Wall clock time and date at job start Tue Mar 31 2020 12:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00380 * 2 1 4 4 H 1.48500 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46979 * 300.00013 * 3 2 1 6 6 H 1.48503 * 109.47074 * 59.99642 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.46064 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31154 * 181.37838 * 10 9 7 12 12 N 1.46920 * 108.77435 * 305.36287 * 11 10 9 13 13 C 1.34777 * 120.63112 * 233.59040 * 12 11 10 14 14 O 1.21281 * 120.00115 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00138 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47505 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47556 * 179.97438 * 16 15 13 18 18 O 1.42894 * 109.47573 * 179.97438 * 17 16 15 19 19 C 1.35910 * 117.00621 * 180.02562 * 18 17 16 20 20 C 1.39138 * 120.47706 * 180.24394 * 19 18 17 21 21 C 1.38535 * 118.37336 * 180.24194 * 20 19 18 22 22 C 1.38262 * 119.22035 * 359.47237 * 21 20 19 23 23 N 1.31844 * 120.88422 * 0.30388 * 22 21 20 24 24 C 1.31834 * 121.78446 * 359.97438 * 23 22 21 25 25 C 1.46924 * 118.74127 * 53.86238 * 12 11 10 26 26 C 1.53042 * 109.45249 * 300.06499 * 9 7 2 27 27 H 0.97006 * 119.99815 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.45670 * 60.03330 * 9 7 2 29 29 H 1.09000 * 109.49681 * 61.42303 * 10 9 7 30 30 H 1.09008 * 109.52369 * 301.34040 * 10 9 7 31 31 H 1.09001 * 109.58380 * 185.57810 * 11 10 9 32 32 H 1.09000 * 109.70534 * 65.22202 * 11 10 9 33 33 H 1.09002 * 109.47071 * 59.99454 * 15 13 12 34 34 H 1.09001 * 109.46690 * 299.99605 * 15 13 12 35 35 H 1.08999 * 109.47453 * 59.98925 * 16 15 13 36 36 H 1.09006 * 109.46828 * 300.00037 * 16 15 13 37 37 H 1.09002 * 109.46851 * 59.99617 * 17 16 15 38 38 H 1.08998 * 109.47422 * 300.00280 * 17 16 15 39 39 H 1.07999 * 120.81005 * 0.02562 * 20 19 18 40 40 H 1.08002 * 120.39207 * 179.75678 * 21 20 19 41 41 H 1.08000 * 119.55595 * 180.28266 * 22 21 20 42 42 H 1.07997 * 119.66066 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.58339 * 65.92512 * 25 12 11 44 44 H 1.08996 * 109.58874 * 186.34931 * 25 12 11 45 45 H 1.09000 * 109.49330 * 298.56939 * 26 9 7 46 46 H 1.09000 * 109.49069 * 58.66973 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2456 -3.6622 -0.0005 11 6 1.4765 -4.9866 -0.0353 12 7 0.5223 -5.0087 1.0816 13 6 0.5115 -6.0349 1.9553 14 8 1.2941 -6.9520 1.8234 15 6 -0.4739 -6.0433 3.0956 16 6 -0.2766 -7.3100 3.9308 17 6 -1.2765 -7.3183 5.0887 18 8 -1.0927 -8.5016 5.8684 19 6 -1.9082 -8.6652 6.9433 20 6 -1.7884 -9.7887 7.7554 21 6 -2.6455 -9.9138 8.8366 22 6 -3.5770 -8.9210 9.0780 23 7 -3.6612 -7.8664 8.2913 24 6 -2.8683 -7.7121 7.2494 25 6 -0.4240 -3.8940 1.2245 26 6 0.3705 -2.5793 1.2487 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5567 -0.8907 29 1 2.8556 -3.6192 0.9018 30 1 2.8885 -3.5917 -0.8780 31 1 2.1750 -5.8175 0.0643 32 1 0.9372 -5.0738 -0.9785 33 1 -1.4889 -6.0246 2.6988 34 1 -0.3123 -5.1660 3.7218 35 1 0.7384 -7.3293 4.3275 36 1 -0.4385 -8.1872 3.3042 37 1 -2.2917 -7.2988 4.6923 38 1 -1.1144 -6.4412 5.7152 39 1 -1.0478 -10.5463 7.5459 40 1 -2.5837 -10.7746 9.4860 41 1 -4.2448 -9.0109 9.9220 42 1 -2.9675 -6.8346 6.6276 43 1 -1.1154 -3.8913 0.3819 44 1 -0.9800 -4.0037 2.1556 45 1 0.9985 -2.5468 2.1390 46 1 -0.3220 -1.7376 1.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541977427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:47 Heat of formation + Delta-G solvation = -54.185112 kcal Electronic energy + Delta-G solvation = -25673.586452 eV Core-core repulsion = 21948.891178 eV Total energy + Delta-G solvation = -3724.695274 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -40.91507 -39.80463 -38.52026 -36.92510 -34.11567 -33.55339 -32.61954 -31.35752 -30.54979 -30.09433 -27.72741 -26.05476 -24.27473 -23.50062 -22.88970 -22.40981 -21.59450 -19.82397 -18.71454 -18.15692 -17.27880 -16.94583 -16.72739 -16.68912 -16.12573 -15.40426 -15.37840 -14.78880 -14.58427 -14.22493 -14.09088 -13.48783 -13.46150 -13.21414 -13.16533 -12.83921 -12.72441 -12.50257 -12.33264 -12.28144 -11.72383 -11.61104 -11.46318 -11.32526 -10.99888 -10.91446 -10.65226 -10.43264 -10.16354 -10.07771 -9.79288 -9.73456 -9.46359 -9.21952 -8.97469 -8.79798 -8.43420 -8.05755 -6.08235 -4.14191 0.75061 0.93746 2.67317 2.91324 3.23905 3.32760 3.36773 3.45103 3.46514 4.14264 4.30413 4.36989 4.46855 4.58080 4.63909 4.68671 4.81719 4.92600 5.09337 5.15703 5.17612 5.20722 5.21688 5.40367 5.60711 5.61825 5.72271 5.76247 5.88230 5.90759 6.02788 6.05165 6.10924 6.18169 6.21166 6.40190 6.60575 6.84063 6.91254 6.98118 7.08418 7.21732 7.60111 7.61484 7.86044 7.86947 7.98484 8.35113 8.49206 8.89556 9.51290 10.97302 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.002130 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.726144 B =13139.819500 C =14140.280285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.123 4.123 11 C 0.111 3.889 12 N -0.600 5.600 13 C 0.511 3.489 14 O -0.559 6.559 15 C -0.137 4.137 16 C -0.101 4.101 17 C 0.055 3.945 18 O -0.306 6.306 19 C 0.085 3.915 20 C -0.112 4.112 21 C -0.132 4.132 22 C 0.054 3.946 23 N -0.450 5.450 24 C 0.015 3.985 25 C 0.101 3.899 26 C -0.124 4.124 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.157 0.843 42 H 0.160 0.840 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.198 -16.411 13.371 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.549 4.549 8 H 0.074 0.926 9 C 0.029 3.971 10 C -0.161 4.161 11 C -0.011 4.011 12 N -0.332 5.332 13 C 0.299 3.701 14 O -0.439 6.439 15 C -0.177 4.177 16 C -0.139 4.139 17 C -0.019 4.019 18 O -0.218 6.218 19 C 0.037 3.963 20 C -0.139 4.139 21 C -0.152 4.152 22 C -0.103 4.103 23 N -0.160 5.160 24 C -0.143 4.143 25 C -0.021 4.021 26 C -0.163 4.163 27 H 0.070 0.930 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.160 0.840 40 H 0.159 0.841 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.058 0.942 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.385 -16.221 13.362 22.276 hybrid contribution 0.871 0.664 -0.199 1.114 sum -6.513 -15.557 13.162 21.394 Atomic orbital electron populations 1.69838 1.05844 1.26396 1.51027 1.24964 0.94888 0.99098 0.95067 0.86559 0.80203 0.83799 0.77584 1.19831 1.21040 1.21039 1.21246 0.93012 0.90540 1.50151 0.92633 1.18644 0.92671 0.91779 0.93990 1.22006 0.98907 0.94202 1.01011 1.21698 0.91789 0.99731 0.87871 1.48260 1.35852 1.21164 1.27942 1.20382 0.84618 0.81880 0.83179 1.90654 1.41880 1.36302 1.75025 1.21535 1.00181 0.99472 0.96502 1.21221 0.99670 0.98401 0.94612 1.22981 1.00490 0.85808 0.92665 1.86093 1.55222 1.43379 1.37137 1.20113 0.91730 0.95634 0.88845 1.20991 1.01091 0.97092 0.94694 1.22033 0.95519 1.00425 0.97235 1.22677 0.98352 0.90215 0.99078 1.67531 1.22713 1.22420 1.03290 1.22999 0.94264 0.99717 0.97280 1.22167 0.91555 0.87625 1.00737 1.22105 1.00005 0.94550 0.99610 0.93008 0.95442 0.92967 0.92132 0.90359 0.92223 0.88711 0.88436 0.89915 0.89995 0.91493 0.91396 0.83959 0.84093 0.82561 0.82333 0.91814 0.91380 0.94188 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.92 11.31 55.43 0.63 -23.29 16 2 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 3 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -13.36 8.56 -34.44 -0.29 -13.65 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.10 2.06 -91.73 -0.19 0.91 16 10 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 11 C 0.11 1.98 6.43 -3.71 -0.02 1.96 16 12 N -0.60 -10.19 2.97 -172.51 -0.51 -10.70 16 13 C 0.51 8.24 7.70 -10.98 -0.08 8.15 16 14 O -0.56 -10.68 15.40 5.56 0.09 -10.60 16 15 C -0.14 -1.55 4.05 -27.88 -0.11 -1.67 16 16 C -0.10 -1.10 4.87 -26.74 -0.13 -1.23 16 17 C 0.06 0.49 4.75 37.15 0.18 0.67 16 18 O -0.31 -3.27 10.15 -19.46 -0.20 -3.47 16 19 C 0.08 0.85 6.71 -39.07 -0.26 0.59 16 20 C -0.11 -0.95 10.13 -39.14 -0.40 -1.34 16 21 C -0.13 -0.92 10.11 -39.46 -0.40 -1.32 16 22 C 0.05 0.44 11.18 -17.54 -0.20 0.25 16 23 N -0.45 -4.79 10.35 -13.13 -0.14 -4.92 16 24 C 0.02 0.15 10.22 -17.38 -0.18 -0.02 16 25 C 0.10 1.67 6.37 -3.49 -0.02 1.65 16 26 C -0.12 -2.61 5.17 -26.38 -0.14 -2.75 16 27 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 31 H 0.08 1.40 7.01 -51.93 -0.36 1.03 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.88 7.93 -51.93 -0.41 0.47 16 34 H 0.10 1.00 7.70 -51.93 -0.40 0.60 16 35 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 36 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 37 H 0.07 0.50 7.68 -51.93 -0.40 0.10 16 38 H 0.07 0.53 7.68 -51.93 -0.40 0.13 16 39 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 40 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.16 1.31 6.32 -52.49 -0.33 0.98 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.91 5.93 -51.93 -0.31 0.60 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.10 2.46 6.03 -51.93 -0.31 2.14 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -30.78 371.49 -9.15 -39.94 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.11 Total: 0.82 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.48 Total: -8.90 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.02 Total: -38.92 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.11 Total: -14.07 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.78 -9.15 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541977427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.247 kcal (2) G-P(sol) polarization free energy of solvation -30.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds