Wall clock time and date at job start Tue Mar 31 2020 13:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38259 * 119.99911 * 2 1 4 4 C 1.38220 * 119.99885 * 179.97438 * 3 2 1 5 5 C 1.38248 * 119.99782 * 0.02562 * 4 3 2 6 6 C 1.38217 * 120.00520 * 359.73889 * 5 4 3 7 7 C 1.38211 * 119.99972 * 179.97438 * 2 1 3 8 8 C 1.50700 * 120.00154 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.47075 * 34.00640 * 8 7 2 10 10 C 1.53007 * 109.46768 * 274.01083 * 8 7 2 11 11 O 1.42896 * 109.47433 * 305.00110 * 10 8 7 12 12 N 1.46497 * 109.47488 * 154.01333 * 8 7 2 13 13 C 1.34776 * 120.00117 * 207.50596 * 12 8 7 14 14 O 1.21580 * 120.00134 * 0.02562 * 13 12 8 15 15 N 1.34774 * 119.99954 * 179.97438 * 13 12 8 16 16 C 1.46496 * 120.00102 * 180.02562 * 15 13 12 17 17 C 1.53001 * 109.47203 * 184.91820 * 16 15 13 18 18 C 1.50696 * 115.55079 * 56.46753 * 17 16 15 19 19 H 1.07997 * 120.00070 * 264.73694 * 18 17 16 20 20 C 1.37878 * 119.99715 * 84.73129 * 18 17 16 21 21 N 1.31513 * 120.00304 * 1.87728 * 20 18 17 22 22 Si 1.86803 * 119.99717 * 181.87347 * 20 18 17 23 23 H 1.48498 * 109.47189 * 60.00679 * 22 20 18 24 24 H 1.48504 * 109.46958 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47376 * 299.99947 * 22 20 18 26 26 C 1.53003 * 117.49930 * 270.79618 * 17 16 15 27 27 C 1.53004 * 117.49919 * 202.13688 * 17 16 15 28 28 H 1.09000 * 109.46950 * 270.01967 * 1 2 3 29 29 H 1.09002 * 109.47043 * 30.02297 * 1 2 3 30 30 H 1.09003 * 109.46992 * 150.01767 * 1 2 3 31 31 H 1.07999 * 120.00057 * 0.02562 * 3 2 1 32 32 H 1.07991 * 119.99632 * 180.02562 * 4 3 2 33 33 H 1.07997 * 120.00097 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.00242 * 180.27831 * 6 5 4 35 35 H 1.08998 * 109.47107 * 184.99423 * 10 8 7 36 36 H 1.09005 * 109.46926 * 64.99802 * 10 8 7 37 37 H 0.96695 * 114.00421 * 179.97438 * 11 10 8 38 38 H 0.96999 * 119.99517 * 27.50909 * 12 8 7 39 39 H 0.97008 * 119.99911 * 0.02562 * 15 13 12 40 40 H 1.08997 * 109.47062 * 304.92221 * 16 15 13 41 41 H 1.08999 * 109.47198 * 64.92033 * 16 15 13 42 42 H 0.97001 * 119.99949 * 185.02038 * 21 20 18 43 43 H 1.09006 * 117.49790 * 0.02562 * 26 17 16 44 44 H 1.09000 * 117.49926 * 145.02042 * 26 17 16 45 45 H 1.08994 * 117.49962 * 214.97657 * 27 17 16 46 46 H 1.09002 * 117.49855 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5807 -1.1970 0.0055 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5021 0.0005 9 1 0.5255 -2.3909 -0.5746 10 6 1.1017 -2.8929 1.4396 11 8 2.2969 -2.9250 2.2222 12 7 2.2759 -3.5459 -0.6041 13 6 1.6971 -4.5982 -1.2158 14 8 0.4852 -4.6810 -1.2662 15 7 2.4619 -5.5583 -1.7724 16 6 1.8329 -6.7018 -2.4378 17 6 2.9117 -7.6965 -2.8711 18 6 3.8101 -8.2010 -1.7714 19 1 4.7622 -7.7244 -1.5906 20 6 3.4164 -9.2709 -0.9960 21 7 2.2737 -9.8746 -1.2398 22 14 4.5062 -9.8631 0.4008 23 1 4.6986 -8.7627 1.3792 24 1 3.8620 -11.0188 1.0754 25 1 5.8243 -10.2792 -0.1419 26 6 3.5300 -7.5085 -4.2580 27 6 2.5642 -8.6680 -4.0009 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6583 2.1327 0.0004 32 1 4.1204 2.1326 0.0010 33 1 5.3517 0.0000 0.0014 34 1 4.1207 -2.1323 0.0100 35 1 0.6358 -3.8783 1.4472 36 1 0.4116 -2.1614 1.8601 37 1 2.1546 -3.1657 3.1478 38 1 3.2428 -3.4797 -0.5641 39 1 3.4289 -5.4920 -1.7325 40 1 1.1445 -7.1900 -1.7480 41 1 1.2847 -6.3559 -3.3141 42 1 1.9621 -10.5793 -0.6506 43 1 3.1684 -6.6759 -4.8616 44 1 4.5864 -7.7501 -4.3750 45 1 2.9857 -9.6718 -3.9490 46 1 1.5668 -8.5988 -4.4352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569664877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:48 Heat of formation + Delta-G solvation = -52.211515 kcal Electronic energy + Delta-G solvation = -26880.234802 eV Core-core repulsion = 23155.625110 eV Total energy + Delta-G solvation = -3724.609692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44501 -40.25949 -38.59338 -37.81077 -35.66289 -34.94619 -33.97103 -33.82284 -31.94708 -29.51290 -27.89772 -27.73986 -26.90674 -24.44036 -23.13494 -22.85459 -21.55839 -21.40004 -21.11291 -19.43135 -18.37176 -18.25350 -17.52561 -16.87024 -16.67350 -16.47391 -16.13725 -15.96176 -15.68535 -15.56010 -15.10222 -14.88349 -14.73039 -14.45093 -14.09372 -13.92172 -13.82376 -13.52848 -13.41078 -13.03286 -13.00892 -12.90014 -12.79923 -12.60474 -12.39915 -12.01253 -11.87682 -11.71437 -11.47287 -11.27746 -10.96777 -10.92560 -10.41016 -10.33121 -10.03024 -9.68575 -9.60058 -9.44249 -8.08996 -6.22034 0.44247 0.52955 1.43212 1.43853 1.50311 1.79570 2.23333 2.43058 2.87624 3.19567 3.31762 3.34599 3.59741 3.63730 3.96342 4.05869 4.15565 4.21117 4.27138 4.39593 4.42404 4.51581 4.56212 4.66962 4.68945 4.72793 4.74267 4.84178 4.84822 4.96233 5.01405 5.04573 5.15615 5.29224 5.30189 5.45117 5.56641 5.62045 5.64538 5.66050 5.72882 5.78210 5.80180 6.10717 6.16708 6.37954 6.83354 6.84864 7.19762 7.47421 7.66524 8.98649 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.003284 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.976271 B = 8523.383462 C = 8905.731734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C -0.124 4.124 4 C -0.121 4.121 5 C -0.132 4.132 6 C -0.107 4.107 7 C -0.093 4.093 8 C 0.204 3.796 9 H 0.100 0.900 10 C 0.075 3.925 11 O -0.574 6.574 12 N -0.727 5.727 13 C 0.698 3.302 14 O -0.642 6.642 15 N -0.713 5.713 16 C 0.200 3.800 17 C 0.004 3.996 18 C -0.501 4.501 19 H 0.062 0.938 20 C 0.026 3.974 21 N -0.907 5.907 22 Si 0.947 3.053 23 H -0.274 1.274 24 H -0.292 1.292 25 H -0.269 1.269 26 C -0.179 4.179 27 C -0.154 4.154 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.392 0.608 38 H 0.404 0.596 39 H 0.405 0.595 40 H 0.025 0.975 41 H 0.036 0.964 42 H 0.258 0.742 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 22.511 4.798 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.150 4.150 6 C -0.126 4.126 7 C -0.093 4.093 8 C 0.098 3.902 9 H 0.118 0.882 10 C -0.005 4.005 11 O -0.381 6.381 12 N -0.384 5.384 13 C 0.398 3.602 14 O -0.525 6.525 15 N -0.366 5.366 16 C 0.075 3.925 17 C 0.003 3.997 18 C -0.539 4.539 19 H 0.080 0.920 20 C -0.175 4.175 21 N -0.545 5.545 22 Si 0.774 3.226 23 H -0.199 1.199 24 H -0.218 1.218 25 H -0.194 1.194 26 C -0.216 4.216 27 C -0.192 4.192 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.135 0.865 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.241 0.759 38 H 0.242 0.758 39 H 0.240 0.760 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.067 0.933 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.464 22.378 4.191 22.771 hybrid contribution 0.794 -1.257 1.358 2.013 sum 1.259 21.121 5.549 21.874 Atomic orbital electron populations 1.20955 0.90222 1.03445 1.03244 1.19917 0.96951 0.92316 0.99716 1.21278 0.94630 0.97641 1.00671 1.21462 0.94505 0.98718 0.99150 1.21356 1.00871 0.92213 1.00540 1.20934 0.93500 0.98665 0.99465 1.19559 0.94214 0.93084 1.02471 1.19797 0.94070 0.83988 0.92306 0.88213 1.22474 0.87354 0.99581 0.91066 1.86440 1.32254 1.93082 1.26319 1.45061 1.10297 1.22667 1.60342 1.16143 0.85134 0.80462 0.78443 1.90819 1.13935 1.80186 1.67595 1.44886 1.09866 1.22344 1.59501 1.20394 0.94192 0.84248 0.93695 1.19067 0.96248 0.96304 0.88095 1.20601 1.03458 1.13886 1.15961 0.91968 1.25670 0.96347 0.95979 0.99492 1.70107 1.21895 1.24870 1.37585 0.85788 0.79317 0.77620 0.79914 1.19898 1.21758 1.19416 1.23038 0.98024 0.99862 1.00660 1.22388 0.97961 0.94435 1.04435 0.89884 0.89737 0.92169 0.83770 0.83730 0.84446 0.86540 0.95083 0.90690 0.75881 0.75795 0.75986 0.95645 0.94534 0.93326 0.89272 0.89736 0.91769 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.52 71.24 0.68 -1.29 16 2 C -0.09 -1.76 5.88 -19.86 -0.12 -1.88 16 3 C -0.12 -2.07 9.70 22.27 0.22 -1.86 16 4 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 5 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 6 C -0.11 -2.41 8.92 22.27 0.20 -2.21 16 7 C -0.09 -2.18 4.67 -19.87 -0.09 -2.27 16 8 C 0.20 5.58 2.14 44.25 0.09 5.67 16 9 H 0.10 2.96 5.47 -2.39 -0.01 2.95 16 10 C 0.07 1.88 6.86 71.98 0.49 2.37 16 11 O -0.57 -13.62 12.82 -148.98 -1.91 -15.53 16 12 N -0.73 -22.63 4.92 -461.42 -2.27 -24.90 16 13 C 0.70 27.91 8.55 179.06 1.53 29.44 16 14 O -0.64 -30.25 15.96 -3.97 -0.06 -30.32 16 15 N -0.71 -28.92 5.37 -478.56 -2.57 -31.49 16 16 C 0.20 9.34 5.55 86.38 0.48 9.82 16 17 C 0.00 0.17 1.53 -52.93 -0.08 0.09 16 18 C -0.50 -25.77 8.31 25.60 0.21 -25.55 16 19 H 0.06 3.08 7.81 -2.91 -0.02 3.06 16 20 C 0.03 1.38 5.43 84.66 0.46 1.84 16 21 N -0.91 -51.77 12.72 21.45 0.27 -51.50 16 22 Si 0.95 42.68 29.54 68.60 2.03 44.71 16 23 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.18 -7.20 9.93 30.62 0.30 -6.90 16 27 C -0.15 -7.10 9.26 30.62 0.28 -6.82 16 28 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 30 H 0.06 1.13 6.01 -2.39 -0.01 1.11 16 31 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.14 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.12 2.61 6.12 -2.91 -0.02 2.59 16 35 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 36 H 0.08 1.49 8.06 -2.38 -0.02 1.47 16 37 H 0.39 6.13 9.12 -74.06 -0.68 5.46 16 38 H 0.40 11.10 6.30 -92.71 -0.58 10.52 16 39 H 0.41 14.88 8.20 -92.70 -0.76 14.12 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 42 H 0.26 14.29 8.32 -92.71 -0.77 13.51 16 43 H 0.09 3.18 8.14 -2.38 -0.02 3.16 16 44 H 0.08 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 46 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -68.30 381.76 -0.41 -68.71 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: -1.00 Total: 43.82 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 5.11 Total: -3.50 kcal Atomic # 7 Polarization: -103.32 SS G_CDS: -4.57 Total: -107.88 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.97 Total: -45.85 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -68.30 -0.41 -68.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569664877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.500 kcal (2) G-P(sol) polarization free energy of solvation -68.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds