Wall clock time and date at job start Tue Mar 31 2020 13:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 120.00052 * 2 1 4 4 C 1.38214 * 119.99990 * 180.25630 * 3 2 1 5 5 C 1.38261 * 119.99762 * 359.50930 * 4 3 2 6 6 C 1.38206 * 119.99881 * 0.44368 * 5 4 3 7 7 C 1.38210 * 119.99621 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.00274 * 359.97438 * 7 2 1 9 9 H 1.08995 * 109.47238 * 325.00338 * 8 7 2 10 10 C 1.53004 * 109.46595 * 85.00312 * 8 7 2 11 11 O 1.42899 * 109.47229 * 55.00527 * 10 8 7 12 12 N 1.46494 * 109.47224 * 205.00013 * 8 7 2 13 13 C 1.34780 * 120.00251 * 155.00068 * 12 8 7 14 14 O 1.21588 * 119.99569 * 354.93154 * 13 12 8 15 15 N 1.34773 * 120.00355 * 174.93224 * 13 12 8 16 16 C 1.46500 * 120.00283 * 185.08662 * 15 13 12 17 17 C 1.52989 * 109.47403 * 184.72491 * 16 15 13 18 18 C 1.50706 * 115.55135 * 64.84689 * 17 16 15 19 19 H 1.08002 * 120.00032 * 266.78142 * 18 17 16 20 20 C 1.37877 * 120.00032 * 86.77652 * 18 17 16 21 21 N 1.31512 * 119.99764 * 178.76571 * 20 18 17 22 22 Si 1.86794 * 119.99996 * 358.76812 * 20 18 17 23 23 H 1.48498 * 109.47150 * 91.33685 * 22 20 18 24 24 H 1.48503 * 109.47110 * 211.33573 * 22 20 18 25 25 H 1.48501 * 109.47262 * 331.33678 * 22 20 18 26 26 C 1.53000 * 117.50368 * 279.17582 * 17 16 15 27 27 C 1.53000 * 117.50059 * 210.51447 * 17 16 15 28 28 H 1.09005 * 109.47417 * 89.99740 * 1 2 3 29 29 H 1.09003 * 109.47513 * 209.99973 * 1 2 3 30 30 H 1.09000 * 109.47085 * 330.00178 * 1 2 3 31 31 H 1.08006 * 120.00050 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00193 * 179.72495 * 4 3 2 33 33 H 1.07996 * 119.99874 * 180.28057 * 5 4 3 34 34 H 1.08005 * 119.99895 * 179.82476 * 6 5 4 35 35 H 1.09007 * 109.46760 * 174.99951 * 10 8 7 36 36 H 1.08997 * 109.47342 * 294.99744 * 10 8 7 37 37 H 0.96698 * 113.99959 * 180.02562 * 11 10 8 38 38 H 0.97005 * 120.00208 * 335.00786 * 12 8 7 39 39 H 0.97002 * 119.99827 * 5.08349 * 15 13 12 40 40 H 1.09002 * 109.47003 * 304.72794 * 16 15 13 41 41 H 1.09003 * 109.46999 * 64.72309 * 16 15 13 42 42 H 0.97001 * 120.00067 * 179.97438 * 21 20 18 43 43 H 1.09002 * 117.49204 * 359.97438 * 26 17 16 44 44 H 1.09002 * 117.50090 * 145.01872 * 26 17 16 45 45 H 1.09006 * 117.50231 * 214.98154 * 27 17 16 46 46 H 1.08999 * 117.49767 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0017 9 1 0.5340 -2.3954 0.5913 10 6 1.0801 -2.8818 -1.4350 11 8 2.2635 -2.9079 -2.2355 12 7 2.2845 -3.5505 0.5858 13 6 1.7151 -4.6323 1.1533 14 8 0.5059 -4.6955 1.2633 15 7 2.4861 -5.6440 1.5989 16 6 1.8646 -6.8668 2.1134 17 6 2.9482 -7.7989 2.6590 18 6 3.7041 -7.2856 3.8575 19 1 4.6308 -6.7479 3.7217 20 6 3.2125 -7.5024 5.1273 21 7 3.8844 -7.0757 6.1742 22 14 1.5923 -8.4023 5.3605 23 1 1.8511 -9.8567 5.5118 24 1 0.9130 -7.8911 6.5781 25 1 0.7246 -8.1744 4.1771 26 6 3.7191 -8.6529 1.6503 27 6 2.6909 -9.3049 2.5781 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1326 -0.0004 32 1 4.1204 2.1326 -0.0098 33 1 5.3516 -0.0001 -0.0001 34 1 4.1206 -2.1324 0.0015 35 1 0.6141 -3.8672 -1.4433 36 1 0.3839 -2.1472 -1.8396 37 1 2.1074 -3.1415 -3.1608 38 1 3.2506 -3.4661 0.5642 39 1 3.4524 -5.5625 1.5788 40 1 1.1684 -6.6120 2.9125 41 1 1.3264 -7.3673 1.3084 42 1 3.5384 -7.2279 7.0675 43 1 3.4539 -8.5508 0.5980 44 1 4.7728 -8.8437 1.8537 45 1 3.0686 -9.9246 3.3915 46 1 1.7494 -9.6316 2.1365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569664878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:52 Heat of formation + Delta-G solvation = -25.594112 kcal Electronic energy + Delta-G solvation = -26877.309143 eV Core-core repulsion = 23153.853668 eV Total energy + Delta-G solvation = -3723.455475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.34891 -39.10894 -37.31698 -36.76868 -34.56679 -33.43575 -33.01649 -32.10575 -30.96800 -28.54788 -27.01257 -26.45677 -25.05459 -23.52724 -22.14055 -21.69769 -20.60879 -20.06164 -19.25621 -18.11367 -17.42739 -16.91377 -16.21230 -15.88671 -15.34170 -15.21984 -14.88242 -14.73895 -14.67296 -14.05741 -13.97366 -13.84494 -13.34851 -13.19032 -13.12482 -12.78673 -12.70529 -12.45797 -12.29780 -12.19845 -11.98525 -11.74539 -11.14101 -11.10067 -10.88490 -10.74687 -10.50443 -10.16087 -10.12400 -9.80969 -9.58071 -9.17085 -9.00410 -8.84415 -8.65970 -8.61395 -8.57348 -8.13871 -6.13522 -4.17884 1.24710 1.32222 3.08350 3.30688 3.41059 3.47027 3.62662 3.71570 4.18332 4.42420 4.50119 4.61025 4.71434 4.80936 4.92880 5.02072 5.11155 5.14561 5.16074 5.29771 5.34663 5.42960 5.53948 5.60364 5.63644 5.70503 5.73115 5.95185 6.02337 6.03733 6.08411 6.26954 6.35342 6.42960 6.43023 6.46726 6.51826 6.71230 6.78412 6.90759 7.02408 7.10292 7.20706 7.43853 7.51588 7.69975 8.43143 8.55003 8.86402 9.09336 9.49709 10.97904 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.003245 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.032378 B = 8626.458365 C = 8982.142847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.091 4.091 7 C -0.078 4.078 8 C 0.207 3.793 9 H 0.112 0.888 10 C 0.069 3.931 11 O -0.563 6.563 12 N -0.741 5.741 13 C 0.702 3.298 14 O -0.606 6.606 15 N -0.718 5.718 16 C 0.175 3.825 17 C -0.015 4.015 18 C -0.489 4.489 19 H 0.077 0.923 20 C 0.080 3.920 21 N -0.896 5.896 22 Si 0.879 3.121 23 H -0.279 1.279 24 H -0.294 1.294 25 H -0.256 1.256 26 C -0.178 4.178 27 C -0.192 4.192 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.375 0.625 38 H 0.396 0.604 39 H 0.399 0.601 40 H 0.065 0.935 41 H 0.038 0.962 42 H 0.265 0.735 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.240 13.573 -16.681 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.080 4.080 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.141 4.141 6 C -0.109 4.109 7 C -0.079 4.079 8 C 0.101 3.899 9 H 0.130 0.870 10 C -0.010 4.010 11 O -0.368 6.368 12 N -0.399 5.399 13 C 0.402 3.598 14 O -0.487 6.487 15 N -0.370 5.370 16 C 0.051 3.949 17 C -0.017 4.017 18 C -0.526 4.526 19 H 0.095 0.905 20 C -0.123 4.123 21 N -0.533 5.533 22 Si 0.707 3.293 23 H -0.205 1.205 24 H -0.220 1.220 25 H -0.180 1.180 26 C -0.216 4.216 27 C -0.230 4.230 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.221 0.779 38 H 0.233 0.767 39 H 0.233 0.767 40 H 0.083 0.917 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.108 0.892 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.081 13.636 -15.794 21.262 hybrid contribution -0.119 -0.593 -0.207 0.639 sum -4.200 13.044 -16.001 21.066 Atomic orbital electron populations 1.20922 0.91299 1.03328 1.02354 1.19645 0.95953 0.92389 1.00009 1.20944 0.94273 0.97147 1.01529 1.21108 0.94289 0.97989 1.00408 1.21104 0.99900 0.92405 1.00718 1.20831 0.93468 0.98068 0.98580 1.19603 0.93990 0.93480 1.00809 1.19687 0.94440 0.83652 0.92161 0.87028 1.22612 0.87129 1.00264 0.91008 1.86506 1.32704 1.93312 1.24247 1.45147 1.09761 1.21296 1.63663 1.15980 0.85576 0.79955 0.78249 1.90855 1.12672 1.81044 1.64082 1.44967 1.09660 1.16185 1.66185 1.21015 0.94747 0.82967 0.96193 1.19629 0.96416 0.88213 0.97395 1.20172 1.08218 1.36818 0.87390 0.90479 1.24958 0.96839 0.94752 0.95746 1.69886 1.38764 1.46166 0.98451 0.86857 0.84630 0.79854 0.78004 1.20471 1.22046 1.18013 1.22838 0.97231 1.07127 0.94382 1.22949 0.99393 0.97924 1.02768 0.91084 0.90906 0.91359 0.86169 0.86260 0.86061 0.86105 0.92613 0.93053 0.77934 0.76715 0.76676 0.91672 0.94335 0.92520 0.90911 0.89444 0.89163 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.40 36.01 0.34 -0.75 16 2 C -0.08 -0.87 5.88 -104.63 -0.62 -1.48 16 3 C -0.12 -1.20 9.70 -39.59 -0.38 -1.59 16 4 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 5 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 6 C -0.09 -1.08 8.98 -39.58 -0.36 -1.44 16 7 C -0.08 -0.95 4.65 -104.62 -0.49 -1.44 16 8 C 0.21 2.73 2.13 -69.08 -0.15 2.58 16 9 H 0.11 1.60 5.53 -51.93 -0.29 1.31 16 10 C 0.07 0.79 6.84 37.16 0.25 1.04 16 11 O -0.56 -6.03 12.87 -35.23 -0.45 -6.48 16 12 N -0.74 -11.06 4.95 -59.82 -0.30 -11.36 16 13 C 0.70 13.25 8.52 -86.92 -0.74 12.51 16 14 O -0.61 -13.33 15.96 5.29 0.08 -13.25 16 15 N -0.72 -13.77 5.46 -65.23 -0.36 -14.12 16 16 C 0.17 3.75 5.14 -4.05 -0.02 3.73 16 17 C -0.02 -0.34 0.81 -155.66 -0.13 -0.46 16 18 C -0.49 -12.96 9.29 -34.44 -0.32 -13.28 16 19 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 20 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 21 N -0.90 -26.79 13.96 55.43 0.77 -26.02 16 22 Si 0.88 21.68 24.88 -169.99 -4.23 17.45 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 25 H -0.26 -6.08 5.73 56.52 0.32 -5.76 16 26 C -0.18 -3.42 9.96 -26.69 -0.27 -3.69 16 27 C -0.19 -3.95 7.60 -26.69 -0.20 -4.16 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.70 6.03 -51.93 -0.31 0.39 16 30 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.12 1.37 6.07 -52.48 -0.32 1.05 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.05 0.48 7.94 -51.93 -0.41 0.07 16 37 H 0.37 2.46 9.12 45.56 0.42 2.87 16 38 H 0.40 5.30 6.23 -40.82 -0.25 5.04 16 39 H 0.40 7.09 8.46 -40.82 -0.35 6.75 16 40 H 0.07 1.57 6.61 -51.93 -0.34 1.23 16 41 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 45 H 0.09 1.94 7.28 -51.93 -0.38 1.57 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -33.07 373.17 -8.91 -41.99 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -6.09 Total: 15.73 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.96 Total: -9.56 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.12 Total: -51.50 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.37 Total: -19.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.23 Total: 17.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.07 -8.91 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569664878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.393 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds