Wall clock time and date at job start Tue Mar 31 2020 13:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38250 * 120.00052 * 2 1 4 4 C 1.38214 * 119.99990 * 180.25630 * 3 2 1 5 5 C 1.38261 * 119.99762 * 359.50930 * 4 3 2 6 6 C 1.38206 * 119.99881 * 0.44368 * 5 4 3 7 7 C 1.38210 * 119.99621 * 179.97438 * 2 1 3 8 8 C 1.50702 * 120.00274 * 359.97438 * 7 2 1 9 9 H 1.08995 * 109.47238 * 325.00338 * 8 7 2 10 10 C 1.53004 * 109.46595 * 85.00312 * 8 7 2 11 11 O 1.42899 * 109.47229 * 55.00527 * 10 8 7 12 12 N 1.46494 * 109.47224 * 205.00013 * 8 7 2 13 13 C 1.34780 * 120.00251 * 155.00068 * 12 8 7 14 14 O 1.21588 * 119.99569 * 354.93154 * 13 12 8 15 15 N 1.34773 * 120.00355 * 174.93224 * 13 12 8 16 16 C 1.46500 * 120.00283 * 185.08662 * 15 13 12 17 17 C 1.52989 * 109.47403 * 184.72491 * 16 15 13 18 18 C 1.50706 * 115.55135 * 64.84689 * 17 16 15 19 19 H 1.08002 * 120.00032 * 266.78142 * 18 17 16 20 20 C 1.37877 * 120.00032 * 86.77652 * 18 17 16 21 21 N 1.31512 * 119.99764 * 178.76571 * 20 18 17 22 22 Si 1.86794 * 119.99996 * 358.76812 * 20 18 17 23 23 H 1.48498 * 109.47150 * 91.33685 * 22 20 18 24 24 H 1.48503 * 109.47110 * 211.33573 * 22 20 18 25 25 H 1.48501 * 109.47262 * 331.33678 * 22 20 18 26 26 C 1.53000 * 117.50368 * 279.17582 * 17 16 15 27 27 C 1.53000 * 117.50059 * 210.51447 * 17 16 15 28 28 H 1.09005 * 109.47417 * 89.99740 * 1 2 3 29 29 H 1.09003 * 109.47513 * 209.99973 * 1 2 3 30 30 H 1.09000 * 109.47085 * 330.00178 * 1 2 3 31 31 H 1.08006 * 120.00050 * 359.97438 * 3 2 1 32 32 H 1.08002 * 120.00193 * 179.72495 * 4 3 2 33 33 H 1.07996 * 119.99874 * 180.28057 * 5 4 3 34 34 H 1.08005 * 119.99895 * 179.82476 * 6 5 4 35 35 H 1.09007 * 109.46760 * 174.99951 * 10 8 7 36 36 H 1.08997 * 109.47342 * 294.99744 * 10 8 7 37 37 H 0.96698 * 113.99959 * 180.02562 * 11 10 8 38 38 H 0.97005 * 120.00208 * 335.00786 * 12 8 7 39 39 H 0.97002 * 119.99827 * 5.08349 * 15 13 12 40 40 H 1.09002 * 109.47003 * 304.72794 * 16 15 13 41 41 H 1.09003 * 109.46999 * 64.72309 * 16 15 13 42 42 H 0.97001 * 120.00067 * 179.97438 * 21 20 18 43 43 H 1.09002 * 117.49204 * 359.97438 * 26 17 16 44 44 H 1.09002 * 117.50090 * 145.01872 * 26 17 16 45 45 H 1.09006 * 117.50231 * 214.98154 * 27 17 16 46 46 H 1.08999 * 117.49767 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0054 5 6 4.2717 -0.0001 -0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1980 -1.1970 0.0005 8 6 1.4444 -2.5021 0.0017 9 1 0.5340 -2.3954 0.5913 10 6 1.0801 -2.8818 -1.4350 11 8 2.2635 -2.9079 -2.2355 12 7 2.2845 -3.5505 0.5858 13 6 1.7151 -4.6323 1.1533 14 8 0.5059 -4.6955 1.2633 15 7 2.4861 -5.6440 1.5989 16 6 1.8646 -6.8668 2.1134 17 6 2.9482 -7.7989 2.6590 18 6 3.7041 -7.2856 3.8575 19 1 4.6308 -6.7479 3.7217 20 6 3.2125 -7.5024 5.1273 21 7 3.8844 -7.0757 6.1742 22 14 1.5923 -8.4023 5.3605 23 1 1.8511 -9.8567 5.5118 24 1 0.9130 -7.8911 6.5781 25 1 0.7246 -8.1744 4.1771 26 6 3.7191 -8.6529 1.6503 27 6 2.6909 -9.3049 2.5781 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1326 -0.0004 32 1 4.1204 2.1326 -0.0098 33 1 5.3516 -0.0001 -0.0001 34 1 4.1206 -2.1324 0.0015 35 1 0.6141 -3.8672 -1.4433 36 1 0.3839 -2.1472 -1.8396 37 1 2.1074 -3.1415 -3.1608 38 1 3.2506 -3.4661 0.5642 39 1 3.4524 -5.5625 1.5788 40 1 1.1684 -6.6120 2.9125 41 1 1.3264 -7.3673 1.3084 42 1 3.5384 -7.2279 7.0675 43 1 3.4539 -8.5508 0.5980 44 1 4.7728 -8.8437 1.8537 45 1 3.0686 -9.9246 3.3915 46 1 1.7494 -9.6316 2.1365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569664878.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:51 Heat of formation + Delta-G solvation = -49.944252 kcal Electronic energy + Delta-G solvation = -26878.365044 eV Core-core repulsion = 23153.853668 eV Total energy + Delta-G solvation = -3724.511376 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.47873 -40.30909 -38.84161 -37.82130 -35.67659 -35.00579 -34.21216 -33.85379 -31.96939 -29.54181 -28.21516 -27.75652 -26.88627 -24.44223 -23.38996 -23.03949 -21.58872 -21.35650 -21.00296 -19.46702 -18.47156 -18.35225 -17.64726 -16.95982 -16.89474 -16.43243 -16.18528 -15.95031 -15.67045 -15.57257 -15.05296 -14.87027 -14.79703 -14.71219 -14.30435 -14.08454 -13.93955 -13.74773 -13.54608 -13.08498 -13.04581 -13.00502 -12.66331 -12.58341 -12.18058 -11.97161 -11.89028 -11.72232 -11.60422 -11.37698 -10.97866 -10.92476 -10.65506 -10.37960 -10.31050 -9.72030 -9.64189 -9.45560 -8.29649 -6.35687 0.43069 0.51510 1.33688 1.39960 1.50405 1.75294 2.17763 2.37102 2.86151 3.05623 3.11958 3.33866 3.48556 3.61624 3.95155 4.03947 4.04904 4.16201 4.20272 4.37837 4.39746 4.43565 4.44103 4.50673 4.54555 4.66639 4.70667 4.80220 4.83615 4.87172 4.88420 4.95118 5.11038 5.14122 5.27961 5.32840 5.43164 5.50293 5.59853 5.63709 5.65114 5.70746 5.76921 6.05417 6.14480 6.28647 6.72444 6.88098 7.12760 7.34775 7.61153 8.85204 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016955 B = 0.003245 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.032378 B = 8626.458365 C = 8982.142847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.122 4.122 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.094 4.094 8 C 0.202 3.798 9 H 0.097 0.903 10 C 0.079 3.921 11 O -0.573 6.573 12 N -0.727 5.727 13 C 0.700 3.300 14 O -0.639 6.639 15 N -0.718 5.718 16 C 0.185 3.815 17 C -0.040 4.040 18 C -0.477 4.477 19 H 0.043 0.957 20 C 0.025 3.975 21 N -0.946 5.946 22 Si 0.929 3.071 23 H -0.265 1.265 24 H -0.304 1.304 25 H -0.240 1.240 26 C -0.151 4.151 27 C -0.190 4.190 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.118 0.882 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.393 0.607 38 H 0.404 0.596 39 H 0.405 0.595 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.264 0.736 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 14.117 -19.006 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.090 4.090 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.151 4.151 6 C -0.127 4.127 7 C -0.094 4.094 8 C 0.097 3.903 9 H 0.115 0.885 10 C -0.001 4.001 11 O -0.381 6.381 12 N -0.385 5.385 13 C 0.400 3.600 14 O -0.522 6.522 15 N -0.371 5.371 16 C 0.060 3.940 17 C -0.042 4.042 18 C -0.515 4.515 19 H 0.061 0.939 20 C -0.173 4.173 21 N -0.586 5.586 22 Si 0.755 3.245 23 H -0.190 1.190 24 H -0.231 1.231 25 H -0.164 1.164 26 C -0.188 4.188 27 C -0.228 4.228 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.242 0.758 38 H 0.242 0.758 39 H 0.240 0.760 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.122 0.878 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.717 14.191 -18.180 23.540 hybrid contribution 0.191 -0.647 0.446 0.809 sum -4.526 13.544 -17.734 22.769 Atomic orbital electron populations 1.20953 0.90104 1.03397 1.03351 1.19926 0.97034 0.92319 0.99707 1.21283 0.94606 0.97731 1.00676 1.21465 0.94562 0.98709 0.99215 1.21365 1.00877 0.92324 1.00552 1.20939 0.93585 0.98647 0.99559 1.19582 0.94176 0.93306 1.02370 1.19819 0.93709 0.83785 0.93004 0.88527 1.22426 0.87533 0.99904 0.90209 1.86463 1.32498 1.93390 1.25711 1.45098 1.10396 1.20440 1.62519 1.16102 0.85108 0.80537 0.78232 1.90825 1.14102 1.81818 1.65433 1.44892 1.09919 1.16026 1.66261 1.20750 0.93964 0.83552 0.95726 1.19442 0.97834 0.89472 0.97420 1.20357 1.06983 1.35101 0.89015 0.93902 1.25713 0.99892 0.95973 0.95701 1.70020 1.40809 1.48813 0.98929 0.86030 0.81198 0.79346 0.77908 1.18987 1.23148 1.16371 1.22867 0.96840 1.03727 0.95337 1.23022 1.01037 0.95793 1.02957 0.89557 0.92160 0.89955 0.83794 0.83808 0.84536 0.86418 0.94288 0.90792 0.75776 0.75812 0.76013 0.94831 0.92615 0.92743 0.87805 0.89661 0.90320 0.88173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.40 71.24 0.67 -1.30 16 2 C -0.09 -1.82 5.88 -19.87 -0.12 -1.94 16 3 C -0.13 -2.21 9.70 22.27 0.22 -1.99 16 4 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 5 C -0.13 -2.64 10.05 22.27 0.22 -2.41 16 6 C -0.11 -2.52 8.98 22.27 0.20 -2.32 16 7 C -0.09 -2.22 4.65 -19.86 -0.09 -2.31 16 8 C 0.20 5.29 2.13 44.25 0.09 5.38 16 9 H 0.10 2.82 5.53 -2.39 -0.01 2.81 16 10 C 0.08 1.71 6.84 71.98 0.49 2.20 16 11 O -0.57 -11.45 12.87 -148.98 -1.92 -13.37 16 12 N -0.73 -21.73 4.95 -461.42 -2.28 -24.01 16 13 C 0.70 26.47 8.52 179.05 1.53 27.99 16 14 O -0.64 -28.31 15.96 -3.99 -0.06 -28.38 16 15 N -0.72 -27.34 5.46 -478.55 -2.61 -29.95 16 16 C 0.18 7.74 5.14 86.38 0.44 8.19 16 17 C -0.04 -1.74 0.81 -52.93 -0.04 -1.78 16 18 C -0.48 -25.66 9.29 25.60 0.24 -25.42 16 19 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 20 C 0.03 1.43 5.47 84.66 0.46 1.89 16 21 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 22 Si 0.93 44.83 24.88 68.60 1.71 46.54 16 23 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 25 H -0.24 -10.91 5.73 99.48 0.57 -10.34 16 26 C -0.15 -5.35 9.96 30.62 0.30 -5.05 16 27 C -0.19 -7.30 7.60 30.62 0.23 -7.07 16 28 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.06 1.13 6.03 -2.39 -0.01 1.12 16 30 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 31 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.12 2.65 6.07 -2.91 -0.02 2.64 16 35 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.07 1.27 7.94 -2.39 -0.02 1.25 16 37 H 0.39 4.42 9.12 -74.06 -0.68 3.75 16 38 H 0.40 10.80 6.23 -92.70 -0.58 10.23 16 39 H 0.40 14.32 8.46 -92.71 -0.78 13.54 16 40 H 0.03 1.61 6.61 -2.39 -0.02 1.59 16 41 H 0.06 2.15 8.09 -2.39 -0.02 2.13 16 42 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 44 H 0.08 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.08 3.22 7.28 -2.38 -0.02 3.20 16 46 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 Total: -1.00 -72.61 373.17 -0.95 -73.55 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -1.15 Total: 41.59 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 5.08 Total: -7.84 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -4.60 Total: -112.09 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -1.98 Total: -41.75 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.71 Total: 46.54 kcal Total: -72.61 -0.95 -73.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569664878.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.610 kcal (2) G-P(sol) polarization free energy of solvation -72.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds