Wall clock time and date at job start Tue Mar 31 2020 12:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00380 * 2 1 4 4 H 1.48500 * 109.47430 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46979 * 300.00013 * 3 2 1 6 6 H 1.48503 * 109.47074 * 59.99642 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00046 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99950 * 359.97438 * 7 2 1 10 10 C 1.53039 * 109.46064 * 180.02562 * 9 7 2 11 11 C 1.53194 * 109.31154 * 181.37838 * 10 9 7 12 12 N 1.46920 * 108.77435 * 305.36287 * 11 10 9 13 13 C 1.34777 * 120.63112 * 233.59040 * 12 11 10 14 14 O 1.21281 * 120.00115 * 359.97438 * 13 12 11 15 15 C 1.50702 * 120.00138 * 180.02562 * 13 12 11 16 16 C 1.52998 * 109.47505 * 179.97438 * 15 13 12 17 17 C 1.52994 * 109.47556 * 179.97438 * 16 15 13 18 18 O 1.42894 * 109.47573 * 179.97438 * 17 16 15 19 19 C 1.35910 * 117.00621 * 180.02562 * 18 17 16 20 20 C 1.39138 * 120.47706 * 180.24394 * 19 18 17 21 21 C 1.38535 * 118.37336 * 180.24194 * 20 19 18 22 22 C 1.38262 * 119.22035 * 359.47237 * 21 20 19 23 23 N 1.31844 * 120.88422 * 0.30388 * 22 21 20 24 24 C 1.31834 * 121.78446 * 359.97438 * 23 22 21 25 25 C 1.46924 * 118.74127 * 53.86238 * 12 11 10 26 26 C 1.53042 * 109.45249 * 300.06499 * 9 7 2 27 27 H 0.97006 * 119.99815 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.45670 * 60.03330 * 9 7 2 29 29 H 1.09000 * 109.49681 * 61.42303 * 10 9 7 30 30 H 1.09008 * 109.52369 * 301.34040 * 10 9 7 31 31 H 1.09001 * 109.58380 * 185.57810 * 11 10 9 32 32 H 1.09000 * 109.70534 * 65.22202 * 11 10 9 33 33 H 1.09002 * 109.47071 * 59.99454 * 15 13 12 34 34 H 1.09001 * 109.46690 * 299.99605 * 15 13 12 35 35 H 1.08999 * 109.47453 * 59.98925 * 16 15 13 36 36 H 1.09006 * 109.46828 * 300.00037 * 16 15 13 37 37 H 1.09002 * 109.46851 * 59.99617 * 17 16 15 38 38 H 1.08998 * 109.47422 * 300.00280 * 17 16 15 39 39 H 1.07999 * 120.81005 * 0.02562 * 20 19 18 40 40 H 1.08002 * 120.39207 * 179.75678 * 21 20 19 41 41 H 1.08000 * 119.55595 * 180.28266 * 22 21 20 42 42 H 1.07997 * 119.66066 * 179.97438 * 24 23 22 43 43 H 1.09001 * 109.58339 * 65.92512 * 25 12 11 44 44 H 1.08996 * 109.58874 * 186.34931 * 25 12 11 45 45 H 1.09000 * 109.49330 * 298.56939 * 26 9 7 46 46 H 1.09000 * 109.49069 * 58.66973 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2456 -3.6622 -0.0005 11 6 1.4765 -4.9866 -0.0353 12 7 0.5223 -5.0087 1.0816 13 6 0.5115 -6.0349 1.9553 14 8 1.2941 -6.9520 1.8234 15 6 -0.4739 -6.0433 3.0956 16 6 -0.2766 -7.3100 3.9308 17 6 -1.2765 -7.3183 5.0887 18 8 -1.0927 -8.5016 5.8684 19 6 -1.9082 -8.6652 6.9433 20 6 -1.7884 -9.7887 7.7554 21 6 -2.6455 -9.9138 8.8366 22 6 -3.5770 -8.9210 9.0780 23 7 -3.6612 -7.8664 8.2913 24 6 -2.8683 -7.7121 7.2494 25 6 -0.4240 -3.8940 1.2245 26 6 0.3705 -2.5793 1.2487 27 1 -0.4850 0.8401 0.0004 28 1 0.6245 -2.5567 -0.8907 29 1 2.8556 -3.6192 0.9018 30 1 2.8885 -3.5917 -0.8780 31 1 2.1750 -5.8175 0.0643 32 1 0.9372 -5.0738 -0.9785 33 1 -1.4889 -6.0246 2.6988 34 1 -0.3123 -5.1660 3.7218 35 1 0.7384 -7.3293 4.3275 36 1 -0.4385 -8.1872 3.3042 37 1 -2.2917 -7.2988 4.6923 38 1 -1.1144 -6.4412 5.7152 39 1 -1.0478 -10.5463 7.5459 40 1 -2.5837 -10.7746 9.4860 41 1 -4.2448 -9.0109 9.9220 42 1 -2.9675 -6.8346 6.6276 43 1 -1.1154 -3.8913 0.3819 44 1 -0.9800 -4.0037 2.1556 45 1 0.9985 -2.5468 2.1390 46 1 -0.3220 -1.7376 1.2602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541977427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:45 Heat of formation + Delta-G solvation = -71.636016 kcal Electronic energy + Delta-G solvation = -25674.343180 eV Core-core repulsion = 21948.891178 eV Total energy + Delta-G solvation = -3725.452002 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -41.57349 -41.11763 -39.23142 -38.43076 -35.32870 -35.02233 -33.31500 -32.96937 -31.71183 -31.16077 -28.81057 -27.63123 -25.17138 -24.54445 -24.09201 -23.70103 -22.56546 -21.29828 -19.82150 -19.15113 -18.60268 -18.02753 -17.58591 -17.49248 -17.39671 -16.71704 -16.49509 -16.42409 -15.36120 -15.17443 -15.05042 -14.88066 -14.61276 -14.56232 -14.25426 -14.13905 -13.90380 -13.68893 -13.51070 -13.15866 -13.08539 -12.89756 -12.79026 -12.55827 -12.43289 -12.29314 -12.13997 -11.92326 -11.70089 -11.47593 -11.00316 -10.97538 -10.67527 -10.65890 -10.43244 -10.38991 -9.52758 -9.45606 -8.08325 -6.20973 0.14973 0.30148 1.39554 1.43426 1.52860 1.65761 1.89337 2.29031 2.43780 2.82860 3.18301 3.49325 3.58562 3.70056 3.90209 3.93405 3.98696 4.06611 4.14008 4.25889 4.28256 4.35671 4.40170 4.42129 4.51884 4.54920 4.56926 4.63767 4.65948 4.77987 4.88163 4.99512 5.01240 5.04441 5.15422 5.18405 5.21507 5.27309 5.44401 5.56884 5.59827 5.66394 5.99814 6.15547 6.24802 6.40054 6.54906 6.88460 6.97731 7.20169 7.46664 8.95036 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019971 B = 0.002130 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.726144 B =13139.819500 C =14140.280285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.045 0.955 9 C 0.044 3.956 10 C -0.113 4.113 11 C 0.116 3.884 12 N -0.605 5.605 13 C 0.507 3.493 14 O -0.592 6.592 15 C -0.130 4.130 16 C -0.094 4.094 17 C 0.057 3.943 18 O -0.324 6.324 19 C 0.067 3.933 20 C -0.123 4.123 21 C -0.123 4.123 22 C 0.046 3.954 23 N -0.480 5.480 24 C 0.002 3.998 25 C 0.112 3.888 26 C -0.117 4.117 27 H 0.262 0.738 28 H 0.003 0.997 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.126 0.874 34 H 0.116 0.884 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.154 0.846 40 H 0.175 0.825 41 H 0.182 0.818 42 H 0.169 0.831 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.029 0.971 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.372 -17.149 14.900 24.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.181 4.181 3 Si 0.773 3.227 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.572 4.572 8 H 0.063 0.937 9 C 0.025 3.975 10 C -0.151 4.151 11 C -0.007 4.007 12 N -0.337 5.337 13 C 0.297 3.703 14 O -0.474 6.474 15 C -0.169 4.169 16 C -0.132 4.132 17 C -0.017 4.017 18 O -0.237 6.237 19 C 0.020 3.980 20 C -0.149 4.149 21 C -0.142 4.142 22 C -0.111 4.111 23 N -0.190 5.190 24 C -0.155 4.155 25 C -0.009 4.009 26 C -0.155 4.155 27 H 0.071 0.929 28 H 0.021 0.979 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.172 0.828 40 H 0.193 0.807 41 H 0.199 0.801 42 H 0.186 0.814 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.048 0.952 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.565 -16.958 14.894 24.141 hybrid contribution 1.265 0.847 -0.654 1.657 sum -7.300 -16.111 14.240 22.708 Atomic orbital electron populations 1.69938 1.06672 1.27056 1.51269 1.25604 0.95722 1.01816 0.94919 0.85680 0.78969 0.80386 0.77631 1.19876 1.20743 1.20509 1.21572 0.92840 0.92353 1.50481 0.93697 1.18625 0.93088 0.91751 0.94007 1.21847 0.98331 0.94513 1.00450 1.21546 0.92085 0.98023 0.89009 1.48321 1.35761 1.21673 1.27970 1.21205 0.84756 0.80774 0.83515 1.90641 1.43468 1.37487 1.75831 1.21577 1.00141 1.00332 0.94860 1.21088 0.99284 0.97744 0.95057 1.22978 1.00688 0.85920 0.92116 1.86050 1.55829 1.44123 1.37678 1.20297 0.92109 0.96480 0.89135 1.21344 1.01665 0.97000 0.94925 1.22394 0.94104 1.00966 0.96771 1.23211 0.98837 0.89796 0.99278 1.67544 1.23550 1.23827 1.04091 1.23166 0.94458 1.00268 0.97622 1.22067 0.90796 0.84976 1.03110 1.21875 0.99351 0.96444 0.97867 0.92896 0.97856 0.94088 0.92122 0.90431 0.91298 0.85644 0.86578 0.91860 0.91276 0.89618 0.90091 0.82813 0.80711 0.80118 0.81366 0.91407 0.87311 0.95166 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.10 11.31 21.45 0.24 -48.86 16 2 C 0.02 0.98 5.30 84.66 0.45 1.43 16 3 Si 0.95 42.32 29.54 68.60 2.03 44.35 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.53 -28.42 8.56 25.60 0.22 -28.20 16 8 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 9 C 0.04 2.06 2.06 -11.51 -0.02 2.03 16 10 C -0.11 -4.58 5.30 30.67 0.16 -4.42 16 11 C 0.12 4.09 6.43 86.36 0.56 4.64 16 12 N -0.61 -19.70 2.97 -818.07 -2.43 -22.13 16 13 C 0.51 15.54 7.70 87.66 0.67 16.21 16 14 O -0.59 -22.35 15.40 -3.03 -0.05 -22.39 16 15 C -0.13 -2.58 4.05 29.85 0.12 -2.46 16 16 C -0.09 -1.90 4.87 30.59 0.15 -1.75 16 17 C 0.06 0.92 4.75 71.98 0.34 1.26 16 18 O -0.32 -6.60 10.15 -92.53 -0.94 -7.54 16 19 C 0.07 1.28 6.71 22.60 0.15 1.43 16 20 C -0.12 -1.88 10.13 22.56 0.23 -1.65 16 21 C -0.12 -1.40 10.11 22.35 0.23 -1.18 16 22 C 0.05 0.66 11.18 84.70 0.95 1.61 16 23 N -0.48 -9.59 10.35 -195.44 -2.02 -11.61 16 24 C 0.00 0.04 10.22 84.81 0.87 0.90 16 25 C 0.11 3.49 6.37 86.51 0.55 4.04 16 26 C -0.12 -4.88 5.17 30.82 0.16 -4.72 16 27 H 0.26 13.45 8.31 -92.70 -0.77 12.68 16 28 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.08 2.76 7.01 -2.39 -0.02 2.74 16 32 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.13 1.80 7.93 -2.39 -0.02 1.78 16 34 H 0.12 1.96 7.70 -2.39 -0.02 1.94 16 35 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 36 H 0.07 1.57 8.10 -2.38 -0.02 1.55 16 37 H 0.09 1.04 7.68 -2.39 -0.02 1.03 16 38 H 0.08 1.08 7.68 -2.39 -0.02 1.06 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 42 H 0.17 2.54 6.32 -2.91 -0.02 2.52 16 43 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.11 2.51 5.93 -2.39 -0.01 2.50 16 45 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.08 3.78 6.03 -2.39 -0.01 3.77 16 Total: -1.00 -67.94 371.49 3.58 -64.37 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.96 Total: 14.65 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 5.78 Total: -10.83 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -4.21 Total: -82.60 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.99 Total: -29.93 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.94 3.58 -64.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541977427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.268 kcal (2) G-P(sol) polarization free energy of solvation -67.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds