Wall clock time and date at job start Tue Mar 31 2020 12:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99641 * 2 1 4 4 H 1.48502 * 109.46807 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46914 * 299.99905 * 3 2 1 6 6 H 1.48497 * 109.47110 * 60.00237 * 3 2 1 7 7 C 1.37872 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00084 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.35055 * 125.93281 * 124.99968 * 10 9 7 12 12 C 1.35066 * 107.98761 * 180.02562 * 11 10 9 13 13 C 1.50704 * 126.06972 * 180.02562 * 12 11 10 14 14 N 1.46906 * 109.46925 * 105.39675 * 13 12 11 15 15 C 1.46897 * 110.99999 * 184.74391 * 14 13 12 16 16 C 1.52990 * 109.47210 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47223 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.47111 * 180.02562 * 17 16 15 19 19 C 1.40865 * 107.85508 * 0.02562 * 12 11 10 20 20 C 1.48360 * 126.04227 * 180.02562 * 19 12 11 21 21 C 1.39774 * 120.90310 * 317.14652 * 20 19 12 22 22 C 1.37959 * 119.02115 * 179.76027 * 21 20 19 23 23 N 1.31944 * 120.88130 * 0.52895 * 22 21 20 24 24 C 1.31940 * 121.99743 * 359.74652 * 23 22 21 25 25 C 1.37961 * 120.88536 * 359.97164 * 24 23 22 26 26 N 1.31655 * 107.91400 * 359.97438 * 19 12 11 27 27 H 0.96998 * 120.00310 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47511 * 59.99110 * 9 7 2 29 29 H 1.09004 * 109.46469 * 299.99283 * 9 7 2 30 30 H 1.07999 * 126.00451 * 0.02562 * 11 10 9 31 31 H 1.09007 * 109.46946 * 225.38896 * 13 12 11 32 32 H 1.08991 * 109.47346 * 345.38980 * 13 12 11 33 33 H 1.00905 * 110.99402 * 308.69381 * 14 13 12 34 34 H 1.09003 * 109.46903 * 300.00067 * 15 14 13 35 35 H 1.09003 * 109.47073 * 59.99182 * 15 14 13 36 36 H 1.09003 * 109.47704 * 300.00142 * 16 15 14 37 37 H 1.09003 * 109.47309 * 59.99892 * 16 15 14 38 38 H 1.09000 * 109.47060 * 300.00042 * 17 16 15 39 39 H 1.09002 * 109.46876 * 60.00457 * 17 16 15 40 40 H 1.08000 * 120.48944 * 0.02562 * 21 20 19 41 41 H 1.07994 * 119.56453 * 180.27256 * 22 21 20 42 42 H 1.07998 * 119.55369 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.48501 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2415 -4.6226 0.8963 12 6 3.2583 -5.4438 0.5558 13 6 3.6646 -6.7008 1.2809 14 7 3.2361 -7.8732 0.5063 15 6 3.5151 -9.1171 1.2361 16 6 3.0556 -10.3131 0.4000 17 6 3.3468 -11.6087 1.1599 18 9 2.9271 -12.7023 0.3950 19 6 3.8716 -4.9165 -0.5976 20 6 5.0318 -5.5009 -1.3140 21 6 6.1279 -6.0089 -0.6110 22 6 7.1839 -6.5481 -1.3163 23 7 7.1722 -6.5784 -2.6354 24 6 6.1599 -6.1046 -3.3366 25 6 5.0612 -5.5532 -2.7104 26 7 3.2324 -3.8140 -0.9280 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5566 0.8904 30 1 1.5760 -4.7510 1.7372 31 1 4.7482 -6.7188 1.3977 32 1 3.1929 -6.7222 2.2633 33 1 2.2590 -7.8082 0.2628 34 1 4.5858 -9.1952 1.4249 35 1 2.9786 -9.1098 2.1849 36 1 1.9848 -10.2348 0.2115 37 1 3.5918 -10.3205 -0.5490 38 1 4.4176 -11.6868 1.3479 39 1 2.8108 -11.6016 2.1089 40 1 6.1461 -5.9836 0.4686 41 1 8.0333 -6.9471 -0.7819 42 1 6.1919 -6.1491 -4.4152 43 1 4.2360 -5.1677 -3.2907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564519043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:49 Heat of formation + Delta-G solvation = 47.453074 kcal Electronic energy + Delta-G solvation = -25479.811912 eV Core-core repulsion = 21668.356447 eV Total energy + Delta-G solvation = -3811.455465 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.85134 -40.80396 -39.53748 -36.85416 -34.24798 -32.97849 -32.78801 -31.06303 -30.84215 -29.74949 -27.50735 -25.62012 -24.24671 -23.65037 -23.09311 -22.05940 -21.83801 -20.10096 -19.50334 -16.97307 -16.75459 -16.63149 -16.19416 -15.90173 -15.73881 -15.56043 -15.28547 -15.25451 -14.48345 -14.45047 -14.04897 -13.77574 -13.71778 -13.55409 -13.23304 -13.19088 -12.41348 -12.31265 -12.19301 -11.83077 -11.72560 -11.65883 -11.33838 -11.24135 -11.04571 -10.92584 -10.89736 -10.36349 -10.11717 -9.97198 -9.45581 -9.34232 -8.96932 -8.74105 -8.53120 -8.42222 -7.79494 -6.34702 -4.40275 1.27798 1.35314 2.55486 3.10079 3.16452 3.24554 3.27989 3.36770 4.00654 4.10823 4.23597 4.45355 4.59641 4.61584 4.72797 4.73639 4.83362 4.97930 5.02062 5.03728 5.21410 5.26292 5.34252 5.35732 5.36326 5.43583 5.53060 5.66077 5.75497 5.87168 5.90704 5.93460 6.09396 6.13594 6.38831 6.50619 6.78836 6.86084 6.90058 6.96720 7.14544 7.34337 7.57900 7.74102 7.81983 8.12732 8.37358 8.68193 9.26417 10.74305 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.003117 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.181705 B = 8981.652326 C =10661.806294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.064 3.936 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.531 4.531 8 H 0.070 0.930 9 C 0.255 3.745 10 N -0.317 5.317 11 C 0.056 3.944 12 C -0.248 4.248 13 C 0.145 3.855 14 N -0.683 5.683 15 C 0.062 3.938 16 C -0.152 4.152 17 C 0.063 3.937 18 F -0.220 7.220 19 C 0.084 3.916 20 C 0.069 3.931 21 C -0.149 4.149 22 C 0.094 3.906 23 N -0.494 5.494 24 C 0.095 3.905 25 C -0.150 4.150 26 N -0.258 5.258 27 H 0.268 0.732 28 H 0.048 0.952 29 H 0.056 0.944 30 H 0.166 0.834 31 H 0.075 0.925 32 H 0.032 0.968 33 H 0.342 0.658 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 -18.113 3.493 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.138 3.862 10 N -0.097 5.097 11 C -0.094 4.094 12 C -0.261 4.261 13 C 0.016 3.984 14 N -0.314 5.314 15 C -0.068 4.068 16 C -0.190 4.190 17 C 0.008 3.992 18 F -0.202 7.202 19 C -0.079 4.079 20 C 0.059 3.941 21 C -0.170 4.170 22 C -0.063 4.063 23 N -0.203 5.203 24 C -0.061 4.061 25 C -0.171 4.171 26 N -0.082 5.082 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.183 0.817 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.160 0.840 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.170 0.830 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.045 -17.250 1.853 19.123 hybrid contribution -1.304 0.780 1.784 2.344 sum 6.740 -16.470 3.637 18.164 Atomic orbital electron populations 1.69920 1.06066 1.27700 1.49516 1.24941 0.94993 0.99631 0.94399 0.86268 0.80109 0.82328 0.77827 1.19481 1.20566 1.20687 1.21257 0.94017 0.89228 1.52424 0.91204 1.19816 0.85658 0.81319 0.99419 1.49443 1.23107 1.19228 1.17877 1.22268 0.99818 0.90472 0.96840 1.19581 1.03036 1.01646 1.01805 1.20086 0.99995 0.85745 0.92610 1.60508 1.25552 1.00650 1.44692 1.21798 1.01126 0.89373 0.94498 1.22135 1.03029 0.93127 1.00713 1.21942 1.00811 0.82852 0.93625 1.92768 1.92234 1.56726 1.78422 1.20259 0.96907 0.94722 0.96000 1.18052 0.90689 0.93123 0.92220 1.22058 0.93881 0.99908 1.01197 1.22521 0.97351 0.96404 0.89992 1.67587 1.27492 1.16708 1.08560 1.22574 0.89074 0.94384 1.00086 1.22219 1.00213 1.00348 0.94352 1.77703 1.00571 1.16109 1.13834 0.92260 0.93459 0.92593 0.81718 0.90697 0.94978 0.83966 0.90819 0.95243 0.90922 0.89837 0.90710 0.90964 0.84974 0.83116 0.82993 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 13.29 55.43 0.74 -23.90 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 20.96 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.29 9.23 -34.44 -0.32 -14.61 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.26 6.15 6.26 -5.19 -0.03 6.11 16 10 N -0.32 -6.78 3.67 -62.58 -0.23 -7.00 16 11 C 0.06 0.97 11.32 -17.26 -0.20 0.77 16 12 C -0.25 -3.91 5.56 -104.75 -0.58 -4.49 16 13 C 0.14 1.71 5.70 -4.97 -0.03 1.68 16 14 N -0.68 -7.41 6.52 -115.06 -0.75 -8.16 16 15 C 0.06 0.50 5.68 -3.83 -0.02 0.48 16 16 C -0.15 -1.21 5.93 -26.73 -0.16 -1.37 16 17 C 0.06 0.44 7.55 37.16 0.28 0.73 16 18 F -0.22 -2.26 17.36 2.25 0.04 -2.22 16 19 C 0.08 1.53 6.72 -82.78 -0.56 0.97 16 20 C 0.07 1.10 5.77 -104.58 -0.60 0.49 16 21 C -0.15 -1.99 9.01 -39.11 -0.35 -2.35 16 22 C 0.09 1.17 11.17 -17.61 -0.20 0.98 16 23 N -0.49 -6.92 10.35 -13.35 -0.14 -7.06 16 24 C 0.10 1.28 11.17 -17.61 -0.20 1.08 16 25 C -0.15 -2.25 9.89 -39.11 -0.39 -2.64 16 26 N -0.26 -5.61 12.44 33.42 0.42 -5.19 16 27 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.32 8.07 -51.93 -0.42 0.90 16 30 H 0.17 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.07 0.85 5.82 -51.92 -0.30 0.54 16 32 H 0.03 0.34 8.11 -51.93 -0.42 -0.08 16 33 H 0.34 3.81 8.66 -39.29 -0.34 3.47 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.13 1.55 6.29 -52.49 -0.33 1.22 16 41 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 43 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -30.50 373.21 -8.78 -39.28 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -6.01 Total: 3.25 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -3.45 Total: -10.54 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.03 Total: -51.32 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.50 -8.78 -39.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564519043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.730 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds