Wall clock time and date at job start Tue Mar 31 2020 13:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38312 * 119.92787 * 2 1 4 4 C 1.38070 * 120.07987 * 180.20919 * 3 2 1 5 5 C 1.38948 * 119.92088 * 359.51831 * 4 3 2 6 6 N 1.39724 * 120.07412 * 180.22939 * 5 4 3 7 7 C 1.34782 * 120.00265 * 324.64016 * 6 5 4 8 8 O 1.21376 * 119.99854 * 4.87167 * 7 6 5 9 9 C 1.49350 * 120.00019 * 184.87241 * 7 6 5 10 10 O 1.21359 * 120.00309 * 0.61325 * 9 7 6 11 11 N 1.34779 * 119.99613 * 180.61240 * 9 7 6 12 12 C 1.46495 * 120.00474 * 354.61270 * 11 9 7 13 13 C 1.50707 * 109.46928 * 83.60692 * 12 11 9 14 14 H 1.07995 * 119.99708 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99961 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99933 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47494 * 89.99880 * 17 15 13 19 19 H 1.48500 * 109.47067 * 210.00335 * 17 15 13 20 20 H 1.48502 * 109.47091 * 330.00082 * 17 15 13 21 21 C 1.46505 * 119.99876 * 174.61336 * 11 9 7 22 22 C 1.53001 * 109.47121 * 124.44630 * 21 11 9 23 23 C 1.52999 * 109.47366 * 244.44789 * 21 11 9 24 24 C 1.38903 * 119.85165 * 0.24880 * 5 4 3 25 25 C 1.38124 * 119.92223 * 0.02562 * 24 5 4 26 26 C 1.50691 * 119.96099 * 179.97438 * 25 24 5 27 27 H 1.09004 * 109.47082 * 270.25487 * 1 2 3 28 28 H 1.08997 * 109.46921 * 30.25284 * 1 2 3 29 29 H 1.08999 * 109.47156 * 150.25380 * 1 2 3 30 30 H 1.08007 * 119.95720 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.03883 * 179.78770 * 4 3 2 32 32 H 0.97000 * 120.00361 * 144.64090 * 6 5 4 33 33 H 1.08998 * 109.47652 * 203.60894 * 12 11 9 34 34 H 1.09002 * 109.46820 * 323.61335 * 12 11 9 35 35 H 0.96998 * 120.00323 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.46941 * 4.45265 * 21 11 9 37 37 H 1.08994 * 109.47036 * 59.99901 * 22 21 11 38 38 H 1.08994 * 109.47252 * 180.02562 * 22 21 11 39 39 H 1.09000 * 109.47139 * 300.00106 * 22 21 11 40 40 H 1.08993 * 109.47124 * 59.99984 * 23 21 11 41 41 H 1.08994 * 109.46993 * 179.97438 * 23 21 11 42 42 H 1.09008 * 109.46842 * 300.00069 * 23 21 11 43 43 H 1.07996 * 120.04201 * 180.02562 * 24 5 4 44 44 H 1.08998 * 109.47627 * 89.99799 * 26 25 24 45 45 H 1.09003 * 109.46896 * 209.99840 * 26 25 24 46 46 H 1.09005 * 109.47828 * 329.99532 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5777 1.2024 -0.0044 5 6 4.2740 -0.0001 0.0014 6 7 5.6713 -0.0001 0.0018 7 6 6.3455 0.9487 -0.6778 8 8 5.7421 1.8537 -1.2166 9 6 7.8349 0.8866 -0.7679 10 8 8.4374 -0.0243 -0.2387 11 7 8.5099 1.8422 -1.4371 12 6 7.7788 2.8752 -2.1749 13 6 7.3797 3.9797 -1.2304 14 1 7.6446 3.9183 -0.1852 15 6 6.6764 5.0684 -1.7006 16 7 6.3534 5.1428 -2.9732 17 14 6.1823 6.4376 -0.5300 18 1 7.2554 7.4631 -0.4865 19 1 4.9202 7.0615 -1.0025 20 1 5.9783 5.8767 0.8298 21 6 9.9749 1.8478 -1.4267 22 6 10.4953 1.8291 -2.8654 23 6 10.4751 3.1091 -0.7198 24 6 3.5780 -1.2021 0.0062 25 6 2.1967 -1.1984 0.0048 26 6 1.4407 -2.5020 0.0095 27 1 -0.3633 0.0046 1.0277 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5099 30 1 1.6551 2.1330 -0.0004 31 1 4.1159 2.1387 -0.0078 32 1 6.1562 -0.6829 0.4912 33 1 8.4167 3.2814 -2.9599 34 1 6.8855 2.4390 -2.6219 35 1 5.8589 5.9089 -3.3042 36 1 10.3378 0.9666 -0.8976 37 1 10.1323 2.7101 -3.3945 38 1 11.5852 1.8328 -2.8576 39 1 10.1389 0.9304 -3.3689 40 1 10.1045 3.1225 0.3051 41 1 11.5650 3.1130 -0.7117 42 1 10.1122 3.9903 -1.2490 43 1 4.1160 -2.1384 0.0111 44 1 1.2574 -2.8120 1.0383 45 1 0.4890 -2.3718 -0.5058 46 1 2.0287 -3.2650 -0.5006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000525863357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:43 Heat of formation + Delta-G solvation = -37.289184 kcal Electronic energy + Delta-G solvation = -27376.335338 eV Core-core repulsion = 23652.372726 eV Total energy + Delta-G solvation = -3723.962611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.56156 -39.35599 -37.88911 -36.16924 -34.84866 -32.79845 -32.35703 -31.39839 -31.22083 -27.48897 -27.19739 -26.73024 -26.26016 -24.15123 -22.94809 -22.13131 -21.29190 -19.72174 -18.86172 -17.44628 -16.59627 -16.52740 -16.16934 -15.57607 -15.25915 -14.96402 -14.62060 -14.31509 -14.15074 -13.80202 -13.60910 -13.45850 -13.13502 -12.91390 -12.82082 -12.63621 -12.32583 -12.31169 -12.01788 -11.79212 -11.76792 -11.65370 -11.53334 -11.16807 -11.02885 -10.93043 -10.84438 -10.72370 -10.55782 -10.18580 -9.93736 -9.80424 -9.58586 -8.71767 -8.52064 -8.24730 -7.88653 -7.69508 -6.01203 -4.02022 1.40150 1.58365 2.19954 2.93214 3.30027 3.37281 3.40620 3.78690 4.04732 4.11746 4.46345 4.85839 4.95410 5.02004 5.15946 5.16598 5.35159 5.39439 5.41492 5.46589 5.59099 5.63356 5.64754 5.74528 5.78433 5.82645 5.95565 6.02498 6.04012 6.08879 6.21608 6.28131 6.35672 6.53863 6.60103 6.62939 6.74586 6.77975 6.82896 6.92575 7.26382 7.38460 7.45243 7.62784 7.88086 8.11998 8.21652 8.39927 8.69792 8.97601 9.59516 11.07849 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.004516 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.866473 B = 6198.336300 C = 7947.153686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.111 4.111 3 C -0.097 4.097 4 C -0.119 4.119 5 C 0.155 3.845 6 N -0.664 5.664 7 C 0.487 3.513 8 O -0.428 6.428 9 C 0.508 3.492 10 O -0.565 6.565 11 N -0.554 5.554 12 C 0.227 3.773 13 C -0.507 4.507 14 H 0.053 0.947 15 C 0.069 3.931 16 N -0.890 5.890 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.132 3.868 22 C -0.159 4.159 23 C -0.155 4.155 24 C -0.146 4.146 25 C -0.075 4.075 26 C -0.113 4.113 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.123 0.877 31 H 0.146 0.854 32 H 0.414 0.586 33 H 0.036 0.964 34 H 0.064 0.936 35 H 0.261 0.739 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.899 -11.454 4.560 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.111 4.111 3 C -0.115 4.115 4 C -0.139 4.139 5 C 0.060 3.940 6 N -0.312 5.312 7 C 0.269 3.731 8 O -0.295 6.295 9 C 0.290 3.710 10 O -0.446 6.446 11 N -0.284 5.284 12 C 0.109 3.891 13 C -0.546 4.546 14 H 0.071 0.929 15 C -0.133 4.133 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.029 3.971 22 C -0.217 4.217 23 C -0.212 4.212 24 C -0.166 4.166 25 C -0.076 4.076 26 C -0.169 4.169 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.163 0.837 32 H 0.251 0.749 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.141 0.859 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.028 -11.052 4.212 12.852 hybrid contribution -0.027 0.679 0.834 1.075 sum -5.054 -10.374 5.045 12.594 Atomic orbital electron populations 1.20792 0.91609 1.02543 1.01884 1.19690 0.95776 0.92642 1.03026 1.20927 0.93697 0.97407 0.99516 1.21457 0.94188 0.98402 0.99892 1.17713 0.82324 0.93955 0.99994 1.43217 1.04304 1.32069 1.51621 1.20417 0.89422 0.82662 0.80610 1.90985 1.68900 1.29468 1.40163 1.19771 0.87733 0.82980 0.80491 1.90635 1.69977 1.35063 1.48969 1.48372 1.06269 1.27070 1.46708 1.19930 0.92216 0.85142 0.91847 1.21168 1.35278 1.03312 0.94831 0.92853 1.24776 0.95525 0.98026 0.94942 1.69908 1.39566 1.30257 1.13211 0.86643 0.78040 0.82248 0.81319 1.20820 1.21210 1.20096 1.21033 0.79747 0.99552 0.96765 1.22127 1.00430 1.02795 0.96349 1.22088 0.99339 0.98781 1.01039 1.20713 0.93688 0.96404 1.05821 1.19417 0.92776 0.94804 1.00561 1.20811 0.99988 0.94066 1.02073 0.91605 0.91801 0.91504 0.85886 0.83654 0.74892 0.94606 0.91886 0.92921 0.89327 0.91197 0.91978 0.92806 0.92814 0.92793 0.90350 0.85922 0.91379 0.91241 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.60 36.00 0.35 -0.75 16 2 C -0.11 -1.45 5.88 -104.58 -0.62 -2.06 16 3 C -0.10 -1.47 9.69 -39.62 -0.38 -1.85 16 4 C -0.12 -2.12 8.69 -39.38 -0.34 -2.46 16 5 C 0.15 2.56 6.29 -83.75 -0.53 2.03 16 6 N -0.66 -11.32 5.32 -10.30 -0.05 -11.38 16 7 C 0.49 10.08 7.57 -11.63 -0.09 9.99 16 8 O -0.43 -10.18 9.57 5.47 0.05 -10.13 16 9 C 0.51 10.69 7.67 -11.63 -0.09 10.60 16 10 O -0.56 -11.81 15.82 5.49 0.09 -11.72 16 11 N -0.55 -11.74 2.38 -168.01 -0.40 -12.14 16 12 C 0.23 5.54 4.12 -5.19 -0.02 5.52 16 13 C -0.51 -13.41 6.82 -34.44 -0.23 -13.64 16 14 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 15 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 16 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.13 2.38 3.25 -67.93 -0.22 2.16 16 22 C -0.16 -2.50 9.10 37.16 0.34 -2.16 16 23 C -0.15 -2.66 8.91 37.16 0.33 -2.33 16 24 C -0.15 -2.01 9.62 -39.38 -0.38 -2.39 16 25 C -0.07 -0.95 5.88 -104.65 -0.62 -1.56 16 26 C -0.11 -1.03 9.60 36.00 0.35 -0.68 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 29 H 0.07 0.56 5.94 -51.93 -0.31 0.26 16 30 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 31 H 0.15 2.99 6.24 -52.49 -0.33 2.66 16 32 H 0.41 6.13 8.30 -40.82 -0.34 5.79 16 33 H 0.04 0.90 6.21 -51.93 -0.32 0.58 16 34 H 0.06 1.70 5.84 -51.93 -0.30 1.40 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 37 H 0.07 1.19 6.51 -51.93 -0.34 0.85 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.51 7.27 -51.92 -0.38 1.13 16 43 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.56 5.94 -51.93 -0.31 0.25 16 46 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 371.78 15.07 5.60 5.60 Total: -1.00 -30.42 371.78 -8.00 -38.42 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -6.75 Total: 7.44 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -2.25 Total: 2.23 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.28 Total: -48.25 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.14 Total: -21.85 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.42 -8.00 -38.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525863357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.135 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds