Wall clock time and date at job start Tue Mar 31 2020 13:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38312 * 119.92787 * 2 1 4 4 C 1.38070 * 120.07987 * 180.20919 * 3 2 1 5 5 C 1.38948 * 119.92088 * 359.51831 * 4 3 2 6 6 N 1.39724 * 120.07412 * 180.22939 * 5 4 3 7 7 C 1.34782 * 120.00265 * 324.64016 * 6 5 4 8 8 O 1.21376 * 119.99854 * 4.87167 * 7 6 5 9 9 C 1.49350 * 120.00019 * 184.87241 * 7 6 5 10 10 O 1.21359 * 120.00309 * 0.61325 * 9 7 6 11 11 N 1.34779 * 119.99613 * 180.61240 * 9 7 6 12 12 C 1.46495 * 120.00474 * 354.61270 * 11 9 7 13 13 C 1.50707 * 109.46928 * 83.60692 * 12 11 9 14 14 H 1.07995 * 119.99708 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99961 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99933 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47494 * 89.99880 * 17 15 13 19 19 H 1.48500 * 109.47067 * 210.00335 * 17 15 13 20 20 H 1.48502 * 109.47091 * 330.00082 * 17 15 13 21 21 C 1.46505 * 119.99876 * 174.61336 * 11 9 7 22 22 C 1.53001 * 109.47121 * 124.44630 * 21 11 9 23 23 C 1.52999 * 109.47366 * 244.44789 * 21 11 9 24 24 C 1.38903 * 119.85165 * 0.24880 * 5 4 3 25 25 C 1.38124 * 119.92223 * 0.02562 * 24 5 4 26 26 C 1.50691 * 119.96099 * 179.97438 * 25 24 5 27 27 H 1.09004 * 109.47082 * 270.25487 * 1 2 3 28 28 H 1.08997 * 109.46921 * 30.25284 * 1 2 3 29 29 H 1.08999 * 109.47156 * 150.25380 * 1 2 3 30 30 H 1.08007 * 119.95720 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.03883 * 179.78770 * 4 3 2 32 32 H 0.97000 * 120.00361 * 144.64090 * 6 5 4 33 33 H 1.08998 * 109.47652 * 203.60894 * 12 11 9 34 34 H 1.09002 * 109.46820 * 323.61335 * 12 11 9 35 35 H 0.96998 * 120.00323 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.46941 * 4.45265 * 21 11 9 37 37 H 1.08994 * 109.47036 * 59.99901 * 22 21 11 38 38 H 1.08994 * 109.47252 * 180.02562 * 22 21 11 39 39 H 1.09000 * 109.47139 * 300.00106 * 22 21 11 40 40 H 1.08993 * 109.47124 * 59.99984 * 23 21 11 41 41 H 1.08994 * 109.46993 * 179.97438 * 23 21 11 42 42 H 1.09008 * 109.46842 * 300.00069 * 23 21 11 43 43 H 1.07996 * 120.04201 * 180.02562 * 24 5 4 44 44 H 1.08998 * 109.47627 * 89.99799 * 26 25 24 45 45 H 1.09003 * 109.46896 * 209.99840 * 26 25 24 46 46 H 1.09005 * 109.47828 * 329.99532 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1987 0.0000 4 6 3.5777 1.2024 -0.0044 5 6 4.2740 -0.0001 0.0014 6 7 5.6713 -0.0001 0.0018 7 6 6.3455 0.9487 -0.6778 8 8 5.7421 1.8537 -1.2166 9 6 7.8349 0.8866 -0.7679 10 8 8.4374 -0.0243 -0.2387 11 7 8.5099 1.8422 -1.4371 12 6 7.7788 2.8752 -2.1749 13 6 7.3797 3.9797 -1.2304 14 1 7.6446 3.9183 -0.1852 15 6 6.6764 5.0684 -1.7006 16 7 6.3534 5.1428 -2.9732 17 14 6.1823 6.4376 -0.5300 18 1 7.2554 7.4631 -0.4865 19 1 4.9202 7.0615 -1.0025 20 1 5.9783 5.8767 0.8298 21 6 9.9749 1.8478 -1.4267 22 6 10.4953 1.8291 -2.8654 23 6 10.4751 3.1091 -0.7198 24 6 3.5780 -1.2021 0.0062 25 6 2.1967 -1.1984 0.0048 26 6 1.4407 -2.5020 0.0095 27 1 -0.3633 0.0046 1.0277 28 1 -0.3633 0.8877 -0.5177 29 1 -0.3633 -0.8922 -0.5099 30 1 1.6551 2.1330 -0.0004 31 1 4.1159 2.1387 -0.0078 32 1 6.1562 -0.6829 0.4912 33 1 8.4167 3.2814 -2.9599 34 1 6.8855 2.4390 -2.6219 35 1 5.8589 5.9089 -3.3042 36 1 10.3378 0.9666 -0.8976 37 1 10.1323 2.7101 -3.3945 38 1 11.5852 1.8328 -2.8576 39 1 10.1389 0.9304 -3.3689 40 1 10.1045 3.1225 0.3051 41 1 11.5650 3.1130 -0.7117 42 1 10.1122 3.9903 -1.2490 43 1 4.1160 -2.1384 0.0111 44 1 1.2574 -2.8120 1.0383 45 1 0.4890 -2.3718 -0.5058 46 1 2.0287 -3.2650 -0.5006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000525863357.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:42 Heat of formation + Delta-G solvation = -54.743904 kcal Electronic energy + Delta-G solvation = -27377.092231 eV Core-core repulsion = 23652.372726 eV Total energy + Delta-G solvation = -3724.719505 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.09400 -40.70779 -39.36312 -37.82640 -36.22675 -34.80070 -33.43979 -32.91547 -32.48180 -29.21982 -28.45865 -28.08053 -27.40223 -25.58090 -24.91571 -23.27289 -22.62795 -21.04670 -20.40490 -19.05675 -18.54841 -18.16174 -17.61753 -16.92573 -16.74788 -16.39874 -16.23212 -15.95315 -15.25563 -15.14457 -14.97870 -14.78535 -14.62275 -14.30863 -14.02948 -13.91237 -13.56577 -13.52158 -13.46011 -13.33428 -12.99955 -12.88817 -12.80513 -12.78529 -12.64765 -12.41080 -12.28895 -12.11107 -11.96931 -11.88741 -11.68160 -11.51675 -11.11411 -10.60998 -10.12712 -9.66916 -9.62888 -8.95672 -8.12389 -6.18132 0.10274 0.43171 0.66190 1.35526 1.37634 1.42842 1.46829 2.21749 2.40079 2.61936 2.79943 3.21906 3.40651 3.89833 3.95502 3.99014 4.13211 4.20835 4.30491 4.36698 4.38601 4.48463 4.60886 4.78431 4.80483 4.81695 4.87930 4.90443 4.96026 4.96373 4.99993 5.10619 5.12578 5.21089 5.23976 5.36984 5.41944 5.45890 5.49544 5.52359 5.64964 5.74502 5.78452 6.10415 6.13587 6.17777 6.33814 6.79725 6.85884 7.09831 7.46145 8.96285 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012252 B = 0.004516 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.866473 B = 6198.336300 C = 7947.153686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.106 4.106 3 C -0.110 4.110 4 C -0.148 4.148 5 C 0.128 3.872 6 N -0.646 5.646 7 C 0.484 3.516 8 O -0.469 6.469 9 C 0.504 3.496 10 O -0.562 6.562 11 N -0.559 5.559 12 C 0.249 3.751 13 C -0.502 4.502 14 H 0.042 0.958 15 C 0.023 3.977 16 N -0.922 5.922 17 Si 0.944 3.056 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.279 1.279 21 C 0.123 3.877 22 C -0.151 4.151 23 C -0.147 4.147 24 C -0.139 4.139 25 C -0.073 4.073 26 C -0.111 4.111 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.105 0.895 32 H 0.425 0.575 33 H 0.028 0.972 34 H 0.036 0.964 35 H 0.261 0.739 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.092 0.908 42 H 0.052 0.948 43 H 0.149 0.851 44 H 0.086 0.914 45 H 0.084 0.916 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 -13.491 5.475 15.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.107 4.107 3 C -0.129 4.129 4 C -0.168 4.168 5 C 0.034 3.966 6 N -0.295 5.295 7 C 0.266 3.734 8 O -0.339 6.339 9 C 0.287 3.713 10 O -0.444 6.444 11 N -0.289 5.289 12 C 0.129 3.871 13 C -0.540 4.540 14 H 0.060 0.940 15 C -0.176 4.176 16 N -0.563 5.563 17 Si 0.771 3.229 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.205 1.205 21 C 0.021 3.979 22 C -0.209 4.209 23 C -0.205 4.205 24 C -0.159 4.159 25 C -0.074 4.074 26 C -0.167 4.167 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.146 0.854 31 H 0.123 0.877 32 H 0.264 0.736 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.116 0.884 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.111 0.889 42 H 0.071 0.929 43 H 0.166 0.834 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.681 -13.129 5.161 15.208 hybrid contribution 0.121 1.181 0.602 1.331 sum -5.560 -11.947 5.763 14.383 Atomic orbital electron populations 1.20878 0.88817 1.03727 1.03271 1.20119 0.97789 0.91877 1.00914 1.21079 0.92769 0.98989 1.00066 1.21263 0.95432 0.97457 1.02670 1.17908 0.81785 0.94769 1.02126 1.43041 1.04856 1.31117 1.50490 1.20497 0.89397 0.82909 0.80625 1.90982 1.69437 1.31245 1.42259 1.19906 0.88033 0.82992 0.80391 1.90616 1.70060 1.34839 1.48911 1.48386 1.07705 1.26373 1.46464 1.19400 0.91221 0.85064 0.91384 1.21267 1.34583 1.03791 0.94401 0.93955 1.25442 0.95742 1.00203 0.96215 1.70009 1.40635 1.30989 1.14636 0.85777 0.77975 0.79993 0.79200 1.19428 1.21077 1.20468 1.21365 0.77744 1.00191 0.98568 1.22075 1.02604 1.01874 0.94332 1.22024 1.01714 0.97180 0.99549 1.21018 0.94467 0.96061 1.04404 1.19936 0.92519 0.96440 0.98467 1.20905 1.00252 0.91949 1.03600 0.89942 0.91610 0.89411 0.85371 0.87682 0.73623 0.95436 0.94667 0.92966 0.88525 0.93007 0.88354 0.92805 0.94176 0.88904 0.92858 0.83381 0.89583 0.89698 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.60 71.24 0.68 -1.15 16 2 C -0.11 -2.61 5.88 -19.84 -0.12 -2.72 16 3 C -0.11 -3.42 9.69 22.25 0.22 -3.21 16 4 C -0.15 -5.57 8.69 22.40 0.19 -5.38 16 5 C 0.13 4.32 6.29 38.21 0.24 4.56 16 6 N -0.65 -22.67 5.32 -304.84 -1.62 -24.29 16 7 C 0.48 20.98 7.57 87.24 0.66 21.64 16 8 O -0.47 -23.85 9.57 -3.33 -0.03 -23.88 16 9 C 0.50 21.74 7.67 87.24 0.67 22.41 16 10 O -0.56 -23.40 15.82 -3.27 -0.05 -23.45 16 11 N -0.56 -24.32 2.38 -803.82 -1.91 -26.23 16 12 C 0.25 12.74 4.12 85.64 0.35 13.09 16 13 C -0.50 -27.62 6.82 25.60 0.17 -27.44 16 14 H 0.04 2.38 7.81 -2.91 -0.02 2.35 16 15 C 0.02 1.29 5.46 84.66 0.46 1.76 16 16 N -0.92 -54.64 13.29 21.45 0.28 -54.35 16 17 Si 0.94 45.22 29.54 68.60 2.03 47.24 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 21 C 0.12 4.37 3.25 44.99 0.15 4.51 16 22 C -0.15 -4.58 9.10 71.98 0.66 -3.93 16 23 C -0.15 -4.96 8.91 71.98 0.64 -4.32 16 24 C -0.14 -3.63 9.62 22.40 0.22 -3.41 16 25 C -0.07 -1.65 5.88 -19.89 -0.12 -1.77 16 26 C -0.11 -1.55 9.60 71.23 0.68 -0.86 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 29 H 0.09 1.11 5.94 -2.39 -0.01 1.10 16 30 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.11 4.77 6.24 -2.91 -0.02 4.76 16 32 H 0.43 12.58 8.30 -92.71 -0.77 11.81 16 33 H 0.03 1.45 6.21 -2.39 -0.01 1.44 16 34 H 0.04 2.03 5.84 -2.39 -0.01 2.02 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 36 H 0.10 3.30 6.91 -2.39 -0.02 3.28 16 37 H 0.05 1.76 6.51 -2.39 -0.02 1.75 16 38 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 39 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.05 2.07 7.27 -2.38 -0.02 2.05 16 43 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 44 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.08 0.96 5.94 -2.39 -0.01 0.95 16 46 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 Total: -1.00 -69.13 371.78 4.69 -64.43 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.23 Total: 26.75 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 5.76 Total: 13.78 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -3.25 Total: -104.87 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.08 Total: -47.33 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -69.13 4.69 -64.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000525863357.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.691 kcal (2) G-P(sol) polarization free energy of solvation -69.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds