Wall clock time and date at job start Tue Mar 31 2020 13:09:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.38320 * 119.96311 * 2 1
4 4 C 1.38264 * 120.15246 * 180.27597 * 3 2 1
5 5 C 1.38122 * 120.07819 * 359.44423 * 4 3 2
6 6 C 1.38906 * 119.91902 * 0.27751 * 5 4 3
7 7 N 1.39731 * 120.07449 * 180.02562 * 6 5 4
8 8 C 1.34780 * 119.99984 * 326.25779 * 7 6 5
9 9 O 1.21371 * 119.99851 * 4.86898 * 8 7 6
10 10 C 1.49348 * 119.99848 * 184.87204 * 8 7 6
11 11 O 1.21358 * 120.00097 * 0.21799 * 10 8 7
12 12 N 1.34780 * 119.99975 * 180.21362 * 10 8 7
13 13 C 1.46495 * 119.99722 * 354.60381 * 12 10 8
14 14 C 1.50700 * 109.47249 * 83.66444 * 13 12 10
15 15 H 1.07994 * 120.00244 * 359.97438 * 14 13 12
16 16 C 1.37878 * 119.99874 * 179.97438 * 14 13 12
17 17 N 1.31515 * 120.00081 * 359.97438 * 16 14 13
18 18 Si 1.86806 * 119.99933 * 180.02562 * 16 14 13
19 19 H 1.48493 * 109.47242 * 89.99865 * 18 16 14
20 20 H 1.48501 * 109.46965 * 210.00064 * 18 16 14
21 21 H 1.48501 * 109.46968 * 330.00035 * 18 16 14
22 22 C 1.46497 * 119.99947 * 174.60208 * 12 10 8
23 23 C 1.53000 * 109.47148 * 304.45980 * 22 12 10
24 24 C 1.53001 * 109.47005 * 64.46260 * 22 12 10
25 25 C 1.38080 * 119.96144 * 179.72085 * 2 1 3
26 26 C 1.50697 * 120.03801 * 0.02562 * 25 2 1
27 27 H 1.08996 * 109.47508 * 270.27554 * 1 2 3
28 28 H 1.09001 * 109.47312 * 30.27856 * 1 2 3
29 29 H 1.09007 * 109.46869 * 150.27850 * 1 2 3
30 30 H 1.07999 * 119.92149 * 0.02562 * 3 2 1
31 31 H 1.08001 * 119.96063 * 179.71904 * 4 3 2
32 32 H 1.07996 * 120.04192 * 180.29675 * 5 4 3
33 33 H 0.96995 * 119.99801 * 146.25547 * 7 6 5
34 34 H 1.08999 * 109.46885 * 203.66221 * 13 12 10
35 35 H 1.09006 * 109.47475 * 323.66137 * 13 12 10
36 36 H 0.97006 * 119.99876 * 179.97438 * 17 16 14
37 37 H 1.09001 * 109.46920 * 184.46147 * 22 12 10
38 38 H 1.09003 * 109.46997 * 65.68928 * 23 22 12
39 39 H 1.08999 * 109.47037 * 185.68300 * 23 22 12
40 40 H 1.08997 * 109.47376 * 305.68534 * 23 22 12
41 41 H 1.08998 * 109.47232 * 64.68075 * 24 22 12
42 42 H 1.09009 * 109.46966 * 184.67952 * 24 22 12
43 43 H 1.08994 * 109.46864 * 304.67371 * 24 22 12
44 44 H 1.08999 * 109.47058 * 269.97439 * 26 25 2
45 45 H 1.09002 * 109.47258 * 29.97549 * 26 25 2
46 46 H 1.08996 * 109.46979 * 149.97737 * 26 25 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1978 1.1983 0.0000
4 6 3.5804 1.2029 -0.0058
5 6 4.2767 0.0100 0.0001
6 6 3.5861 -1.1952 0.0059
7 7 4.2872 -2.4039 0.0123
8 6 5.4652 -2.5032 -0.6350
9 8 5.9601 -1.5211 -1.1484
10 6 6.1613 -3.8217 -0.7207
11 8 5.6645 -4.8045 -0.2108
12 7 7.3414 -3.9201 -1.3643
13 6 7.8838 -2.7630 -2.0805
14 6 8.6181 -1.8718 -1.1121
15 1 8.6747 -2.1402 -0.0676
16 6 9.2176 -0.7137 -1.5597
17 7 9.1492 -0.3870 -2.8318
18 14 10.1284 0.3907 -0.3595
19 1 11.5524 -0.0242 -0.2879
20 1 10.0458 1.7992 -0.8225
21 1 9.5109 0.2749 0.9861
22 6 8.0817 -5.1842 -1.3476
23 6 8.3193 -5.6170 0.1005
24 6 7.2715 -6.2592 -2.0749
25 6 2.1966 -1.1963 0.0058
26 6 1.4431 -2.5013 0.0116
27 1 -0.3634 0.0049 1.0276
28 1 -0.3634 0.8875 -0.5181
29 1 -0.3633 -0.8925 -0.5095
30 1 1.6560 2.1325 0.0004
31 1 4.1167 2.1404 -0.0103
32 1 5.3566 0.0143 0.0004
33 1 3.9260 -3.1715 0.4827
34 1 8.5721 -3.1042 -2.8537
35 1 7.0681 -2.2053 -2.5406
36 1 9.5707 0.4280 -3.1466
37 1 9.0403 -5.0505 -1.8489
38 1 7.3641 -5.8482 0.5720
39 1 8.9555 -6.5020 0.1155
40 1 8.8076 -4.8093 0.6457
41 1 7.1733 -5.9908 -3.1267
42 1 7.7827 -7.2184 -1.9909
43 1 6.2816 -6.3345 -1.6250
44 1 1.2614 -2.8114 1.0406
45 1 0.4907 -2.3733 -0.5028
46 1 2.0322 -3.2632 -0.4988
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000527104226.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:09:44
Heat of formation + Delta-G solvation = -50.857752 kcal
Electronic energy + Delta-G solvation = -27721.707563 eV
Core-core repulsion = 23997.156574 eV
Total energy + Delta-G solvation = -3724.550989 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.15997 -40.80236 -39.32945 -37.48741 -35.90669 -34.94875 -34.27837 -33.08284
-31.74630 -29.02704 -28.42087 -28.05692 -27.24808 -26.24139 -24.69528 -23.45777
-22.12849 -21.64217 -20.40306 -18.84620 -18.54214 -17.99941 -17.29025 -16.86221
-16.82767 -16.60374 -16.21104 -16.00099 -15.53063 -15.20385 -14.85903 -14.60520
-14.54544 -14.35209 -14.02327 -13.93926 -13.67495 -13.59777 -13.45356 -13.29254
-12.92771 -12.83766 -12.77848 -12.73017 -12.66464 -12.51310 -12.22814 -12.20527
-12.14227 -11.87483 -11.67173 -11.43515 -11.20086 -10.59414 -10.06082 -9.60704
-9.46194 -9.04764 -8.14901 -6.22587 0.12629 0.43011 0.71195 1.35076
1.37034 1.44629 1.47684 2.24926 2.39155 2.62064 2.82374 3.18904
3.40921 3.88840 3.93155 4.01939 4.15757 4.21357 4.26150 4.33310
4.43874 4.51278 4.63779 4.74339 4.78951 4.79489 4.89511 4.90611
4.91781 4.97800 4.99411 5.04306 5.10665 5.19909 5.27026 5.35156
5.36532 5.40541 5.51283 5.59909 5.67487 5.70796 5.78721 6.09331
6.13363 6.17196 6.35046 6.80400 6.85109 7.12774 7.42943 8.93433
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.010902 B = 0.005165 C = 0.003756
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2567.654870 B = 5419.518239 C = 7453.905458
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.074 4.074
3 C -0.132 4.132
4 C -0.114 4.114
5 C -0.154 4.154
6 C 0.131 3.869
7 N -0.643 5.643
8 C 0.480 3.520
9 O -0.471 6.471
10 C 0.509 3.491
11 O -0.547 6.547
12 N -0.561 5.561
13 C 0.248 3.752
14 C -0.511 4.511
15 H 0.042 0.958
16 C 0.023 3.977
17 N -0.922 5.922
18 Si 0.948 3.052
19 H -0.268 1.268
20 H -0.283 1.283
21 H -0.279 1.279
22 C 0.131 3.869
23 C -0.156 4.156
24 C -0.155 4.155
25 C -0.115 4.115
26 C -0.115 4.115
27 H 0.085 0.915
28 H 0.078 0.922
29 H 0.080 0.920
30 H 0.150 0.850
31 H 0.130 0.870
32 H 0.106 0.894
33 H 0.424 0.576
34 H 0.019 0.981
35 H 0.039 0.961
36 H 0.262 0.738
37 H 0.089 0.911
38 H 0.065 0.935
39 H 0.091 0.909
40 H 0.037 0.963
41 H 0.049 0.951
42 H 0.091 0.909
43 H 0.061 0.939
44 H 0.088 0.912
45 H 0.095 0.905
46 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.505 -4.396 5.853 17.147
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.075 4.075
3 C -0.150 4.150
4 C -0.133 4.133
5 C -0.174 4.174
6 C 0.037 3.963
7 N -0.292 5.292
8 C 0.262 3.738
9 O -0.341 6.341
10 C 0.291 3.709
11 O -0.428 6.428
12 N -0.292 5.292
13 C 0.128 3.872
14 C -0.550 4.550
15 H 0.061 0.939
16 C -0.177 4.177
17 N -0.562 5.562
18 Si 0.774 3.226
19 H -0.194 1.194
20 H -0.209 1.209
21 H -0.204 1.204
22 C 0.029 3.971
23 C -0.214 4.214
24 C -0.213 4.213
25 C -0.118 4.118
26 C -0.172 4.172
27 H 0.104 0.896
28 H 0.097 0.903
29 H 0.099 0.901
30 H 0.168 0.832
31 H 0.148 0.852
32 H 0.124 0.876
33 H 0.263 0.737
34 H 0.037 0.963
35 H 0.056 0.944
36 H 0.071 0.929
37 H 0.108 0.892
38 H 0.084 0.916
39 H 0.110 0.890
40 H 0.057 0.943
41 H 0.069 0.931
42 H 0.110 0.890
43 H 0.080 0.920
44 H 0.106 0.894
45 H 0.113 0.887
46 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -15.238 -4.134 5.554 16.737
hybrid contribution 1.174 0.735 0.506 1.475
sum -14.064 -3.399 6.060 15.687
Atomic orbital electron populations
1.20902 0.88144 1.04030 1.03569 1.19983 0.97816 0.91253 0.98434
1.21312 0.93227 0.98914 1.01573 1.21189 0.95298 0.97156 0.99652
1.21331 1.00414 0.92678 1.02979 1.17794 0.91327 0.84870 1.02332
1.43040 1.20435 1.13528 1.52177 1.20678 0.82253 0.90485 0.80409
1.90972 1.62484 1.38245 1.42406 1.19743 0.82616 0.88130 0.80389
1.90577 1.66177 1.37583 1.48451 1.48339 1.18487 1.14152 1.48176
1.19446 0.94335 0.81975 0.91465 1.21310 1.32680 1.06803 0.94187
0.93923 1.25494 0.97219 0.98488 0.96463 1.70017 1.45480 1.25523
1.15188 0.85714 0.79239 0.78457 0.79156 1.19361 1.20880 1.20377
1.21381 0.95235 0.82381 0.98144 1.22086 1.02707 1.01578 0.95002
1.22107 1.01338 0.98405 0.99437 1.19833 0.90265 0.97737 1.03941
1.20870 1.00498 0.92178 1.03615 0.89611 0.90288 0.90098 0.83209
0.85192 0.87573 0.73701 0.96270 0.94362 0.92858 0.89238 0.91580
0.89007 0.94342 0.93138 0.88977 0.91986 0.89364 0.88658 0.92522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.52 9.60 71.24 0.68 -0.83 16
2 C -0.07 -1.68 5.88 -19.88 -0.12 -1.79 16
3 C -0.13 -3.18 9.70 22.30 0.22 -2.97 16
4 C -0.11 -3.52 10.04 22.25 0.22 -3.30 16
5 C -0.15 -5.83 8.71 22.40 0.20 -5.63 16
6 C 0.13 4.45 6.30 38.21 0.24 4.69 16
7 N -0.64 -22.50 4.76 -304.84 -1.45 -23.95 16
8 C 0.48 20.70 7.58 87.24 0.66 21.36 16
9 O -0.47 -24.00 9.46 -3.31 -0.03 -24.04 16
10 C 0.51 21.41 7.08 87.24 0.62 22.02 16
11 O -0.55 -21.44 12.76 -3.27 -0.04 -21.48 16
12 N -0.56 -24.31 2.42 -803.84 -1.95 -26.26 16
13 C 0.25 12.89 4.75 85.63 0.41 13.30 16
14 C -0.51 -28.67 7.78 25.60 0.20 -28.47 16
15 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16
16 C 0.02 1.29 5.46 84.65 0.46 1.75 16
17 N -0.92 -55.11 13.29 21.45 0.28 -54.82 16
18 Si 0.95 45.51 29.54 68.60 2.03 47.53 16
19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
20 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16
21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16
22 C 0.13 4.61 3.26 44.99 0.15 4.76 16
23 C -0.16 -4.99 8.95 71.98 0.64 -4.35 16
24 C -0.16 -4.57 9.24 71.98 0.66 -3.90 16
25 C -0.12 -3.02 5.90 -19.73 -0.12 -3.13 16
26 C -0.12 -2.19 9.06 71.24 0.65 -1.55 16
27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16
28 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16
29 H 0.08 0.95 5.94 -2.38 -0.01 0.94 16
30 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16
31 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16
32 H 0.11 4.87 6.11 -2.91 -0.02 4.85 16
33 H 0.42 12.59 7.28 -92.71 -0.68 11.91 16
34 H 0.02 1.04 7.83 -2.39 -0.02 1.02 16
35 H 0.04 2.22 5.84 -2.38 -0.01 2.20 16
36 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16
37 H 0.09 3.15 7.75 -2.39 -0.02 3.14 16
38 H 0.07 2.22 6.23 -2.39 -0.01 2.20 16
39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16
40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16
41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16
42 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16
43 H 0.06 1.99 6.22 -2.39 -0.01 1.97 16
44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
45 H 0.09 1.38 5.94 -2.39 -0.01 1.36 16
46 H 0.06 1.20 7.16 -2.39 -0.02 1.18 16
Total: -1.00 -69.00 368.31 4.94 -64.06
By element:
Atomic # 1 Polarization: 26.68 SS G_CDS: 0.33 Total: 27.00 kcal
Atomic # 6 Polarization: 6.18 SS G_CDS: 5.77 Total: 11.95 kcal
Atomic # 7 Polarization: -101.92 SS G_CDS: -3.11 Total: -105.03 kcal
Atomic # 8 Polarization: -45.45 SS G_CDS: -0.07 Total: -45.52 kcal
Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal
Total: -69.00 4.94 -64.06 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000527104226.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.207 kcal
(2) G-P(sol) polarization free energy of solvation -69.004 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.797 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.858 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds