Wall clock time and date at job start Tue Mar 31 2020 12:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99641 * 2 1 4 4 H 1.48502 * 109.46807 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46914 * 299.99905 * 3 2 1 6 6 H 1.48497 * 109.47110 * 60.00237 * 3 2 1 7 7 C 1.37872 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00159 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00084 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46962 * 179.97438 * 9 7 2 11 11 C 1.35055 * 125.93281 * 124.99968 * 10 9 7 12 12 C 1.35066 * 107.98761 * 180.02562 * 11 10 9 13 13 C 1.50704 * 126.06972 * 180.02562 * 12 11 10 14 14 N 1.46906 * 109.46925 * 105.39675 * 13 12 11 15 15 C 1.46897 * 110.99999 * 184.74391 * 14 13 12 16 16 C 1.52990 * 109.47210 * 179.97438 * 15 14 13 17 17 C 1.53003 * 109.47223 * 179.97438 * 16 15 14 18 18 F 1.39901 * 109.47111 * 180.02562 * 17 16 15 19 19 C 1.40865 * 107.85508 * 0.02562 * 12 11 10 20 20 C 1.48360 * 126.04227 * 180.02562 * 19 12 11 21 21 C 1.39774 * 120.90310 * 317.14652 * 20 19 12 22 22 C 1.37959 * 119.02115 * 179.76027 * 21 20 19 23 23 N 1.31944 * 120.88130 * 0.52895 * 22 21 20 24 24 C 1.31940 * 121.99743 * 359.74652 * 23 22 21 25 25 C 1.37961 * 120.88536 * 359.97164 * 24 23 22 26 26 N 1.31655 * 107.91400 * 359.97438 * 19 12 11 27 27 H 0.96998 * 120.00310 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.47511 * 59.99110 * 9 7 2 29 29 H 1.09004 * 109.46469 * 299.99283 * 9 7 2 30 30 H 1.07999 * 126.00451 * 0.02562 * 11 10 9 31 31 H 1.09007 * 109.46946 * 225.38896 * 13 12 11 32 32 H 1.08991 * 109.47346 * 345.38980 * 13 12 11 33 33 H 1.00905 * 110.99402 * 308.69381 * 14 13 12 34 34 H 1.09003 * 109.46903 * 300.00067 * 15 14 13 35 35 H 1.09003 * 109.47073 * 59.99182 * 15 14 13 36 36 H 1.09003 * 109.47704 * 300.00142 * 16 15 14 37 37 H 1.09003 * 109.47309 * 59.99892 * 16 15 14 38 38 H 1.09000 * 109.47060 * 300.00042 * 17 16 15 39 39 H 1.09002 * 109.46876 * 60.00457 * 17 16 15 40 40 H 1.08000 * 120.48944 * 0.02562 * 21 20 19 41 41 H 1.07994 * 119.56453 * 180.27256 * 22 21 20 42 42 H 1.07998 * 119.55369 * 179.97438 * 24 23 22 43 43 H 1.07994 * 120.48501 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.2415 -4.6226 0.8963 12 6 3.2583 -5.4438 0.5558 13 6 3.6646 -6.7008 1.2809 14 7 3.2361 -7.8732 0.5063 15 6 3.5151 -9.1171 1.2361 16 6 3.0556 -10.3131 0.4000 17 6 3.3468 -11.6087 1.1599 18 9 2.9271 -12.7023 0.3950 19 6 3.8716 -4.9165 -0.5976 20 6 5.0318 -5.5009 -1.3140 21 6 6.1279 -6.0089 -0.6110 22 6 7.1839 -6.5481 -1.3163 23 7 7.1722 -6.5784 -2.6354 24 6 6.1599 -6.1046 -3.3366 25 6 5.0612 -5.5532 -2.7104 26 7 3.2324 -3.8140 -0.9280 27 1 -0.4850 0.8400 0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5566 0.8904 30 1 1.5760 -4.7510 1.7372 31 1 4.7482 -6.7188 1.3977 32 1 3.1929 -6.7222 2.2633 33 1 2.2590 -7.8082 0.2628 34 1 4.5858 -9.1952 1.4249 35 1 2.9786 -9.1098 2.1849 36 1 1.9848 -10.2348 0.2115 37 1 3.5918 -10.3205 -0.5490 38 1 4.4176 -11.6868 1.3479 39 1 2.8108 -11.6016 2.1089 40 1 6.1461 -5.9836 0.4686 41 1 8.0333 -6.9471 -0.7819 42 1 6.1919 -6.1491 -4.4152 43 1 4.2360 -5.1677 -3.2907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564519043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:48 Heat of formation + Delta-G solvation = 28.472826 kcal Electronic energy + Delta-G solvation = -25480.634958 eV Core-core repulsion = 21668.356447 eV Total energy + Delta-G solvation = -3812.278511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.53177 -42.17932 -40.65443 -37.67844 -35.88048 -34.54257 -33.70933 -32.37108 -32.09068 -30.94944 -29.11025 -26.65555 -25.78608 -24.59776 -24.20023 -23.41052 -22.49353 -21.47580 -20.80703 -18.70827 -18.12691 -17.39433 -17.19560 -17.00533 -16.84505 -16.59134 -16.37330 -16.03185 -16.01653 -15.76489 -15.08562 -14.89087 -14.75678 -14.62975 -14.47097 -14.25006 -14.05227 -13.73201 -13.56388 -13.13914 -12.86048 -12.69386 -12.60280 -12.43616 -12.30551 -12.24329 -11.92182 -11.75510 -11.54569 -11.46550 -10.90295 -10.75832 -10.42046 -10.01423 -9.94071 -9.32301 -9.14573 -8.38763 -6.52403 0.10763 0.30361 1.15306 1.33090 1.35837 1.47818 1.77317 1.87940 2.30872 2.93631 3.00240 3.25469 3.49812 3.65944 3.83809 3.89197 3.99091 4.07392 4.13486 4.21084 4.25011 4.27565 4.29865 4.38076 4.48628 4.61398 4.67255 4.74934 4.80033 4.85213 4.88543 4.95229 5.03454 5.08732 5.13702 5.18897 5.30659 5.45525 5.53893 5.70732 5.80687 5.81971 6.15491 6.25971 6.49096 6.59258 6.93182 7.07918 7.18162 8.69439 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.012479 B = 0.003117 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.181705 B = 8981.652326 C =10661.806294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.020 3.980 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.272 3.728 10 N -0.346 5.346 11 C 0.051 3.949 12 C -0.235 4.235 13 C 0.152 3.848 14 N -0.695 5.695 15 C 0.066 3.934 16 C -0.146 4.146 17 C 0.060 3.940 18 F -0.240 7.240 19 C 0.089 3.911 20 C 0.044 3.956 21 C -0.144 4.144 22 C 0.100 3.900 23 N -0.505 5.505 24 C 0.097 3.903 25 C -0.166 4.166 26 N -0.316 5.316 27 H 0.273 0.727 28 H 0.019 0.981 29 H 0.058 0.942 30 H 0.196 0.804 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.339 0.661 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.151 0.849 41 H 0.188 0.812 42 H 0.177 0.823 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.939 -19.500 5.053 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.068 0.932 9 C 0.153 3.847 10 N -0.126 5.126 11 C -0.097 4.097 12 C -0.247 4.247 13 C 0.022 3.978 14 N -0.326 5.326 15 C -0.063 4.063 16 C -0.184 4.184 17 C 0.005 3.995 18 F -0.222 7.222 19 C -0.075 4.075 20 C 0.034 3.966 21 C -0.165 4.165 22 C -0.057 4.057 23 N -0.215 5.215 24 C -0.059 4.059 25 C -0.187 4.187 26 N -0.140 5.140 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.213 0.787 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.169 0.831 41 H 0.205 0.795 42 H 0.194 0.806 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.835 -18.666 3.421 21.374 hybrid contribution -1.781 1.078 1.279 2.443 sum 8.054 -17.588 4.700 19.907 Atomic orbital electron populations 1.69989 1.07140 1.28759 1.49903 1.25705 0.95821 1.02653 0.93849 0.85340 0.78375 0.78554 0.78417 1.20079 1.19945 1.19215 1.21392 0.93239 0.91029 1.52852 0.93197 1.19306 0.85768 0.81662 0.97992 1.49111 1.23751 1.20051 1.19670 1.22906 1.00587 0.89355 0.96842 1.20022 1.01498 1.02488 1.00707 1.20102 1.00746 0.84119 0.92796 1.60466 1.25406 1.01334 1.45393 1.21814 1.01954 0.87813 0.94674 1.22046 1.02337 0.93879 1.00160 1.22126 1.02243 0.81374 0.93748 1.92729 1.92540 1.57786 1.79118 1.20790 0.96767 0.93575 0.96392 1.18227 0.91100 0.94524 0.92728 1.22249 0.93067 0.99074 1.02112 1.23112 0.97868 0.95055 0.89621 1.67691 1.27474 1.16917 1.09442 1.22906 0.88243 0.93403 1.01299 1.22249 1.00770 1.01350 0.94343 1.77616 1.02110 1.18647 1.15592 0.91779 0.96304 0.92391 0.78718 0.89615 0.93035 0.84382 0.89786 0.93643 0.91603 0.91573 0.88928 0.88971 0.83130 0.79469 0.80600 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.49 13.29 21.45 0.28 -51.20 16 2 C 0.02 1.11 5.46 84.65 0.46 1.58 16 3 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.51 9.23 25.60 0.24 -30.27 16 8 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 9 C 0.27 13.71 6.26 85.63 0.54 14.25 16 10 N -0.35 -15.33 3.67 -351.92 -1.29 -16.62 16 11 C 0.05 1.75 11.32 83.47 0.94 2.70 16 12 C -0.23 -7.19 5.56 -19.95 -0.11 -7.30 16 13 C 0.15 3.17 5.70 85.56 0.49 3.66 16 14 N -0.69 -13.58 6.52 -517.93 -3.38 -16.96 16 15 C 0.07 0.89 5.68 86.30 0.49 1.38 16 16 C -0.15 -2.07 5.93 30.59 0.18 -1.89 16 17 C 0.06 0.70 7.55 71.98 0.54 1.25 16 18 F -0.24 -4.62 17.36 44.97 0.78 -3.84 16 19 C 0.09 3.24 6.72 42.51 0.29 3.53 16 20 C 0.04 1.38 5.77 -19.84 -0.11 1.27 16 21 C -0.14 -3.53 9.01 22.58 0.20 -3.33 16 22 C 0.10 2.20 11.17 84.61 0.95 3.15 16 23 N -0.51 -13.05 10.35 -196.14 -2.03 -15.08 16 24 C 0.10 2.51 11.17 84.61 0.95 3.46 16 25 C -0.17 -5.01 9.89 22.57 0.22 -4.79 16 26 N -0.32 -14.33 12.44 -48.17 -0.60 -14.93 16 27 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 28 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 2.84 8.07 -2.38 -0.02 2.82 16 30 H 0.20 5.16 8.06 -2.91 -0.02 5.14 16 31 H 0.09 1.63 5.82 -2.38 -0.01 1.62 16 32 H 0.05 0.90 8.11 -2.39 -0.02 0.88 16 33 H 0.34 7.06 8.66 -89.69 -0.78 6.28 16 34 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.15 3.05 6.29 -2.91 -0.02 3.04 16 41 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 42 H 0.18 3.49 8.06 -2.91 -0.02 3.47 16 43 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 Total: -1.00 -68.30 373.21 2.30 -66.00 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.25 Total: 18.55 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 6.26 Total: -11.37 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -7.01 Total: -114.79 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.78 Total: -3.84 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -68.30 2.30 -66.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564519043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.475 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds