Wall clock time and date at job start Tue Mar 31 2020 12:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 110.67120 * 2 1 4 4 C 1.54705 * 110.75609 * 123.22970 * 2 1 3 5 5 C 1.51663 * 101.95079 * 93.10823 * 4 2 1 6 6 C 1.37891 * 132.10584 * 195.61187 * 5 4 2 7 7 C 1.38331 * 120.10261 * 178.85471 * 6 5 4 8 8 C 1.38240 * 119.82824 * 0.50060 * 7 6 5 9 9 C 1.38482 * 120.27059 * 359.68727 * 8 7 6 10 10 N 1.40164 * 119.94271 * 180.27098 * 9 8 7 11 11 C 1.34772 * 120.00136 * 24.82729 * 10 9 8 12 12 O 1.21597 * 120.00082 * 5.63103 * 11 10 9 13 13 N 1.34776 * 120.00356 * 185.62753 * 11 10 9 14 14 C 1.46501 * 120.00077 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47055 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.47380 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47143 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99977 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99666 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99501 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00302 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47279 * 89.99955 * 21 19 17 23 23 H 1.48499 * 109.47361 * 209.99740 * 21 19 17 24 24 H 1.48496 * 109.47124 * 330.00171 * 21 19 17 25 25 C 1.38675 * 107.06359 * 15.14059 * 5 4 2 26 26 O 1.36219 * 111.25811 * 1.42574 * 25 5 4 27 27 H 1.09005 * 109.47319 * 296.76790 * 1 2 3 28 28 H 1.08998 * 109.47380 * 56.77176 * 1 2 3 29 29 H 1.09003 * 109.46819 * 176.76774 * 1 2 3 30 30 H 1.09009 * 109.47229 * 183.23246 * 3 2 1 31 31 H 1.09004 * 109.47253 * 303.23178 * 3 2 1 32 32 H 1.08997 * 109.47342 * 63.23158 * 3 2 1 33 33 H 1.08996 * 110.93925 * 334.94464 * 4 2 1 34 34 H 1.09003 * 110.93783 * 211.26692 * 4 2 1 35 35 H 1.08000 * 119.94531 * 359.12668 * 6 5 4 36 36 H 1.08002 * 120.08119 * 180.27935 * 7 6 5 37 37 H 1.08000 * 119.86513 * 179.97438 * 8 7 6 38 38 H 0.96998 * 119.99985 * 204.82284 * 10 9 8 39 39 H 0.97000 * 119.99849 * 0.02562 * 13 11 10 40 40 H 1.08999 * 109.46808 * 300.00009 * 14 13 11 41 41 H 1.08999 * 109.47264 * 60.00513 * 14 13 11 42 42 H 1.09002 * 109.46647 * 299.99901 * 15 14 13 43 43 H 1.08996 * 109.47673 * 59.99406 * 15 14 13 44 44 H 1.08999 * 109.46475 * 299.99462 * 16 15 14 45 45 H 1.09004 * 109.47184 * 59.99275 * 16 15 14 46 46 H 0.97010 * 119.99785 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0782 -0.7928 1.2101 5 6 2.2647 -2.1774 0.6200 6 6 2.4526 -3.4130 1.2025 7 6 2.5745 -4.5415 0.4117 8 6 2.5178 -4.4260 -0.9647 9 6 2.3331 -3.1866 -1.5542 10 7 2.2710 -3.0782 -2.9503 11 6 1.8916 -4.1375 -3.6922 12 8 1.5052 -5.1539 -3.1480 13 7 1.9403 -4.0702 -5.0374 14 6 1.5273 -5.2214 -5.8439 15 6 1.6791 -4.8848 -7.3286 16 6 1.2472 -6.0868 -8.1709 17 6 1.3962 -5.7549 -9.6333 18 1 1.7619 -4.7837 -9.9321 19 6 1.0656 -6.6913 -10.5898 20 7 1.1951 -6.4015 -11.8661 21 14 0.4337 -8.3715 -10.0730 22 1 -1.0464 -8.3301 -9.9587 23 1 0.8236 -9.3812 -11.0897 24 1 1.0214 -8.7388 -8.7597 25 6 2.2079 -2.0430 -0.7591 26 8 2.0396 -0.7409 -1.1219 27 1 -0.3634 0.4629 0.9176 28 1 -0.3634 0.5631 -0.8596 29 1 -0.3633 -1.0261 -0.0579 30 1 3.1584 1.4093 -0.0580 31 1 1.6714 1.9703 -0.8596 32 1 1.7653 1.9349 0.9175 33 1 1.3539 -0.8108 2.0244 34 1 3.0300 -0.3814 1.5464 35 1 2.5004 -3.5004 2.2779 36 1 2.7172 -5.5097 0.8685 37 1 2.6133 -5.3066 -1.5826 38 1 2.5010 -2.2409 -3.3824 39 1 2.2488 -3.2595 -5.4716 40 1 2.1541 -6.0792 -5.6002 41 1 0.4855 -5.4600 -5.6298 42 1 1.0526 -4.0268 -7.5725 43 1 2.7209 -4.6463 -7.5425 44 1 1.8735 -6.9449 -7.9271 45 1 0.2052 -6.3248 -7.9569 46 1 0.9621 -7.0602 -12.5391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530397509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:30 Heat of formation + Delta-G solvation = -67.054506 kcal Electronic energy + Delta-G solvation = -25841.127488 eV Core-core repulsion = 22115.874155 eV Total energy + Delta-G solvation = -3725.253333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.48249 -41.32607 -38.70230 -37.09894 -35.97103 -35.19793 -34.49214 -33.31795 -32.10511 -30.30185 -28.64964 -28.37224 -27.52179 -24.93562 -23.43911 -23.14743 -22.27937 -21.65721 -21.38854 -19.62352 -19.01212 -18.32532 -17.98220 -17.11399 -16.77893 -16.71477 -16.36144 -16.09426 -15.74340 -15.70265 -15.33084 -14.91355 -14.77363 -14.67341 -14.10876 -13.91413 -13.79135 -13.70241 -13.52601 -13.19914 -12.92156 -12.89922 -12.74564 -12.71771 -12.59547 -12.49696 -11.91899 -11.85333 -11.77573 -11.75935 -11.60480 -11.50952 -11.33416 -11.04750 -10.76226 -10.19268 -9.36578 -8.78886 -8.29477 -6.33368 0.27974 0.32983 1.37242 1.38765 1.48794 1.50859 1.95818 2.16311 2.36478 2.79242 3.06278 3.09730 3.43850 3.53719 3.86153 4.00491 4.04909 4.06730 4.19145 4.20367 4.35329 4.44846 4.49375 4.63081 4.67184 4.71024 4.75980 4.85360 4.87374 4.88778 4.93330 5.01645 5.02482 5.09992 5.18548 5.27643 5.30870 5.35016 5.47888 5.51109 5.55573 5.57467 5.64740 5.75107 5.86836 6.24420 6.27270 6.74539 6.87379 7.31335 7.36889 8.86892 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.002177 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.150388 B =12860.788800 C =13667.399697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.092 3.908 3 C -0.137 4.137 4 C -0.093 4.093 5 C -0.157 4.157 6 C -0.091 4.091 7 C -0.126 4.126 8 C -0.125 4.125 9 C 0.135 3.865 10 N -0.673 5.673 11 C 0.700 3.300 12 O -0.611 6.611 13 N -0.725 5.725 14 C 0.146 3.854 15 C -0.100 4.100 16 C -0.012 4.012 17 C -0.530 4.530 18 H 0.037 0.963 19 C 0.003 3.997 20 N -0.950 5.950 21 Si 0.948 3.052 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.247 1.247 25 C 0.059 3.941 26 O -0.316 6.316 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.155 0.845 36 H 0.150 0.850 37 H 0.134 0.866 38 H 0.419 0.581 39 H 0.412 0.588 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.023 0.977 45 H 0.021 0.979 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.540 15.185 33.535 36.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 C -0.194 4.194 4 C -0.129 4.129 5 C -0.159 4.159 6 C -0.110 4.110 7 C -0.145 4.145 8 C -0.145 4.145 9 C 0.040 3.960 10 N -0.320 5.320 11 C 0.400 3.600 12 O -0.491 6.491 13 N -0.381 5.381 14 C 0.022 3.978 15 C -0.138 4.138 16 C -0.050 4.050 17 C -0.568 4.568 18 H 0.055 0.945 19 C -0.194 4.194 20 N -0.591 5.591 21 Si 0.771 3.229 22 H -0.193 1.193 23 H -0.210 1.210 24 H -0.170 1.170 25 C 0.011 3.989 26 O -0.231 6.231 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.256 0.744 39 H 0.248 0.752 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.210 14.322 33.534 36.532 hybrid contribution -0.078 -0.143 -1.272 1.282 sum 2.132 14.179 32.263 35.306 Atomic orbital electron populations 1.22216 0.93220 1.02148 1.04286 1.23049 0.94639 0.93634 0.83125 1.21869 1.01840 0.91288 1.04437 1.21973 1.03882 0.88946 0.98145 1.20972 1.05443 0.97039 0.92422 1.20627 0.99277 0.89764 1.01333 1.21237 1.01217 1.00013 0.92035 1.21264 1.00745 0.96001 0.96513 1.17085 1.05749 0.91975 0.81220 1.42419 1.70146 1.14835 1.04626 1.16029 0.78444 0.83369 0.82117 1.90857 1.54407 1.32098 1.71757 1.45095 1.70183 1.19281 1.03492 1.21230 0.99729 0.87269 0.89572 1.21482 1.01825 0.99236 0.91242 1.19462 0.96679 0.95465 0.93379 1.21458 1.43408 1.00544 0.91425 0.94469 1.26001 0.95490 1.03144 0.94721 1.70064 1.50659 1.37048 1.01341 0.85687 0.79295 0.78795 0.79077 1.19268 1.21046 1.17012 1.19192 1.01920 0.84564 0.93178 1.86839 1.80765 1.15687 1.39835 0.88110 0.91732 0.93867 0.91532 0.91576 0.87759 0.86875 0.87536 0.82689 0.83249 0.84794 0.74409 0.75196 0.92132 0.92312 0.91751 0.91654 0.95910 0.96112 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 8.86 71.98 0.64 -1.35 16 2 C 0.09 1.22 1.26 -10.21 -0.01 1.21 16 3 C -0.14 -1.14 8.95 71.98 0.64 -0.49 16 4 C -0.09 -1.02 6.18 30.74 0.19 -0.83 16 5 C -0.16 -2.81 6.27 -19.53 -0.12 -2.93 16 6 C -0.09 -1.49 10.03 22.21 0.22 -1.27 16 7 C -0.13 -2.52 10.06 22.29 0.22 -2.30 16 8 C -0.12 -3.31 8.69 22.33 0.19 -3.12 16 9 C 0.14 3.56 6.46 38.26 0.25 3.81 16 10 N -0.67 -17.07 5.38 -316.54 -1.70 -18.78 16 11 C 0.70 21.29 8.36 179.06 1.50 22.78 16 12 O -0.61 -22.85 13.50 -4.02 -0.05 -22.90 16 13 N -0.73 -19.83 5.56 -478.52 -2.66 -22.49 16 14 C 0.15 4.71 5.67 86.38 0.49 5.20 16 15 C -0.10 -3.63 5.27 30.59 0.16 -3.47 16 16 C -0.01 -0.54 4.04 29.85 0.12 -0.42 16 17 C -0.53 -30.25 9.66 25.60 0.25 -30.00 16 18 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 19 C 0.00 0.19 5.47 84.66 0.46 0.65 16 20 N -0.95 -59.69 13.96 21.45 0.30 -59.39 16 21 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 25 C 0.06 1.34 6.79 22.76 0.15 1.49 16 26 O -0.32 -6.56 10.54 -96.05 -1.01 -7.57 16 27 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.72 8.07 -2.39 -0.02 0.70 16 30 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 33 H 0.11 0.76 7.92 -2.39 -0.02 0.74 16 34 H 0.11 0.87 7.93 -2.39 -0.02 0.85 16 35 H 0.16 1.49 8.06 -2.91 -0.02 1.46 16 36 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.13 4.17 5.76 -2.91 -0.02 4.15 16 38 H 0.42 8.49 8.80 -92.71 -0.82 7.68 16 39 H 0.41 8.85 8.49 -92.71 -0.79 8.06 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.02 1.03 7.20 -2.39 -0.02 1.01 16 45 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 46 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 Total: -1.00 -74.84 376.62 1.45 -73.39 By element: Atomic # 1 Polarization: 22.96 SS G_CDS: -0.66 Total: 22.30 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 5.36 Total: -11.04 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -4.07 Total: -100.66 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.07 Total: -30.47 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -74.84 1.45 -73.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530397509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.335 kcal (2) G-P(sol) polarization free energy of solvation -74.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds