Wall clock time and date at job start Tue Mar 31 2020 12:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36712 * 126.68864 * 2 1 4 4 C 1.46839 * 125.75606 * 359.97438 * 3 2 1 5 5 O 1.21677 * 119.99998 * 102.98285 * 4 3 2 6 6 N 1.34777 * 120.00117 * 282.98182 * 4 3 2 7 7 C 1.46502 * 120.00152 * 4.93759 * 6 4 3 8 8 C 1.50700 * 109.47434 * 270.00417 * 7 6 4 9 9 H 1.08004 * 119.99586 * 359.97438 * 8 7 6 10 10 C 1.37871 * 119.99801 * 180.02562 * 8 7 6 11 11 N 1.31517 * 120.00124 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99845 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47105 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47144 * 119.99926 * 12 10 8 15 15 H 1.48499 * 109.46843 * 239.99517 * 12 10 8 16 16 C 1.46505 * 119.99908 * 184.94515 * 6 4 3 17 17 C 1.52998 * 109.47258 * 125.16923 * 16 6 4 18 18 C 1.52998 * 109.46719 * 245.16940 * 16 6 4 19 19 N 1.38197 * 108.48365 * 180.24519 * 3 2 1 20 20 H 0.97003 * 125.34601 * 179.69249 * 19 3 2 21 21 C 1.33320 * 109.30731 * 359.53811 * 19 3 2 22 22 C 1.39497 * 107.90508 * 0.51149 * 21 19 3 23 23 C 1.47102 * 121.62290 * 179.51827 * 22 21 19 24 24 O 1.21320 * 122.44151 * 168.57659 * 23 22 21 25 25 C 1.52138 * 115.11810 * 348.59068 * 23 22 21 26 26 C 1.53187 * 108.42171 * 42.71676 * 25 23 22 27 27 C 1.50753 * 129.22244 * 180.30549 * 21 19 3 28 28 H 1.08994 * 109.47370 * 89.97130 * 1 2 3 29 29 H 1.08996 * 109.47167 * 209.97583 * 1 2 3 30 30 H 1.09004 * 109.46607 * 329.97372 * 1 2 3 31 31 H 1.09002 * 109.46462 * 30.00739 * 7 6 4 32 32 H 1.09007 * 109.46680 * 149.99912 * 7 6 4 33 33 H 0.97004 * 119.99866 * 180.02562 * 11 10 8 34 34 H 1.08997 * 109.47313 * 5.16691 * 16 6 4 35 35 H 1.09005 * 109.47126 * 179.97438 * 17 16 6 36 36 H 1.09000 * 109.47278 * 300.00138 * 17 16 6 37 37 H 1.08997 * 109.47148 * 59.99667 * 17 16 6 38 38 H 1.09007 * 109.47360 * 299.99519 * 18 16 6 39 39 H 1.08997 * 109.47796 * 59.99953 * 18 16 6 40 40 H 1.09005 * 109.47076 * 180.02562 * 18 16 6 41 41 H 1.08997 * 109.67292 * 162.44835 * 25 23 22 42 42 H 1.09001 * 109.67594 * 282.94717 * 25 23 22 43 43 H 1.08990 * 109.23781 * 55.34884 * 26 25 23 44 44 H 1.09003 * 109.23299 * 174.76309 * 26 25 23 45 45 H 1.08995 * 109.51297 * 39.84611 * 27 21 19 46 46 H 1.09009 * 109.54932 * 279.73134 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3238 1.0963 0.0000 4 6 1.8809 2.4963 -0.0005 5 8 1.9227 3.1480 1.0261 6 7 1.4280 3.0594 -1.1382 7 6 1.2755 2.2467 -2.3476 8 6 2.5573 2.2788 -3.1394 9 1 3.4010 2.8480 -2.7781 10 6 2.6524 1.5823 -4.3255 11 7 1.6247 0.8897 -4.7656 12 14 4.2410 1.6226 -5.3074 13 1 5.2376 2.4679 -4.6020 14 1 4.7718 0.2428 -5.4470 15 1 3.9762 2.1897 -6.6541 16 6 1.0885 4.4843 -1.1655 17 6 1.8663 5.1725 -2.2890 18 6 -0.4129 4.6461 -1.4113 19 7 3.6366 0.6645 -0.0056 20 1 4.4168 1.2408 -0.0111 21 6 3.6623 -0.6684 0.0010 22 6 2.3434 -1.1228 -0.0006 23 6 2.0222 -2.5583 -0.0051 24 8 0.9006 -2.9749 0.1962 25 6 3.1989 -3.4825 -0.2801 26 6 4.4082 -2.9754 0.5118 27 6 4.8483 -1.5990 0.0050 28 1 -0.3634 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5143 31 1 1.0468 1.2184 -2.0677 32 1 0.4633 2.6473 -2.9543 33 1 1.6918 0.3994 -5.5999 34 1 1.3513 4.9389 -0.2103 35 1 1.6133 6.2326 -2.3096 36 1 2.9360 5.0572 -2.1139 37 1 1.6035 4.7180 -3.2442 38 1 -0.6758 4.1916 -2.3666 39 1 -0.9671 4.1558 -0.6110 40 1 -0.6655 5.7063 -1.4321 41 1 2.9516 -4.4957 0.0367 42 1 3.4288 -3.4770 -1.3455 43 1 4.1417 -2.9014 1.5661 44 1 5.2325 -3.6795 0.3986 45 1 5.6220 -1.1999 0.6607 46 1 5.2418 -1.6926 -1.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522961611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:23 Heat of formation + Delta-G solvation = -67.584028 kcal Electronic energy + Delta-G solvation = -28381.671319 eV Core-core repulsion = 24656.395025 eV Total energy + Delta-G solvation = -3725.276294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.78672 -40.67453 -39.54895 -37.48866 -36.36667 -34.86203 -34.01340 -32.95945 -30.19327 -29.69907 -29.22344 -28.01125 -27.66897 -25.05014 -24.64263 -23.17773 -22.35752 -20.84129 -19.82200 -19.25175 -18.78696 -18.37927 -17.82969 -17.04272 -16.47412 -16.34794 -15.94441 -15.64978 -15.48905 -15.16603 -15.01152 -14.90244 -14.70100 -14.37664 -14.26735 -13.98257 -13.84252 -13.50813 -13.38590 -13.29390 -13.21170 -12.97228 -12.91783 -12.72912 -12.61443 -12.38516 -12.32163 -12.09262 -11.94361 -11.80728 -11.63721 -11.50263 -11.10922 -10.56190 -10.44380 -9.83336 -9.54709 -8.88307 -8.14955 -6.26553 0.49430 0.99111 1.24864 1.37713 1.42096 1.50573 2.11076 2.29588 2.36998 2.55380 3.16622 3.34066 3.69045 3.74770 3.90332 4.00846 4.06586 4.10673 4.22462 4.25801 4.38243 4.47039 4.58140 4.65354 4.69293 4.78022 4.79585 4.80081 4.85762 4.89390 4.92790 4.97189 5.09314 5.11094 5.12151 5.19879 5.32815 5.37637 5.41468 5.48891 5.68974 5.74012 5.81702 5.83945 6.11151 6.43857 6.48344 6.79197 6.82093 7.14680 7.42548 8.91906 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010747 B = 0.006132 C = 0.004815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.676486 B = 4565.480393 C = 5813.507046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.071 4.071 3 C -0.049 4.049 4 C 0.586 3.414 5 O -0.589 6.589 6 N -0.574 5.574 7 C 0.252 3.748 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.021 3.979 11 N -0.920 5.920 12 Si 0.949 3.051 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.284 1.284 16 C 0.125 3.875 17 C -0.140 4.140 18 C -0.151 4.151 19 N -0.489 5.489 20 H 0.429 0.571 21 C 0.115 3.885 22 C -0.301 4.301 23 C 0.421 3.579 24 O -0.513 6.513 25 C -0.156 4.156 26 C -0.097 4.097 27 C -0.056 4.056 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.029 0.971 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.054 0.946 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.961 -3.235 6.740 10.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 C -0.160 4.160 4 C 0.373 3.627 5 O -0.471 6.471 6 N -0.303 5.303 7 C 0.131 3.869 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.178 4.178 11 N -0.560 5.560 12 Si 0.775 3.225 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.211 1.211 16 C 0.023 3.977 17 C -0.198 4.198 18 C -0.209 4.209 19 N -0.081 5.081 20 H 0.268 0.732 21 C -0.010 4.010 22 C -0.308 4.308 23 C 0.304 3.696 24 O -0.393 6.393 25 C -0.194 4.194 26 C -0.135 4.135 27 C -0.093 4.093 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.126 0.874 43 H 0.089 0.911 44 H 0.141 0.859 45 H 0.133 0.867 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.422 -3.031 7.183 10.764 hybrid contribution 0.485 0.495 -1.009 1.224 sum 7.907 -2.536 6.174 10.348 Atomic orbital electron populations 1.20169 0.90019 1.01956 1.01502 1.19362 0.95590 0.91097 1.01677 1.19434 0.84589 0.93137 1.18872 1.17327 0.77431 0.84816 0.83102 1.90696 1.58930 1.64467 1.32999 1.48345 1.60988 1.10312 1.10621 1.19121 0.96558 0.90306 0.80874 1.21486 0.98776 1.29785 1.05843 0.92784 1.25583 0.99073 0.94858 0.98328 1.70049 1.31677 1.32086 1.22170 0.85637 0.80307 0.77906 0.78608 1.19064 1.20461 1.21053 1.21205 0.96070 0.80114 1.00328 1.21973 0.99218 1.00363 0.98253 1.22068 0.94083 1.03298 1.01431 1.41012 1.06868 1.06805 1.53375 0.73206 1.21806 0.97296 0.82965 0.98974 1.20215 0.93088 0.95205 1.22314 1.22643 0.89344 0.88352 0.69297 1.90453 1.26802 1.80990 1.41048 1.22369 0.93855 0.99324 1.03815 1.21473 0.97317 0.95185 0.99494 1.20611 0.91686 0.92107 1.04938 0.92285 0.90789 0.92573 0.95273 0.96238 0.92755 0.89659 0.89618 0.93894 0.92640 0.93043 0.93357 0.88877 0.87698 0.87392 0.91140 0.85946 0.86740 0.87615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.23 9.56 71.24 0.68 -2.55 16 2 C -0.07 -2.98 5.15 -19.79 -0.10 -3.08 16 3 C -0.05 -2.00 5.57 40.03 0.22 -1.78 16 4 C 0.59 25.63 7.10 86.49 0.61 26.24 16 5 O -0.59 -27.47 16.46 -4.27 -0.07 -27.54 16 6 N -0.57 -24.41 2.38 -806.63 -1.92 -26.33 16 7 C 0.25 12.10 4.22 85.63 0.36 12.46 16 8 C -0.52 -25.91 7.84 25.60 0.20 -25.71 16 9 H 0.05 2.69 7.53 -2.91 -0.02 2.67 16 10 C 0.02 1.10 5.46 84.65 0.46 1.56 16 11 N -0.92 -50.70 13.29 21.45 0.28 -50.42 16 12 Si 0.95 40.36 29.54 68.60 2.03 42.38 16 13 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 14 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 15 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 16 C 0.13 4.56 3.23 44.99 0.15 4.70 16 17 C -0.14 -4.74 8.35 71.98 0.60 -4.14 16 18 C -0.15 -4.78 9.26 71.98 0.67 -4.11 16 19 N -0.49 -16.18 5.99 -170.69 -1.02 -17.21 16 20 H 0.43 11.83 8.96 -92.71 -0.83 11.00 16 21 C 0.12 3.40 7.19 42.65 0.31 3.71 16 22 C -0.30 -11.03 6.08 -20.22 -0.12 -11.15 16 23 C 0.42 14.26 7.09 28.48 0.20 14.46 16 24 O -0.51 -20.83 16.77 -3.15 -0.05 -20.88 16 25 C -0.16 -3.33 6.15 30.37 0.19 -3.14 16 26 C -0.10 -1.41 5.80 30.70 0.18 -1.24 16 27 C -0.06 -0.95 6.24 29.91 0.19 -0.76 16 28 H 0.06 2.54 7.46 -2.39 -0.02 2.52 16 29 H 0.07 2.93 7.11 -2.39 -0.02 2.91 16 30 H 0.06 2.21 7.93 -2.38 -0.02 2.19 16 31 H 0.03 1.54 4.96 -2.39 -0.01 1.53 16 32 H 0.02 1.01 6.70 -2.38 -0.02 0.99 16 33 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 34 H 0.09 3.13 6.94 -2.39 -0.02 3.11 16 35 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.04 1.52 7.98 -2.39 -0.02 1.50 16 37 H 0.05 2.13 6.95 -2.39 -0.02 2.12 16 38 H 0.05 1.76 6.88 -2.38 -0.02 1.74 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 41 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.11 2.17 8.14 -2.39 -0.02 2.16 16 43 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -70.95 371.02 4.21 -66.74 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: 0.17 Total: 27.77 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.79 Total: 5.48 kcal Atomic # 7 Polarization: -91.29 SS G_CDS: -2.66 Total: -93.95 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -0.12 Total: -48.42 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.38 kcal Total: -70.95 4.21 -66.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522961611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.844 kcal (2) G-P(sol) polarization free energy of solvation -70.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds