563 21 C 0.150 3.850 22 C -0.311 4.311 23 C 0.420 3.580 24 O -0.512 6.512 25 C -0.156 4.156 26 C -0.104 4.104 27 C -0.059 4.059 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.406 0.594 32 H 0.045 0.955 33 H 0.042 0.958 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.265 0.735 41 H 0.098 0.902 42 H 0.121 0.879 43 H 0.064 0.936 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.010 -28.645 -1.545 31.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.035 4.035 3 C -0.198 4.198 4 C 0.370 3.630 5 O -0.452 6.452 6 N -0.359 5.359 7 C 0.034 3.966 8 C 0.028 3.972 9 C -0.199 4.199 10 C -0.204 4.204 11 C -0.559 4.559 12 H 0.044 0.956 13 C -0.183 4.183 14 N -0.587 5.587 15 Si 0.776 3.224 16 H -0.208 1.208 17 H -0.246 1.246 18 H -0.122 1.122 19 N -0.090 5.090 20 H 0.278 0.722 21 C 0.022 3.978 22 C -0.318 4.318 23 C 0.302 3.698 24 O -0.391 6.391 25 C -0.193 4.193 26 C -0.142 4.142 27 C -0.096 4.096 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.243 0.757 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.139 0.861 43 H 0.082 0.918 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 10.712 -28.277 -1.414 30.271 hybrid contribution 0.363 1.565 -0.186 1.617 sum 11.075 -26.712 -1.600 28.961 Atomic orbital electron populations 1.20331 0.89913 1.02399 1.02229 1.19629 0.95926 0.91118 0.96855 1.19643 0.84229 0.92369 1.23591 1.17367 0.85632 0.83775 0.76217 1.90794 1.17796 1.83987 1.52603 1.45839 1.09638 1.05907 1.74501 1.21088 0.96997 0.78587 0.99880 1.18647 0.92239 0.92598 0.93743 1.22230 0.99381 1.00525 0.97734 1.22302 0.98951 1.00587 0.98574 1.21032 0.93137 0.90491 1.51277 0.95650 1.25924 1.04090 0.94350 0.93930 1.70123 1.37171 1.02058 1.49317 0.86303 0.78888 0.79049 0.78173 1.20847 1.24563 1.12202 1.41294 1.07121 1.06966 1.53600 0.72165 1.21979 0.97083 0.83127 0.95657 1.20349 0.93181 0.95253 1.23005 1.22718 0.89389 0.88304 0.69413 1.90508 1.27103 1.80982 1.40532 1.22390 0.93440 0.99077 1.04394 1.21513 0.97478 0.95734 0.99438 1.20729 0.91430 0.91460 1.06017 0.91393 0.91327 0.91565 0.75662 0.93703 0.93974 0.91327 0.93381 0.94223 0.93550 0.94420 0.90612 0.92643 0.88337 0.86097 0.91752 0.86070 0.86422 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.85 9.61 71.24 0.68 -2.16 16 2 C -0.03 -0.80 6.20 -19.79 -0.12 -0.92 16 3 C -0.09 -2.31 7.00 40.04 0.28 -2.03 16 4 C 0.58 19.05 7.79 86.50 0.67 19.72 16 5 O -0.57 -23.80 14.72 -4.27 -0.06 -23.86 16 6 N -0.71 -20.87 5.00 -466.92 -2.33 -23.21 16 7 C 0.16 6.16 4.49 86.38 0.39 6.55 16 8 C 0.03 1.17 0.50 -52.93 -0.03 1.14 16 9 C -0.14 -5.00 7.53 71.98 0.54 -4.46 16 10 C -0.15 -5.12 7.52 71.98 0.54 -4.57 16 11 C -0.52 -28.28 8.62 25.60 0.22 -28.06 16 12 H 0.03 1.58 7.99 -2.91 -0.02 1.56 16 13 C 0.01 0.80 5.32 84.66 0.45 1.25 16 14 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 15 Si 0.95 40.99 22.79 68.60 1.56 42.55 16 16 H -0.28 -11.93 7.10 99.48 0.71 -11.22 16 17 H -0.32 -14.24 7.11 99.48 0.71 -13.53 16 18 H -0.20 -6.96 4.65 99.48 0.46 -6.50 16 19 N -0.49 -7.45 5.88 -170.68 -1.00 -8.45 16 20 H 0.44 3.40 8.13 -92.71 -0.75 2.65 16 21 C 0.15 1.98 7.19 42.65 0.31 2.28 16 22 C -0.31 -6.85 6.08 -20.22 -0.12 -6.97 16 23 C 0.42 8.90 7.09 28.48 0.20 9.10 16 24 O -0.51 -15.29 16.77 -3.15 -0.05 -15.35 16 25 C -0.16 -1.40 6.15 30.37 0.19 -1.21 16 26 C -0.10 -0.33 5.80 30.70 0.18 -0.15 16 27 C -0.06 -0.14 6.24 29.91 0.19 0.05 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 2.11 7.11 -2.38 -0.02 2.10 16 30 H 0.07 2.28 6.44 -2.39 -0.02 2.26 16 31 H 0.41 8.72 5.33 -92.71 -0.49 8.23 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.07 1.74 7.13 -2.38 -0.02 1.72 16 35 H 0.05 1.80 4.30 -2.39 -0.01 1.79 16 36 H 0.04 1.46 8.12 -2.39 -0.02 1.44 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.04 1.36 2.25 -2.39 -0.01 1.36 16 39 H 0.08 1.87 6.86 -2.38 -0.02 1.85 16 40 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 41 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 44 H 0.12 -0.33 8.14 -2.38 -0.02 -0.35 16 45 H 0.12 -0.24 8.14 -2.39 -0.02 -0.26 16 46 H 0.12 -0.23 8.14 -2.38 -0.02 -0.25 16 Total: -1.00 -82.74 354.50 2.52 -80.23 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -0.46 Total: 16.54 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: 4.57 Total: -10.46 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -3.04 Total: -89.65 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.12 Total: -39.21 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.56 Total: 42.55 kcal Total: -82.74 2.52 -80.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457986623.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.433 kcal (2) G-P(sol) polarization free energy of solvation -82.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds