Wall clock time and date at job start Tue Mar 31 2020 12:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36712 * 126.68864 * 2 1 4 4 C 1.46839 * 125.75606 * 359.97438 * 3 2 1 5 5 O 1.21677 * 119.99998 * 102.98285 * 4 3 2 6 6 N 1.34777 * 120.00117 * 282.98182 * 4 3 2 7 7 C 1.46502 * 120.00152 * 4.93759 * 6 4 3 8 8 C 1.50700 * 109.47434 * 270.00417 * 7 6 4 9 9 H 1.08004 * 119.99586 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99801 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00124 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99845 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47105 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47144 * 119.99926 * 12 10 8 15 15 H 1.48499 * 109.46843 * 239.99517 * 12 10 8 16 16 C 1.46505 * 119.99908 * 184.94515 * 6 4 3 17 17 C 1.52998 * 109.47258 * 125.16923 * 16 6 4 18 18 C 1.52998 * 109.46719 * 245.16940 * 16 6 4 19 19 N 1.38197 * 108.48365 * 180.24519 * 3 2 1 20 20 H 0.97003 * 125.34601 * 179.69249 * 19 3 2 21 21 C 1.33320 * 109.30731 * 359.53811 * 19 3 2 22 22 C 1.39497 * 107.90508 * 0.51149 * 21 19 3 23 23 C 1.47102 * 121.62290 * 179.51827 * 22 21 19 24 24 O 1.21320 * 122.44151 * 168.57659 * 23 22 21 25 25 C 1.52138 * 115.11810 * 348.59068 * 23 22 21 26 26 C 1.53187 * 108.42171 * 42.71676 * 25 23 22 27 27 C 1.50753 * 129.22244 * 180.30549 * 21 19 3 28 28 H 1.08994 * 109.47370 * 89.97130 * 1 2 3 29 29 H 1.08996 * 109.47167 * 209.97583 * 1 2 3 30 30 H 1.09004 * 109.46607 * 329.97372 * 1 2 3 31 31 H 1.09002 * 109.46462 * 30.00739 * 7 6 4 32 32 H 1.09007 * 109.46680 * 149.99912 * 7 6 4 33 33 H 0.97004 * 119.99866 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47313 * 5.16691 * 16 6 4 35 35 H 1.09005 * 109.47126 * 179.97438 * 17 16 6 36 36 H 1.09000 * 109.47278 * 300.00138 * 17 16 6 37 37 H 1.08997 * 109.47148 * 59.99667 * 17 16 6 38 38 H 1.09007 * 109.47360 * 299.99519 * 18 16 6 39 39 H 1.08997 * 109.47796 * 59.99953 * 18 16 6 40 40 H 1.09005 * 109.47076 * 180.02562 * 18 16 6 41 41 H 1.08997 * 109.67292 * 162.44835 * 25 23 22 42 42 H 1.09001 * 109.67594 * 282.94717 * 25 23 22 43 43 H 1.08990 * 109.23781 * 55.34884 * 26 25 23 44 44 H 1.09003 * 109.23299 * 174.76309 * 26 25 23 45 45 H 1.08995 * 109.51297 * 39.84611 * 27 21 19 46 46 H 1.09009 * 109.54932 * 279.73134 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.0963 0.0000 4 6 1.8809 2.4963 -0.0005 5 8 1.9227 3.1480 1.0261 6 7 1.4280 3.0594 -1.1382 7 6 1.2755 2.2467 -2.3476 8 6 2.5573 2.2788 -3.1394 9 1 3.4010 2.8480 -2.7781 10 6 2.6524 1.5823 -4.3255 11 7 1.6247 0.8897 -4.7656 12 14 4.2410 1.6226 -5.3074 13 1 5.2376 2.4679 -4.6020 14 1 4.7718 0.2428 -5.4470 15 1 3.9762 2.1897 -6.6541 16 6 1.0885 4.4843 -1.1655 17 6 1.8663 5.1725 -2.2890 18 6 -0.4129 4.6461 -1.4113 19 7 3.6366 0.6645 -0.0056 20 1 4.4168 1.2408 -0.0111 21 6 3.6623 -0.6684 0.0010 22 6 2.3434 -1.1228 -0.0006 23 6 2.0222 -2.5583 -0.0051 24 8 0.9006 -2.9749 0.1962 25 6 3.1989 -3.4825 -0.2801 26 6 4.4082 -2.9754 0.5118 27 6 4.8483 -1.5990 0.0050 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.0468 1.2184 -2.0677 32 1 0.4633 2.6473 -2.9543 33 1 1.6918 0.3994 -5.5999 34 1 1.3513 4.9389 -0.2103 35 1 1.6133 6.2326 -2.3096 36 1 2.9360 5.0572 -2.1139 37 1 1.6035 4.7180 -3.2442 38 1 -0.6758 4.1916 -2.3666 39 1 -0.9671 4.1558 -0.6110 40 1 -0.6655 5.7063 -1.4321 41 1 2.9516 -4.4957 0.0367 42 1 3.4288 -3.4770 -1.3455 43 1 4.1417 -2.9014 1.5661 44 1 5.2325 -3.6795 0.3986 45 1 5.6220 -1.1999 0.6607 46 1 5.2418 -1.6926 -1.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522961611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:24 Heat of formation + Delta-G solvation = -49.344152 kcal Electronic energy + Delta-G solvation = -28380.880379 eV Core-core repulsion = 24656.395025 eV Total energy + Delta-G solvation = -3724.485354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.41866 -39.10124 -38.17903 -35.83143 -35.32490 -33.02271 -32.51410 -31.35077 -28.99373 -28.49041 -27.35944 -26.60594 -26.21589 -23.48506 -23.00885 -22.00486 -21.09951 -19.42560 -18.28104 -18.00198 -17.18408 -16.51887 -16.27073 -15.67105 -15.12977 -14.64624 -14.52244 -14.27342 -14.11198 -13.90439 -13.83581 -13.57387 -13.26800 -12.89109 -12.62487 -12.42310 -12.32882 -12.15553 -12.06427 -11.77102 -11.68387 -11.60299 -11.34999 -11.30657 -11.06471 -11.02946 -10.87598 -10.83963 -10.77209 -10.37928 -10.00829 -9.66197 -9.46812 -9.12942 -8.57041 -8.39566 -7.81828 -7.47759 -6.17828 -4.23176 1.76519 2.47768 2.77961 3.15102 3.24785 3.25721 3.53034 3.71253 3.98571 4.29574 4.48997 4.73103 4.80092 4.92425 5.15677 5.22550 5.30703 5.42711 5.51189 5.58891 5.59760 5.64022 5.65175 5.74875 5.79194 5.85525 6.07539 6.08110 6.13419 6.18499 6.23419 6.29902 6.33718 6.38775 6.51929 6.66550 6.70367 6.79005 6.97445 7.16061 7.23820 7.29871 7.51585 7.69485 7.73897 8.06827 8.06999 8.23421 8.73599 8.88146 9.41806 10.89408 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.006132 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.676486 B = 4565.480393 C = 5813.507046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.048 4.048 3 C -0.016 4.016 4 C 0.587 3.413 5 O -0.567 6.567 6 N -0.573 5.573 7 C 0.232 3.768 8 C -0.526 4.526 9 H 0.057 0.943 10 C 0.067 3.933 11 N -0.885 5.885 12 Si 0.888 3.112 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.135 3.865 17 C -0.151 4.151 18 C -0.159 4.159 19 N -0.490 5.490 20 H 0.418 0.582 21 C 0.085 3.915 22 C -0.260 4.260 23 C 0.431 3.569 24 O -0.471 6.471 25 C -0.164 4.164 26 C -0.103 4.103 27 C -0.055 4.055 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.263 0.737 34 H 0.085 0.915 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.958 -2.858 6.738 8.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.054 4.054 3 C -0.128 4.128 4 C 0.373 3.627 5 O -0.448 6.448 6 N -0.303 5.303 7 C 0.112 3.888 8 C -0.565 4.565 9 H 0.075 0.925 10 C -0.136 4.136 11 N -0.524 5.524 12 Si 0.716 3.284 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.032 3.968 17 C -0.209 4.209 18 C -0.217 4.217 19 N -0.080 5.080 20 H 0.255 0.745 21 C -0.040 4.040 22 C -0.268 4.268 23 C 0.311 3.689 24 O -0.348 6.348 25 C -0.202 4.202 26 C -0.141 4.141 27 C -0.092 4.092 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.106 0.894 42 H 0.118 0.882 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.098 0.902 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.399 -2.687 7.178 8.837 hybrid contribution 1.448 0.345 -1.040 1.815 sum 5.846 -2.342 6.139 8.795 Atomic orbital electron populations 1.20304 0.89554 1.02105 1.02661 1.19075 0.95286 0.89780 1.01226 1.19573 0.82998 0.93880 1.16377 1.17125 0.77874 0.84294 0.83454 1.90730 1.57891 1.63638 1.32520 1.48327 1.61131 1.09376 1.11463 1.19557 0.97555 0.91169 0.80498 1.21388 0.98702 1.30504 1.05911 0.92515 1.24878 0.96287 0.95127 0.97319 1.69926 1.29723 1.31028 1.21693 0.86599 0.83737 0.77780 0.80248 1.19953 1.20949 1.20885 1.20927 0.94454 0.81515 0.99929 1.22074 1.00164 0.98491 1.00144 1.22129 0.95818 1.01236 1.02493 1.40957 1.07580 1.05969 1.53525 0.74518 1.20914 0.96328 0.83234 1.03503 1.19787 0.91957 0.94570 1.20477 1.21861 0.88390 0.88002 0.70691 1.90482 1.24828 1.80524 1.38976 1.22333 0.95221 0.99769 1.02857 1.21405 0.97341 0.95201 1.00183 1.20255 0.93215 0.92766 1.03011 0.90673 0.90793 0.92444 0.93222 0.94496 0.92680 0.89658 0.93166 0.92814 0.90330 0.91707 0.92841 0.92239 0.89377 0.88204 0.91150 0.90202 0.90189 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 9.56 36.00 0.34 -1.35 16 2 C -0.05 -0.97 5.15 -104.51 -0.54 -1.50 16 3 C -0.02 -0.32 5.57 -82.07 -0.46 -0.78 16 4 C 0.59 12.49 7.10 -12.78 -0.09 12.40 16 5 O -0.57 -12.99 16.46 5.21 0.09 -12.90 16 6 N -0.57 -11.89 2.38 -168.94 -0.40 -12.29 16 7 C 0.23 5.38 4.22 -5.19 -0.02 5.35 16 8 C -0.53 -13.00 7.84 -34.44 -0.27 -13.27 16 9 H 0.06 1.42 7.53 -52.48 -0.40 1.02 16 10 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -24.02 13.29 55.43 0.74 -23.28 16 12 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 16 C 0.14 2.46 3.23 -67.93 -0.22 2.24 16 17 C -0.15 -2.61 8.35 37.16 0.31 -2.30 16 18 C -0.16 -2.53 9.26 37.16 0.34 -2.18 16 19 N -0.49 -8.29 5.99 -5.30 -0.03 -8.33 16 20 H 0.42 6.04 8.96 -40.82 -0.37 5.67 16 21 C 0.08 1.32 7.19 -81.45 -0.59 0.73 16 22 C -0.26 -4.73 6.08 -105.17 -0.64 -5.37 16 23 C 0.43 7.31 7.09 -30.00 -0.21 7.10 16 24 O -0.47 -9.26 16.77 5.52 0.09 -9.17 16 25 C -0.16 -1.96 6.15 -27.07 -0.17 -2.13 16 26 C -0.10 -0.98 5.80 -26.56 -0.15 -1.14 16 27 C -0.05 -0.58 6.24 -27.79 -0.17 -0.76 16 28 H 0.07 1.48 7.46 -51.93 -0.39 1.09 16 29 H 0.07 1.36 7.11 -51.93 -0.37 0.99 16 30 H 0.06 1.05 7.93 -51.93 -0.41 0.63 16 31 H 0.05 1.24 4.96 -51.93 -0.26 0.99 16 32 H 0.04 0.91 6.70 -51.93 -0.35 0.56 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.09 1.58 6.94 -51.93 -0.36 1.22 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.97 7.98 -51.93 -0.41 0.56 16 37 H 0.08 1.52 6.95 -51.93 -0.36 1.16 16 38 H 0.06 1.09 6.88 -51.92 -0.36 0.73 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -31.31 371.02 -8.54 -39.85 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.97 Total: 6.93 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.63 Total: -1.34 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.30 Total: -43.90 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: 0.18 Total: -22.07 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.31 -8.54 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522961611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.494 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds