Wall clock time and date at job start Tue Mar 31 2020 12:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00413 * 2 1 4 4 C 1.38212 * 120.00193 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00031 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.38222 * 119.99636 * 180.27872 * 2 1 3 8 8 C 1.50693 * 120.00217 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.51456 * 325.15817 * 8 7 2 10 10 C 1.53300 * 109.50987 * 85.25848 * 8 7 2 11 11 N 1.47148 * 108.38600 * 172.22468 * 10 8 7 12 12 C 1.34777 * 120.98259 * 129.43833 * 11 10 8 13 13 O 1.21582 * 120.00259 * 354.78937 * 12 11 10 14 14 N 1.34778 * 119.99964 * 174.78094 * 12 11 10 15 15 C 1.46499 * 119.99993 * 184.97951 * 14 12 11 16 16 C 1.53000 * 109.47244 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47365 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99722 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00012 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00038 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99930 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47291 * 59.99867 * 21 19 17 23 23 H 1.48494 * 109.47150 * 180.02562 * 21 19 17 24 24 H 1.48512 * 109.46745 * 299.99935 * 21 19 17 25 25 C 1.47154 * 118.03698 * 309.46895 * 11 10 8 26 26 C 1.53290 * 108.38356 * 50.53124 * 25 11 10 27 27 O 1.42961 * 109.51280 * 205.00271 * 8 7 2 28 28 H 1.08998 * 109.47373 * 89.99938 * 1 2 3 29 29 H 1.09000 * 109.47328 * 210.00532 * 1 2 3 30 30 H 1.08999 * 109.46804 * 330.00137 * 1 2 3 31 31 H 1.07998 * 119.99837 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.99876 * 180.02562 * 4 3 2 33 33 H 1.07998 * 119.99753 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.99959 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.68125 * 291.94988 * 10 8 7 36 36 H 1.08998 * 109.68500 * 52.46329 * 10 8 7 37 37 H 0.97002 * 120.00137 * 4.98494 * 14 12 11 38 38 H 1.09000 * 109.47369 * 300.00173 * 15 14 12 39 39 H 1.08999 * 109.47358 * 60.00260 * 15 14 12 40 40 H 1.09008 * 109.46738 * 300.00111 * 16 15 14 41 41 H 1.08999 * 109.47347 * 59.99498 * 16 15 14 42 42 H 0.97002 * 120.00088 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.68558 * 170.25528 * 25 11 10 44 44 H 1.09007 * 109.68021 * 290.77295 * 25 11 10 45 45 H 1.09003 * 109.51544 * 67.62629 * 26 25 11 46 46 H 1.09007 * 109.51246 * 187.72553 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 -0.0005 7 6 2.1980 -1.1971 -0.0058 8 6 1.4445 -2.5021 -0.0128 9 1 0.5320 -2.3988 0.5744 10 6 1.0857 -2.8784 -1.4549 11 7 0.5209 -4.2372 -1.4531 12 6 -0.6500 -4.5026 -2.0655 13 8 -1.3025 -3.5974 -2.5483 14 7 -1.0975 -5.7716 -2.1430 15 6 -2.3134 -6.0745 -2.9020 16 6 -2.5989 -7.5759 -2.8300 17 6 -3.8493 -7.8876 -3.6113 18 1 -4.3868 -7.0941 -4.1090 19 6 -4.3070 -9.1858 -3.6906 20 7 -3.6521 -10.1521 -3.0848 21 14 -5.8565 -9.5722 -4.6596 22 1 -5.6668 -9.1715 -6.0769 23 1 -6.1336 -11.0294 -4.5896 24 1 -7.0012 -8.8228 -4.0822 25 6 1.2719 -5.2975 -0.7624 26 6 1.6216 -4.8033 0.6459 27 8 2.2631 -3.5291 0.5519 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 5.3517 -0.0002 0.0005 34 1 4.1206 -2.1324 -0.0010 35 1 0.3498 -2.1755 -1.8454 36 1 1.9819 -2.8536 -2.0747 37 1 -0.6146 -6.4843 -1.6961 38 1 -3.1532 -5.5245 -2.4774 39 1 -2.1751 -5.7801 -3.9424 40 1 -1.7590 -8.1262 -3.2543 41 1 -2.7373 -7.8699 -1.7895 42 1 -3.9743 -11.0653 -3.1403 43 1 0.6594 -6.1966 -0.6943 44 1 2.1868 -5.5174 -1.3126 45 1 0.7098 -4.7092 1.2357 46 1 2.2934 -5.5154 1.1253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000544114696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:16 Heat of formation + Delta-G solvation = -48.669102 kcal Electronic energy + Delta-G solvation = -26433.477721 eV Core-core repulsion = 22709.021640 eV Total energy + Delta-G solvation = -3724.456082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72445 -39.58375 -38.25403 -35.01400 -34.70639 -33.67528 -32.82133 -32.36479 -30.02645 -29.62967 -27.58460 -27.03837 -24.92687 -24.18009 -23.03449 -21.78481 -21.06536 -20.76362 -19.61769 -18.14841 -16.97129 -16.78934 -16.47027 -15.95600 -15.74914 -15.46084 -15.12742 -14.73076 -14.61049 -14.51281 -14.20840 -13.93507 -13.78733 -13.58696 -13.33159 -12.92789 -12.85243 -12.49600 -12.34605 -12.25408 -12.10219 -11.79858 -11.33845 -11.18664 -11.14872 -11.03652 -10.78074 -10.65788 -10.38961 -10.27249 -9.94723 -9.57427 -9.30088 -9.08246 -8.89915 -8.68879 -8.46063 -8.21500 -6.10561 -4.13301 1.06098 1.18337 2.72131 3.30630 3.34385 3.35214 3.37932 3.44742 3.55661 4.15001 4.41949 4.49785 4.56568 4.60554 4.68614 4.80558 4.83685 4.88214 4.98700 5.01759 5.12515 5.26512 5.29551 5.36337 5.45421 5.50284 5.52667 5.57289 5.62619 5.74407 5.83648 5.97234 6.19067 6.21863 6.29734 6.36709 6.38130 6.42722 6.74020 6.76931 6.89964 6.94187 7.07472 7.52605 7.60406 7.88070 8.20209 8.31586 8.86821 8.93484 9.51434 11.01043 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.002329 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.944287 B =12020.812881 C =12658.424847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.071 4.071 3 C -0.123 4.123 4 C -0.114 4.114 5 C -0.131 4.131 6 C -0.087 4.087 7 C -0.084 4.084 8 C 0.119 3.881 9 H 0.076 0.924 10 C 0.111 3.889 11 N -0.639 5.639 12 C 0.704 3.296 13 O -0.593 6.593 14 N -0.737 5.737 15 C 0.139 3.861 16 C 0.014 3.986 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.059 3.941 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.075 3.925 26 C 0.050 3.950 27 O -0.374 6.374 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.392 0.608 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.263 0.737 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.726 17.940 9.925 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.071 4.071 3 C -0.141 4.141 4 C -0.132 4.132 5 C -0.149 4.149 6 C -0.105 4.105 7 C -0.084 4.084 8 C 0.060 3.940 9 H 0.094 0.906 10 C -0.013 4.013 11 N -0.379 5.379 12 C 0.406 3.594 13 O -0.471 6.471 14 N -0.392 5.392 15 C 0.016 3.984 16 C -0.024 4.024 17 C -0.560 4.560 18 H 0.077 0.923 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C -0.049 4.049 26 C -0.028 4.028 27 O -0.292 6.292 28 H 0.097 0.903 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.148 0.852 35 H 0.122 0.878 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 16.371 18.405 9.605 26.439 hybrid contribution -0.734 -0.847 -0.342 1.172 sum 15.637 17.558 9.264 25.270 Atomic orbital electron populations 1.20943 0.90936 1.03045 1.03160 1.19711 0.96159 0.92283 0.98918 1.20974 0.94263 0.97247 1.01603 1.21161 0.94300 0.98094 0.99694 1.21148 0.99902 0.92454 1.01393 1.21001 0.93396 0.98460 0.97626 1.19308 0.93965 0.92432 1.02735 1.21268 0.92990 0.85561 0.94156 0.90604 1.22004 0.99618 0.83895 0.95791 1.47309 1.22326 1.09507 1.58753 1.15933 0.80303 0.84093 0.79091 1.90876 1.57499 1.44857 1.53869 1.45698 1.30616 1.06363 1.56568 1.21625 0.83141 0.99662 0.93953 1.19318 0.97448 0.87718 0.97899 1.21002 1.09384 0.93361 1.32249 0.92257 1.24996 0.97373 0.96283 0.95645 1.69943 1.39619 1.00456 1.43318 0.86560 0.83238 0.77114 0.80550 1.20097 1.21256 1.20099 1.22332 0.97563 0.91208 0.93775 1.22990 0.98755 0.85384 0.95628 1.87918 1.40335 1.18271 1.82702 0.90350 0.91219 0.91285 0.85908 0.86140 0.86065 0.85231 0.87820 0.91073 0.77250 0.92647 0.92770 0.96002 0.96010 0.92792 0.88999 0.90459 0.92397 0.87299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.48 36.01 0.34 -0.78 16 2 C -0.07 -0.70 5.88 -104.62 -0.62 -1.31 16 3 C -0.12 -1.07 9.70 -39.58 -0.38 -1.46 16 4 C -0.11 -0.93 10.05 -39.58 -0.40 -1.33 16 5 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 6 C -0.09 -0.86 9.35 -39.58 -0.37 -1.23 16 7 C -0.08 -0.89 5.07 -104.62 -0.53 -1.42 16 8 C 0.12 1.32 2.50 -27.73 -0.07 1.25 16 9 H 0.08 0.87 6.16 -51.93 -0.32 0.55 16 10 C 0.11 1.40 5.93 -3.53 -0.02 1.38 16 11 N -0.64 -8.87 3.02 -178.00 -0.54 -9.41 16 12 C 0.70 12.64 8.31 -86.92 -0.72 11.92 16 13 O -0.59 -12.73 15.82 5.29 0.08 -12.64 16 14 N -0.74 -13.23 5.47 -65.23 -0.36 -13.59 16 15 C 0.14 2.99 5.62 -4.04 -0.02 2.96 16 16 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 17 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 21 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 C 0.08 0.78 6.57 -3.54 -0.02 0.76 16 26 C 0.05 0.46 6.98 37.31 0.26 0.72 16 27 O -0.37 -4.06 9.22 -35.23 -0.32 -4.38 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.66 6.04 -51.93 -0.31 0.35 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 32 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.13 1.23 7.35 -52.49 -0.39 0.85 16 35 H 0.10 1.45 6.95 -51.93 -0.36 1.09 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.39 6.08 6.03 -40.82 -0.25 5.83 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.09 0.90 5.78 -51.93 -0.30 0.60 16 44 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.11 0.73 8.14 -51.92 -0.42 0.31 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -32.64 372.69 -10.27 -42.91 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.96 Total: 3.46 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.50 Total: -3.04 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.16 Total: -48.22 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.24 Total: -17.03 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.64 -10.27 -42.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544114696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.758 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds