Wall clock time and date at job start Tue Mar 31 2020 13:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38320 * 119.96311 * 2 1 4 4 C 1.38264 * 120.15246 * 180.27597 * 3 2 1 5 5 C 1.38122 * 120.07819 * 359.44423 * 4 3 2 6 6 C 1.38906 * 119.91902 * 0.27751 * 5 4 3 7 7 N 1.39731 * 120.07449 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99984 * 326.25779 * 7 6 5 9 9 O 1.21371 * 119.99851 * 4.86898 * 8 7 6 10 10 C 1.49348 * 119.99848 * 184.87204 * 8 7 6 11 11 O 1.21358 * 120.00097 * 0.21799 * 10 8 7 12 12 N 1.34780 * 119.99975 * 180.21362 * 10 8 7 13 13 C 1.46495 * 119.99722 * 354.60381 * 12 10 8 14 14 C 1.50700 * 109.47249 * 83.66444 * 13 12 10 15 15 H 1.07994 * 120.00244 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99874 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00081 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47242 * 89.99865 * 18 16 14 20 20 H 1.48501 * 109.46965 * 210.00064 * 18 16 14 21 21 H 1.48501 * 109.46968 * 330.00035 * 18 16 14 22 22 C 1.46497 * 119.99947 * 174.60208 * 12 10 8 23 23 C 1.53000 * 109.47148 * 304.45980 * 22 12 10 24 24 C 1.53001 * 109.47005 * 64.46260 * 22 12 10 25 25 C 1.38080 * 119.96144 * 179.72085 * 2 1 3 26 26 C 1.50697 * 120.03801 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.47508 * 270.27554 * 1 2 3 28 28 H 1.09001 * 109.47312 * 30.27856 * 1 2 3 29 29 H 1.09007 * 109.46869 * 150.27850 * 1 2 3 30 30 H 1.07999 * 119.92149 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.96063 * 179.71904 * 4 3 2 32 32 H 1.07996 * 120.04192 * 180.29675 * 5 4 3 33 33 H 0.96995 * 119.99801 * 146.25547 * 7 6 5 34 34 H 1.08999 * 109.46885 * 203.66221 * 13 12 10 35 35 H 1.09006 * 109.47475 * 323.66137 * 13 12 10 36 36 H 0.97006 * 119.99876 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.46920 * 184.46147 * 22 12 10 38 38 H 1.09003 * 109.46997 * 65.68928 * 23 22 12 39 39 H 1.08999 * 109.47037 * 185.68300 * 23 22 12 40 40 H 1.08997 * 109.47376 * 305.68534 * 23 22 12 41 41 H 1.08998 * 109.47232 * 64.68075 * 24 22 12 42 42 H 1.09009 * 109.46966 * 184.67952 * 24 22 12 43 43 H 1.08994 * 109.46864 * 304.67371 * 24 22 12 44 44 H 1.08999 * 109.47058 * 269.97439 * 26 25 2 45 45 H 1.09002 * 109.47258 * 29.97549 * 26 25 2 46 46 H 1.08996 * 109.46979 * 149.97737 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2029 -0.0058 5 6 4.2767 0.0100 0.0001 6 6 3.5861 -1.1952 0.0059 7 7 4.2872 -2.4039 0.0123 8 6 5.4652 -2.5032 -0.6350 9 8 5.9601 -1.5211 -1.1484 10 6 6.1613 -3.8217 -0.7207 11 8 5.6645 -4.8045 -0.2108 12 7 7.3414 -3.9201 -1.3643 13 6 7.8838 -2.7630 -2.0805 14 6 8.6181 -1.8718 -1.1121 15 1 8.6747 -2.1402 -0.0676 16 6 9.2176 -0.7137 -1.5597 17 7 9.1492 -0.3870 -2.8318 18 14 10.1284 0.3907 -0.3595 19 1 11.5524 -0.0242 -0.2879 20 1 10.0458 1.7992 -0.8225 21 1 9.5109 0.2749 0.9861 22 6 8.0817 -5.1842 -1.3476 23 6 8.3193 -5.6170 0.1005 24 6 7.2715 -6.2592 -2.0749 25 6 2.1966 -1.1963 0.0058 26 6 1.4431 -2.5013 0.0116 27 1 -0.3634 0.0049 1.0276 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3633 -0.8925 -0.5095 30 1 1.6560 2.1325 0.0004 31 1 4.1167 2.1404 -0.0103 32 1 5.3566 0.0143 0.0004 33 1 3.9260 -3.1715 0.4827 34 1 8.5721 -3.1042 -2.8537 35 1 7.0681 -2.2053 -2.5406 36 1 9.5707 0.4280 -3.1466 37 1 9.0403 -5.0505 -1.8489 38 1 7.3641 -5.8482 0.5720 39 1 8.9555 -6.5020 0.1155 40 1 8.8076 -4.8093 0.6457 41 1 7.1733 -5.9908 -3.1267 42 1 7.7827 -7.2184 -1.9909 43 1 6.2816 -6.3345 -1.6250 44 1 1.2614 -2.8114 1.0406 45 1 0.4907 -2.3733 -0.5028 46 1 2.0322 -3.2632 -0.4988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527104226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:46 Heat of formation + Delta-G solvation = -33.888625 kcal Electronic energy + Delta-G solvation = -27720.971726 eV Core-core repulsion = 23997.156574 eV Total energy + Delta-G solvation = -3723.815152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.66414 -39.44081 -37.87116 -35.85914 -34.51914 -33.24211 -32.96973 -31.37543 -30.61315 -27.45788 -26.96921 -26.75566 -26.25624 -24.70414 -22.77041 -22.04559 -20.97386 -20.32999 -18.94054 -17.18610 -16.61204 -16.53674 -15.81666 -15.61617 -15.22940 -15.13026 -14.63763 -14.35454 -14.22726 -13.94170 -13.45971 -13.37309 -13.11447 -12.88852 -12.84315 -12.70797 -12.50335 -12.24514 -12.00096 -11.84581 -11.72541 -11.58281 -11.52252 -11.19970 -10.99826 -10.93873 -10.89012 -10.77671 -10.70946 -10.23199 -9.95700 -9.74527 -9.63373 -8.63745 -8.38993 -8.22931 -7.90492 -7.73941 -6.02030 -4.03790 1.42420 1.57589 2.21783 2.94431 3.30179 3.37123 3.40552 3.80035 4.05862 4.11336 4.46078 4.85191 4.95489 4.99157 5.10459 5.19746 5.34471 5.40006 5.45563 5.48397 5.57226 5.62622 5.65664 5.72059 5.80540 5.84278 5.91262 5.98995 6.03271 6.07029 6.24610 6.30382 6.32385 6.51775 6.59813 6.67404 6.68679 6.76600 6.79292 6.81716 7.27983 7.38958 7.44747 7.62189 7.86731 8.11761 8.20041 8.39679 8.71002 8.96253 9.58451 11.06900 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.005165 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.654870 B = 5419.518239 C = 7453.905458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.102 4.102 5 C -0.123 4.123 6 C 0.159 3.841 7 N -0.661 5.661 8 C 0.485 3.515 9 O -0.428 6.428 10 C 0.510 3.490 11 O -0.557 6.557 12 N -0.555 5.555 13 C 0.228 3.772 14 C -0.511 4.511 15 H 0.053 0.947 16 C 0.070 3.930 17 N -0.890 5.890 18 Si 0.891 3.109 19 H -0.282 1.282 20 H -0.286 1.286 21 H -0.276 1.276 22 C 0.143 3.857 23 C -0.166 4.166 24 C -0.166 4.166 25 C -0.118 4.118 26 C -0.116 4.116 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.148 0.852 33 H 0.414 0.586 34 H 0.032 0.968 35 H 0.065 0.935 36 H 0.262 0.738 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.271 -3.715 4.816 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.077 4.077 3 C -0.158 4.158 4 C -0.120 4.120 5 C -0.143 4.143 6 C 0.064 3.936 7 N -0.309 5.309 8 C 0.266 3.734 9 O -0.295 6.295 10 C 0.293 3.707 11 O -0.439 6.439 12 N -0.285 5.285 13 C 0.110 3.890 14 C -0.550 4.550 15 H 0.071 0.929 16 C -0.133 4.133 17 N -0.529 5.529 18 Si 0.719 3.281 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.040 3.960 23 C -0.224 4.224 24 C -0.224 4.224 25 C -0.121 4.121 26 C -0.173 4.173 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.165 0.835 33 H 0.251 0.749 34 H 0.050 0.950 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.969 -3.410 4.481 14.139 hybrid contribution 0.620 0.532 0.790 1.136 sum -12.349 -2.878 5.270 13.732 Atomic orbital electron populations 1.20809 0.91418 1.02622 1.02044 1.19452 0.95554 0.92102 1.00569 1.20926 0.94245 0.97101 1.03534 1.21029 0.93917 0.97879 0.99218 1.21516 1.02081 0.90627 1.00073 1.17571 0.89994 0.85767 1.00246 1.43227 1.21597 1.12805 1.53303 1.20528 0.81460 0.90923 0.80473 1.90976 1.61113 1.37206 1.40235 1.19693 0.82669 0.87938 0.80430 1.90587 1.66470 1.37921 1.48890 1.48385 1.18012 1.13933 1.48164 1.19971 0.95859 0.81205 0.92007 1.21172 1.32957 1.06357 0.94514 0.92856 1.24788 0.96265 0.97178 0.95026 1.69914 1.44329 1.24979 1.13686 0.86613 0.79903 0.80132 0.81426 1.20793 1.21151 1.20061 1.21046 0.95067 0.83124 0.96762 1.22163 1.02720 1.00958 0.96523 1.22201 1.02172 0.97872 1.00198 1.19459 0.91534 0.95577 1.05488 1.20779 1.00125 0.94219 1.02153 0.91402 0.91775 0.91323 0.86436 0.85900 0.83464 0.74886 0.95049 0.91761 0.92877 0.89159 0.90767 0.92488 0.92317 0.92934 0.92271 0.90762 0.91323 0.90999 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.60 36.01 0.35 -0.68 16 2 C -0.08 -0.96 5.88 -104.65 -0.62 -1.58 16 3 C -0.14 -1.82 9.70 -39.54 -0.38 -2.20 16 4 C -0.10 -1.54 10.04 -39.61 -0.40 -1.94 16 5 C -0.12 -2.19 8.71 -39.38 -0.34 -2.53 16 6 C 0.16 2.64 6.30 -83.75 -0.53 2.11 16 7 N -0.66 -11.18 4.76 -10.30 -0.05 -11.23 16 8 C 0.48 9.92 7.58 -11.63 -0.09 9.83 16 9 O -0.43 -10.16 9.46 5.48 0.05 -10.11 16 10 C 0.51 10.43 7.08 -11.63 -0.08 10.35 16 11 O -0.56 -10.94 12.76 5.49 0.07 -10.87 16 12 N -0.55 -11.66 2.42 -168.02 -0.41 -12.06 16 13 C 0.23 5.65 4.75 -5.20 -0.02 5.62 16 14 C -0.51 -13.76 7.78 -34.44 -0.27 -14.03 16 15 H 0.05 1.46 7.81 -52.49 -0.41 1.05 16 16 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 17 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.14 2.55 3.26 -67.93 -0.22 2.33 16 23 C -0.17 -2.73 8.95 37.16 0.33 -2.40 16 24 C -0.17 -2.57 9.24 37.16 0.34 -2.22 16 25 C -0.12 -1.63 5.90 -104.42 -0.62 -2.24 16 26 C -0.12 -1.26 9.06 36.00 0.33 -0.93 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.07 0.57 5.94 -51.93 -0.31 0.26 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.15 3.05 6.11 -52.49 -0.32 2.73 16 33 H 0.41 6.10 7.28 -40.82 -0.30 5.81 16 34 H 0.03 0.80 7.83 -51.93 -0.41 0.40 16 35 H 0.06 1.74 5.84 -51.93 -0.30 1.44 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.09 1.59 7.75 -51.93 -0.40 1.19 16 38 H 0.07 1.28 6.23 -51.93 -0.32 0.96 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.07 1.24 6.22 -51.93 -0.32 0.92 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.66 5.94 -51.93 -0.31 0.35 16 46 H 0.07 0.75 7.16 -51.93 -0.37 0.38 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -30.22 368.31 -8.10 -38.32 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.71 Total: 7.49 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -2.32 Total: 1.31 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: 0.28 Total: -48.25 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: 0.12 Total: -20.98 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.22 -8.10 -38.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527104226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.435 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds