Wall clock time and date at job start Tue Mar 31 2020 12:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38255 * 120.00413 * 2 1 4 4 C 1.38212 * 120.00193 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00031 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99920 * 0.02562 * 5 4 3 7 7 C 1.38222 * 119.99636 * 180.27872 * 2 1 3 8 8 C 1.50693 * 120.00217 * 0.02562 * 7 2 1 9 9 H 1.09000 * 109.51456 * 325.15817 * 8 7 2 10 10 C 1.53300 * 109.50987 * 85.25848 * 8 7 2 11 11 N 1.47148 * 108.38600 * 172.22468 * 10 8 7 12 12 C 1.34777 * 120.98259 * 129.43833 * 11 10 8 13 13 O 1.21582 * 120.00259 * 354.78937 * 12 11 10 14 14 N 1.34778 * 119.99964 * 174.78094 * 12 11 10 15 15 C 1.46499 * 119.99993 * 184.97951 * 14 12 11 16 16 C 1.53000 * 109.47244 * 180.02562 * 15 14 12 17 17 C 1.50701 * 109.47365 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99722 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00012 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00038 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99930 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47291 * 59.99867 * 21 19 17 23 23 H 1.48494 * 109.47150 * 180.02562 * 21 19 17 24 24 H 1.48512 * 109.46745 * 299.99935 * 21 19 17 25 25 C 1.47154 * 118.03698 * 309.46895 * 11 10 8 26 26 C 1.53290 * 108.38356 * 50.53124 * 25 11 10 27 27 O 1.42961 * 109.51280 * 205.00271 * 8 7 2 28 28 H 1.08998 * 109.47373 * 89.99938 * 1 2 3 29 29 H 1.09000 * 109.47328 * 210.00532 * 1 2 3 30 30 H 1.08999 * 109.46804 * 330.00137 * 1 2 3 31 31 H 1.07998 * 119.99837 * 359.97438 * 3 2 1 32 32 H 1.08003 * 119.99876 * 180.02562 * 4 3 2 33 33 H 1.07998 * 119.99753 * 179.97438 * 5 4 3 34 34 H 1.07998 * 119.99959 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.68125 * 291.94988 * 10 8 7 36 36 H 1.08998 * 109.68500 * 52.46329 * 10 8 7 37 37 H 0.97002 * 120.00137 * 4.98494 * 14 12 11 38 38 H 1.09000 * 109.47369 * 300.00173 * 15 14 12 39 39 H 1.08999 * 109.47358 * 60.00260 * 15 14 12 40 40 H 1.09008 * 109.46738 * 300.00111 * 16 15 14 41 41 H 1.08999 * 109.47347 * 59.99498 * 16 15 14 42 42 H 0.97002 * 120.00088 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.68558 * 170.25528 * 25 11 10 44 44 H 1.09007 * 109.68021 * 290.77295 * 25 11 10 45 45 H 1.09003 * 109.51544 * 67.62629 * 26 25 11 46 46 H 1.09007 * 109.51246 * 187.72553 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0005 6 6 3.5806 -1.1971 -0.0005 7 6 2.1980 -1.1971 -0.0058 8 6 1.4445 -2.5021 -0.0128 9 1 0.5320 -2.3988 0.5744 10 6 1.0857 -2.8784 -1.4549 11 7 0.5209 -4.2372 -1.4531 12 6 -0.6500 -4.5026 -2.0655 13 8 -1.3025 -3.5974 -2.5483 14 7 -1.0975 -5.7716 -2.1430 15 6 -2.3134 -6.0745 -2.9020 16 6 -2.5989 -7.5759 -2.8300 17 6 -3.8493 -7.8876 -3.6113 18 1 -4.3868 -7.0941 -4.1090 19 6 -4.3070 -9.1858 -3.6906 20 7 -3.6521 -10.1521 -3.0848 21 14 -5.8565 -9.5722 -4.6596 22 1 -5.6668 -9.1715 -6.0769 23 1 -6.1336 -11.0294 -4.5896 24 1 -7.0012 -8.8228 -4.0822 25 6 1.2719 -5.2975 -0.7624 26 6 1.6216 -4.8033 0.6459 27 8 2.2631 -3.5291 0.5519 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0010 33 1 5.3517 -0.0002 0.0005 34 1 4.1206 -2.1324 -0.0010 35 1 0.3498 -2.1755 -1.8454 36 1 1.9819 -2.8536 -2.0747 37 1 -0.6146 -6.4843 -1.6961 38 1 -3.1532 -5.5245 -2.4774 39 1 -2.1751 -5.7801 -3.9424 40 1 -1.7590 -8.1262 -3.2543 41 1 -2.7373 -7.8699 -1.7895 42 1 -3.9743 -11.0653 -3.1403 43 1 0.6594 -6.1966 -0.6943 44 1 2.1868 -5.5174 -1.3126 45 1 0.7098 -4.7092 1.2357 46 1 2.2934 -5.5154 1.1253 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544114696.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:15 Heat of formation + Delta-G solvation = -68.024883 kcal Electronic energy + Delta-G solvation = -26434.317051 eV Core-core repulsion = 22709.021640 eV Total energy + Delta-G solvation = -3725.295411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.78605 -40.58447 -39.23304 -36.70518 -35.90270 -34.86859 -34.33211 -33.14365 -31.57196 -30.71346 -28.67560 -27.82861 -26.58586 -25.26491 -24.01880 -22.95108 -22.52730 -21.56563 -20.91459 -19.39107 -18.51632 -17.81259 -17.57263 -17.22340 -16.93246 -16.54281 -16.33450 -16.08978 -15.60168 -15.53118 -15.35391 -15.25808 -14.97974 -14.61290 -14.30892 -14.26210 -13.99409 -13.72531 -13.31959 -13.21309 -13.07028 -12.93514 -12.83286 -12.66977 -12.53817 -12.25608 -12.08013 -11.85415 -11.72590 -11.66076 -11.46045 -11.24740 -11.14374 -10.60319 -10.21622 -9.80710 -9.60545 -9.38548 -8.24094 -6.34287 0.35463 0.49766 1.41414 1.44351 1.48208 1.53554 2.02413 2.40253 2.56197 2.83459 2.89106 3.10693 3.68116 3.72020 3.79255 3.92636 4.00434 4.08687 4.11706 4.19616 4.27599 4.37877 4.45329 4.47142 4.49757 4.61294 4.67683 4.74919 4.75538 4.82640 4.84235 4.87029 4.92907 5.14197 5.25103 5.27407 5.30894 5.48245 5.54159 5.57759 5.63386 5.67552 5.74968 5.82877 6.06531 6.12454 6.16270 6.78009 6.88065 7.34750 7.45015 8.87521 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029345 B = 0.002329 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.944287 B =12020.812881 C =12658.424847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.085 4.085 3 C -0.129 4.129 4 C -0.115 4.115 5 C -0.134 4.134 6 C -0.098 4.098 7 C -0.102 4.102 8 C 0.130 3.870 9 H 0.068 0.932 10 C 0.112 3.888 11 N -0.633 5.633 12 C 0.702 3.298 13 O -0.632 6.632 14 N -0.732 5.732 15 C 0.160 3.840 16 C 0.025 3.975 17 C -0.547 4.547 18 H 0.059 0.941 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.965 3.035 22 H -0.269 1.269 23 H -0.280 1.280 24 H -0.269 1.269 25 C 0.069 3.931 26 C 0.051 3.949 27 O -0.377 6.377 28 H 0.069 0.931 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.405 0.595 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.266 0.734 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.055 0.945 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.806 18.593 10.376 27.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.085 4.085 3 C -0.147 4.147 4 C -0.133 4.133 5 C -0.152 4.152 6 C -0.116 4.116 7 C -0.102 4.102 8 C 0.071 3.929 9 H 0.085 0.915 10 C -0.011 4.011 11 N -0.371 5.371 12 C 0.404 3.596 13 O -0.514 6.514 14 N -0.388 5.388 15 C 0.036 3.964 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.077 0.923 19 C -0.191 4.191 20 N -0.565 5.565 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.194 1.194 25 C -0.053 4.053 26 C -0.027 4.027 27 O -0.296 6.296 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.243 0.757 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.027 0.973 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.073 0.927 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 17.505 19.053 10.092 27.772 hybrid contribution -0.975 -1.011 -0.442 1.472 sum 16.530 18.042 9.651 26.304 Atomic orbital electron populations 1.20911 0.90891 1.03353 1.02660 1.19878 0.96430 0.92725 0.99459 1.21267 0.94878 0.97500 1.01015 1.21516 0.94224 0.99096 0.98422 1.21449 1.01107 0.92091 1.00542 1.21116 0.93156 0.99219 0.98103 1.19359 0.94464 0.92238 1.04158 1.21081 0.92942 0.86214 0.92640 0.91457 1.22068 0.99026 0.82811 0.97231 1.47339 1.21076 1.10954 1.57714 1.16024 0.81161 0.83325 0.79133 1.90845 1.59060 1.45855 1.55638 1.45381 1.29820 1.07092 1.56515 1.21114 0.84271 0.97279 0.93774 1.19115 0.96146 0.89437 0.96515 1.21416 1.10542 0.93786 1.32802 0.92315 1.25858 1.00601 0.96100 0.96565 1.70044 1.41183 1.00860 1.44370 0.85506 0.79269 0.77121 0.79197 1.19380 1.20569 1.19379 1.22633 0.97773 0.90410 0.94509 1.23155 0.99503 0.85286 0.94706 1.87925 1.40476 1.18718 1.82471 0.91244 0.92220 0.89663 0.84086 0.83579 0.83925 0.85174 0.89618 0.90451 0.75735 0.93755 0.93785 0.97264 0.97249 0.92521 0.88333 0.88861 0.92708 0.84120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.48 71.24 0.68 -1.55 16 2 C -0.08 -1.64 5.88 -19.86 -0.12 -1.75 16 3 C -0.13 -2.04 9.70 22.27 0.22 -1.83 16 4 C -0.11 -1.61 10.05 22.27 0.22 -1.39 16 5 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 6 C -0.10 -1.83 9.35 22.27 0.21 -1.62 16 7 C -0.10 -2.11 5.07 -19.86 -0.10 -2.21 16 8 C 0.13 2.87 2.50 29.95 0.07 2.94 16 9 H 0.07 1.59 6.16 -2.39 -0.01 1.58 16 10 C 0.11 2.86 5.93 86.36 0.51 3.37 16 11 N -0.63 -17.43 3.02 -835.35 -2.52 -19.95 16 12 C 0.70 25.52 8.31 179.05 1.49 27.01 16 13 O -0.63 -27.94 15.82 -3.97 -0.06 -28.00 16 14 N -0.73 -26.45 5.47 -478.54 -2.62 -29.06 16 15 C 0.16 7.01 5.62 86.38 0.49 7.50 16 16 C 0.03 1.28 5.09 29.85 0.15 1.43 16 17 C -0.55 -30.54 9.11 25.60 0.23 -30.30 16 18 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 19 C 0.01 0.43 5.46 84.66 0.46 0.89 16 20 N -0.93 -53.84 13.29 21.45 0.28 -53.56 16 21 Si 0.96 43.50 29.54 68.60 2.03 45.52 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C 0.07 1.35 6.57 86.35 0.57 1.91 16 26 C 0.05 0.84 6.98 72.08 0.50 1.34 16 27 O -0.38 -7.73 9.22 -148.98 -1.37 -9.10 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.19 6.04 -2.39 -0.01 1.17 16 30 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 33 H 0.14 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.13 2.33 7.35 -2.91 -0.02 2.31 16 35 H 0.09 2.51 6.95 -2.39 -0.02 2.50 16 36 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.40 12.43 6.03 -92.71 -0.56 11.87 16 38 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.46 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.10 1.79 5.78 -2.39 -0.01 1.77 16 44 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -70.10 372.69 1.97 -68.13 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.42 Total: 22.08 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 5.81 Total: 3.93 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -4.85 Total: -102.57 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.44 Total: -37.10 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -70.10 1.97 -68.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544114696.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.110 kcal (2) G-P(sol) polarization free energy of solvation -70.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds