Wall clock time and date at job start Tue Mar 31 2020 13:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38320 * 119.96311 * 2 1 4 4 C 1.38264 * 120.15246 * 180.27597 * 3 2 1 5 5 C 1.38122 * 120.07819 * 359.44423 * 4 3 2 6 6 C 1.38906 * 119.91902 * 0.27751 * 5 4 3 7 7 N 1.39731 * 120.07449 * 180.02562 * 6 5 4 8 8 C 1.34780 * 119.99984 * 326.25779 * 7 6 5 9 9 O 1.21371 * 119.99851 * 4.86898 * 8 7 6 10 10 C 1.49348 * 119.99848 * 184.87204 * 8 7 6 11 11 O 1.21358 * 120.00097 * 0.21799 * 10 8 7 12 12 N 1.34780 * 119.99975 * 180.21362 * 10 8 7 13 13 C 1.46495 * 119.99722 * 354.60381 * 12 10 8 14 14 C 1.50700 * 109.47249 * 83.66444 * 13 12 10 15 15 H 1.07994 * 120.00244 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99874 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00081 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99933 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47242 * 89.99865 * 18 16 14 20 20 H 1.48501 * 109.46965 * 210.00064 * 18 16 14 21 21 H 1.48501 * 109.46968 * 330.00035 * 18 16 14 22 22 C 1.46497 * 119.99947 * 174.60208 * 12 10 8 23 23 C 1.53000 * 109.47148 * 304.45980 * 22 12 10 24 24 C 1.53001 * 109.47005 * 64.46260 * 22 12 10 25 25 C 1.38080 * 119.96144 * 179.72085 * 2 1 3 26 26 C 1.50697 * 120.03801 * 0.02562 * 25 2 1 27 27 H 1.08996 * 109.47508 * 270.27554 * 1 2 3 28 28 H 1.09001 * 109.47312 * 30.27856 * 1 2 3 29 29 H 1.09007 * 109.46869 * 150.27850 * 1 2 3 30 30 H 1.07999 * 119.92149 * 0.02562 * 3 2 1 31 31 H 1.08001 * 119.96063 * 179.71904 * 4 3 2 32 32 H 1.07996 * 120.04192 * 180.29675 * 5 4 3 33 33 H 0.96995 * 119.99801 * 146.25547 * 7 6 5 34 34 H 1.08999 * 109.46885 * 203.66221 * 13 12 10 35 35 H 1.09006 * 109.47475 * 323.66137 * 13 12 10 36 36 H 0.97006 * 119.99876 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.46920 * 184.46147 * 22 12 10 38 38 H 1.09003 * 109.46997 * 65.68928 * 23 22 12 39 39 H 1.08999 * 109.47037 * 185.68300 * 23 22 12 40 40 H 1.08997 * 109.47376 * 305.68534 * 23 22 12 41 41 H 1.08998 * 109.47232 * 64.68075 * 24 22 12 42 42 H 1.09009 * 109.46966 * 184.67952 * 24 22 12 43 43 H 1.08994 * 109.46864 * 304.67371 * 24 22 12 44 44 H 1.08999 * 109.47058 * 269.97439 * 26 25 2 45 45 H 1.09002 * 109.47258 * 29.97549 * 26 25 2 46 46 H 1.08996 * 109.46979 * 149.97737 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5804 1.2029 -0.0058 5 6 4.2767 0.0100 0.0001 6 6 3.5861 -1.1952 0.0059 7 7 4.2872 -2.4039 0.0123 8 6 5.4652 -2.5032 -0.6350 9 8 5.9601 -1.5211 -1.1484 10 6 6.1613 -3.8217 -0.7207 11 8 5.6645 -4.8045 -0.2108 12 7 7.3414 -3.9201 -1.3643 13 6 7.8838 -2.7630 -2.0805 14 6 8.6181 -1.8718 -1.1121 15 1 8.6747 -2.1402 -0.0676 16 6 9.2176 -0.7137 -1.5597 17 7 9.1492 -0.3870 -2.8318 18 14 10.1284 0.3907 -0.3595 19 1 11.5524 -0.0242 -0.2879 20 1 10.0458 1.7992 -0.8225 21 1 9.5109 0.2749 0.9861 22 6 8.0817 -5.1842 -1.3476 23 6 8.3193 -5.6170 0.1005 24 6 7.2715 -6.2592 -2.0749 25 6 2.1966 -1.1963 0.0058 26 6 1.4431 -2.5013 0.0116 27 1 -0.3634 0.0049 1.0276 28 1 -0.3634 0.8875 -0.5181 29 1 -0.3633 -0.8925 -0.5095 30 1 1.6560 2.1325 0.0004 31 1 4.1167 2.1404 -0.0103 32 1 5.3566 0.0143 0.0004 33 1 3.9260 -3.1715 0.4827 34 1 8.5721 -3.1042 -2.8537 35 1 7.0681 -2.2053 -2.5406 36 1 9.5707 0.4280 -3.1466 37 1 9.0403 -5.0505 -1.8489 38 1 7.3641 -5.8482 0.5720 39 1 8.9555 -6.5020 0.1155 40 1 8.8076 -4.8093 0.6457 41 1 7.1733 -5.9908 -3.1267 42 1 7.7827 -7.2184 -1.9909 43 1 6.2816 -6.3345 -1.6250 44 1 1.2614 -2.8114 1.0406 45 1 0.4907 -2.3733 -0.5028 46 1 2.0322 -3.2632 -0.4988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000527104226.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:44 Heat of formation + Delta-G solvation = -50.857752 kcal Electronic energy + Delta-G solvation = -27721.707563 eV Core-core repulsion = 23997.156574 eV Total energy + Delta-G solvation = -3724.550989 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15997 -40.80236 -39.32945 -37.48741 -35.90669 -34.94875 -34.27837 -33.08284 -31.74630 -29.02704 -28.42087 -28.05692 -27.24808 -26.24139 -24.69528 -23.45777 -22.12849 -21.64217 -20.40306 -18.84620 -18.54214 -17.99941 -17.29025 -16.86221 -16.82767 -16.60374 -16.21104 -16.00099 -15.53063 -15.20385 -14.85903 -14.60520 -14.54544 -14.35209 -14.02327 -13.93926 -13.67495 -13.59777 -13.45356 -13.29254 -12.92771 -12.83766 -12.77848 -12.73017 -12.66464 -12.51310 -12.22814 -12.20527 -12.14227 -11.87483 -11.67173 -11.43515 -11.20086 -10.59414 -10.06082 -9.60704 -9.46194 -9.04764 -8.14901 -6.22587 0.12629 0.43011 0.71195 1.35076 1.37034 1.44629 1.47684 2.24926 2.39155 2.62064 2.82374 3.18904 3.40921 3.88840 3.93155 4.01939 4.15757 4.21357 4.26150 4.33310 4.43874 4.51278 4.63779 4.74339 4.78951 4.79489 4.89511 4.90611 4.91781 4.97800 4.99411 5.04306 5.10665 5.19909 5.27026 5.35156 5.36532 5.40541 5.51283 5.59909 5.67487 5.70796 5.78721 6.09331 6.13363 6.17196 6.35046 6.80400 6.85109 7.12774 7.42943 8.93433 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010902 B = 0.005165 C = 0.003756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.654870 B = 5419.518239 C = 7453.905458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.074 4.074 3 C -0.132 4.132 4 C -0.114 4.114 5 C -0.154 4.154 6 C 0.131 3.869 7 N -0.643 5.643 8 C 0.480 3.520 9 O -0.471 6.471 10 C 0.509 3.491 11 O -0.547 6.547 12 N -0.561 5.561 13 C 0.248 3.752 14 C -0.511 4.511 15 H 0.042 0.958 16 C 0.023 3.977 17 N -0.922 5.922 18 Si 0.948 3.052 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.279 1.279 22 C 0.131 3.869 23 C -0.156 4.156 24 C -0.155 4.155 25 C -0.115 4.115 26 C -0.115 4.115 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.130 0.870 32 H 0.106 0.894 33 H 0.424 0.576 34 H 0.019 0.981 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.505 -4.396 5.853 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.075 4.075 3 C -0.150 4.150 4 C -0.133 4.133 5 C -0.174 4.174 6 C 0.037 3.963 7 N -0.292 5.292 8 C 0.262 3.738 9 O -0.341 6.341 10 C 0.291 3.709 11 O -0.428 6.428 12 N -0.292 5.292 13 C 0.128 3.872 14 C -0.550 4.550 15 H 0.061 0.939 16 C -0.177 4.177 17 N -0.562 5.562 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.204 1.204 22 C 0.029 3.971 23 C -0.214 4.214 24 C -0.213 4.213 25 C -0.118 4.118 26 C -0.172 4.172 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.168 0.832 31 H 0.148 0.852 32 H 0.124 0.876 33 H 0.263 0.737 34 H 0.037 0.963 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.238 -4.134 5.554 16.737 hybrid contribution 1.174 0.735 0.506 1.475 sum -14.064 -3.399 6.060 15.687 Atomic orbital electron populations 1.20902 0.88144 1.04030 1.03569 1.19983 0.97816 0.91253 0.98434 1.21312 0.93227 0.98914 1.01573 1.21189 0.95298 0.97156 0.99652 1.21331 1.00414 0.92678 1.02979 1.17794 0.91327 0.84870 1.02332 1.43040 1.20435 1.13528 1.52177 1.20678 0.82253 0.90485 0.80409 1.90972 1.62484 1.38245 1.42406 1.19743 0.82616 0.88130 0.80389 1.90577 1.66177 1.37583 1.48451 1.48339 1.18487 1.14152 1.48176 1.19446 0.94335 0.81975 0.91465 1.21310 1.32680 1.06803 0.94187 0.93923 1.25494 0.97219 0.98488 0.96463 1.70017 1.45480 1.25523 1.15188 0.85714 0.79239 0.78457 0.79156 1.19361 1.20880 1.20377 1.21381 0.95235 0.82381 0.98144 1.22086 1.02707 1.01578 0.95002 1.22107 1.01338 0.98405 0.99437 1.19833 0.90265 0.97737 1.03941 1.20870 1.00498 0.92178 1.03615 0.89611 0.90288 0.90098 0.83209 0.85192 0.87573 0.73701 0.96270 0.94362 0.92858 0.89238 0.91580 0.89007 0.94342 0.93138 0.88977 0.91986 0.89364 0.88658 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 9.60 71.24 0.68 -0.83 16 2 C -0.07 -1.68 5.88 -19.88 -0.12 -1.79 16 3 C -0.13 -3.18 9.70 22.30 0.22 -2.97 16 4 C -0.11 -3.52 10.04 22.25 0.22 -3.30 16 5 C -0.15 -5.83 8.71 22.40 0.20 -5.63 16 6 C 0.13 4.45 6.30 38.21 0.24 4.69 16 7 N -0.64 -22.50 4.76 -304.84 -1.45 -23.95 16 8 C 0.48 20.70 7.58 87.24 0.66 21.36 16 9 O -0.47 -24.00 9.46 -3.31 -0.03 -24.04 16 10 C 0.51 21.41 7.08 87.24 0.62 22.02 16 11 O -0.55 -21.44 12.76 -3.27 -0.04 -21.48 16 12 N -0.56 -24.31 2.42 -803.84 -1.95 -26.26 16 13 C 0.25 12.89 4.75 85.63 0.41 13.30 16 14 C -0.51 -28.67 7.78 25.60 0.20 -28.47 16 15 H 0.04 2.43 7.81 -2.91 -0.02 2.41 16 16 C 0.02 1.29 5.46 84.65 0.46 1.75 16 17 N -0.92 -55.11 13.29 21.45 0.28 -54.82 16 18 Si 0.95 45.51 29.54 68.60 2.03 47.53 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 21 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 22 C 0.13 4.61 3.26 44.99 0.15 4.76 16 23 C -0.16 -4.99 8.95 71.98 0.64 -4.35 16 24 C -0.16 -4.57 9.24 71.98 0.66 -3.90 16 25 C -0.12 -3.02 5.90 -19.73 -0.12 -3.13 16 26 C -0.12 -2.19 9.06 71.24 0.65 -1.55 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.90 8.09 -2.39 -0.02 0.88 16 29 H 0.08 0.95 5.94 -2.38 -0.01 0.94 16 30 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 31 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 32 H 0.11 4.87 6.11 -2.91 -0.02 4.85 16 33 H 0.42 12.59 7.28 -92.71 -0.68 11.91 16 34 H 0.02 1.04 7.83 -2.39 -0.02 1.02 16 35 H 0.04 2.22 5.84 -2.38 -0.01 2.20 16 36 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 37 H 0.09 3.15 7.75 -2.39 -0.02 3.14 16 38 H 0.07 2.22 6.23 -2.39 -0.01 2.20 16 39 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 43 H 0.06 1.99 6.22 -2.39 -0.01 1.97 16 44 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.09 1.38 5.94 -2.39 -0.01 1.36 16 46 H 0.06 1.20 7.16 -2.39 -0.02 1.18 16 Total: -1.00 -69.00 368.31 4.94 -64.06 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: 0.33 Total: 27.00 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.77 Total: 11.95 kcal Atomic # 7 Polarization: -101.92 SS G_CDS: -3.11 Total: -105.03 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -0.07 Total: -45.52 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.00 4.94 -64.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527104226.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.207 kcal (2) G-P(sol) polarization free energy of solvation -69.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds