Wall clock time and date at job start Tue Mar 31 2020 12:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99664 * 2 1 4 4 H 1.48505 * 109.47029 * 239.99988 * 3 2 1 5 5 H 1.48503 * 109.47541 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47414 * 120.00540 * 3 2 1 7 7 C 1.37871 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.46039 * 184.99943 * 10 9 7 12 12 C 1.53195 * 109.31930 * 178.61406 * 11 10 9 13 13 N 1.46931 * 108.77276 * 54.63235 * 12 11 10 14 14 C 1.34776 * 120.62649 * 126.36970 * 13 12 11 15 15 O 1.21590 * 119.99345 * 185.22634 * 14 13 12 16 16 N 1.34771 * 120.00277 * 5.22978 * 14 13 12 17 17 C 1.46499 * 119.99996 * 175.01138 * 16 14 13 18 18 H 1.08998 * 115.56368 * 9.30248 * 17 16 14 19 19 C 1.52995 * 117.49858 * 223.60739 * 17 16 14 20 20 C 1.52995 * 60.03582 * 252.52259 * 19 17 16 21 21 H 1.09007 * 117.49905 * 107.47305 * 20 19 17 22 22 C 1.50699 * 117.50390 * 252.50003 * 20 19 17 23 23 C 1.34511 * 125.79114 * 188.32379 * 22 20 19 24 24 C 1.41388 * 106.84025 * 179.89011 * 23 22 20 25 25 C 1.34509 * 106.83986 * 0.37169 * 24 23 22 26 26 O 1.34301 * 125.78938 * 8.62992 * 22 20 19 27 27 C 1.46924 * 118.73698 * 306.64791 * 13 12 11 28 28 C 1.52763 * 109.01302 * 53.31109 * 27 13 12 29 29 H 0.97003 * 120.00614 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46611 * 59.99801 * 9 7 2 31 31 H 1.08998 * 109.46961 * 300.00009 * 9 7 2 32 32 H 1.09000 * 109.46172 * 304.97118 * 10 9 7 33 33 H 1.09000 * 109.50117 * 58.66374 * 11 10 9 34 34 H 1.09000 * 109.52556 * 298.58311 * 11 10 9 35 35 H 1.09003 * 109.58347 * 294.84837 * 12 11 10 36 36 H 1.08996 * 109.70990 * 174.49195 * 12 11 10 37 37 H 0.97001 * 120.00073 * 355.01843 * 16 14 13 38 38 H 1.08999 * 117.49750 * 145.02299 * 19 17 16 39 39 H 1.08993 * 117.50363 * 0.02645 * 19 17 16 40 40 H 1.08000 * 126.58000 * 0.02562 * 23 22 20 41 41 H 1.08001 * 126.57393 * 180.16184 * 24 23 22 42 42 H 1.07997 * 125.79080 * 179.75534 * 25 24 23 43 43 H 1.09006 * 109.58284 * 173.14485 * 27 13 12 44 44 H 1.09001 * 109.59024 * 293.56445 * 27 13 12 45 45 H 1.08993 * 109.56911 * 185.54902 * 28 27 13 46 46 H 1.09000 * 109.38574 * 65.50641 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6619 -0.0018 11 6 1.4841 -4.9836 -0.1276 12 6 2.4845 -6.1433 -0.1634 13 7 3.3515 -6.0565 1.0196 14 6 3.4933 -7.1118 1.8459 15 8 4.1367 -6.9987 2.8714 16 7 2.9219 -8.2922 1.5355 17 6 3.1656 -9.4674 2.3756 18 1 3.6860 -9.2751 3.3138 19 6 3.4503 -10.7942 1.6690 20 6 2.1073 -10.5734 2.3679 21 1 1.2302 -10.4261 1.7377 22 6 1.8643 -11.3134 3.6580 23 6 0.6977 -11.3687 4.3254 24 6 0.9189 -12.1668 5.4714 25 6 2.2095 -12.5445 5.4400 26 8 2.7771 -12.0248 4.3394 27 6 4.0561 -4.7955 1.2881 28 6 3.0424 -3.6527 1.3046 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5566 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 2.9284 -3.5548 -0.8445 33 1 0.8983 -4.9801 -1.0468 34 1 0.8187 -5.1035 0.7274 35 1 3.0908 -6.0750 -1.0666 36 1 1.9479 -7.0920 -0.1544 37 1 2.3493 -8.3638 0.7558 38 1 4.1580 -11.4747 2.1423 39 1 3.4567 -10.7927 0.5791 40 1 -0.2304 -10.8962 4.0395 41 1 0.1919 -12.4211 6.2285 42 1 2.7052 -13.1610 6.1753 43 1 4.5543 -4.8542 2.2558 44 1 4.7933 -4.6150 0.5057 45 1 3.5658 -2.7019 1.4048 46 1 2.3626 -3.7843 2.1464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580770876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:46 Heat of formation + Delta-G solvation = 6.835298 kcal Electronic energy + Delta-G solvation = -26000.589812 eV Core-core repulsion = 22278.540582 eV Total energy + Delta-G solvation = -3722.049230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.83410 -40.39473 -38.22198 -37.02628 -34.15546 -33.30726 -33.09573 -31.96123 -30.64381 -29.49888 -27.95790 -24.74418 -23.58937 -23.19089 -22.38140 -21.93912 -21.63746 -20.48306 -20.13049 -19.29753 -18.04800 -17.51573 -16.80081 -16.24991 -16.12207 -15.42276 -15.20135 -15.02962 -14.53422 -14.13940 -13.70946 -13.55977 -13.27832 -13.20202 -13.14486 -13.06029 -12.87779 -12.79574 -12.24322 -12.10960 -11.89955 -11.73107 -11.19908 -11.08721 -11.00215 -10.76841 -10.68029 -10.42802 -10.22470 -10.15910 -10.00144 -9.64108 -9.29023 -9.20323 -8.99121 -8.54117 -8.35460 -8.24390 -6.00249 -4.02154 1.39718 2.30332 2.51680 2.74861 3.11227 3.32918 3.37745 3.39876 3.65551 3.79102 4.21742 4.35097 4.45329 4.52945 4.69421 4.80695 4.97357 4.99003 5.25297 5.31199 5.33809 5.35609 5.50848 5.53601 5.58047 5.62961 5.68831 5.70351 5.80766 5.83390 5.96610 6.07920 6.22469 6.29786 6.35080 6.36395 6.48163 6.61426 6.87358 6.93626 7.00442 7.05108 7.12052 7.64989 7.79738 7.92844 7.99041 8.41690 8.60490 9.03985 9.61735 11.10972 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.002182 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.018665 B =12827.614692 C =13082.935130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.080 4.080 11 C -0.130 4.130 12 C 0.113 3.887 13 N -0.620 5.620 14 C 0.711 3.289 15 O -0.591 6.591 16 N -0.721 5.721 17 C 0.127 3.873 18 H 0.142 0.858 19 C -0.180 4.180 20 C -0.095 4.095 21 H 0.136 0.864 22 C 0.023 3.977 23 C -0.204 4.204 24 C -0.212 4.212 25 C -0.043 4.043 26 O -0.175 6.175 27 C 0.126 3.874 28 C -0.119 4.119 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.015 0.985 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.398 0.602 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.148 0.852 41 H 0.148 0.852 42 H 0.203 0.797 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.085 0.915 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.610 -25.574 3.674 26.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.009 4.009 10 C -0.099 4.099 11 C -0.168 4.168 12 C -0.010 4.010 13 N -0.356 5.356 14 C 0.413 3.587 15 O -0.469 6.469 16 N -0.376 5.376 17 C 0.019 3.981 18 H 0.160 0.840 19 C -0.219 4.219 20 C -0.115 4.115 21 H 0.154 0.846 22 C -0.027 4.027 23 C -0.224 4.224 24 C -0.231 4.231 25 C -0.111 4.111 26 O -0.071 6.071 27 C 0.004 3.996 28 C -0.158 4.158 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.166 0.834 41 H 0.166 0.834 42 H 0.219 0.781 43 H 0.105 0.895 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.257 -25.343 4.314 26.057 hybrid contribution -0.373 0.844 -0.281 0.965 sum 3.884 -24.499 4.033 25.131 Atomic orbital electron populations 1.69948 1.06050 1.26654 1.50897 1.25019 0.94817 0.99205 0.95446 0.86697 0.79603 0.83323 0.78603 1.20294 1.21395 1.20242 1.21200 0.92931 0.90945 1.50402 0.92610 1.19115 0.93582 0.91064 0.97116 1.21181 0.97974 0.94347 0.96361 1.22034 0.97484 0.95092 1.02237 1.21708 0.92597 0.98908 0.87829 1.47362 1.49312 1.12490 1.26473 1.15729 0.79849 0.80020 0.83074 1.90897 1.46923 1.83461 1.25664 1.44639 1.53744 1.07975 1.31283 1.21523 0.99464 0.80189 0.96922 0.84037 1.23612 0.97228 1.00370 1.00653 1.21041 0.95896 1.01593 0.92961 0.84626 1.21239 0.87838 0.98304 0.95349 1.21546 0.99093 1.04794 0.96920 1.21845 0.97089 1.03366 1.00831 1.24013 0.93884 1.02871 0.90321 1.83970 1.39113 1.52760 1.31272 1.21605 0.94507 0.81541 1.01949 1.21843 0.97811 0.97384 0.98725 0.93004 0.96661 0.96660 0.92304 0.91067 0.91980 0.91361 0.91648 0.76487 0.87237 0.87526 0.83408 0.83410 0.78059 0.89497 0.91977 0.89667 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -13.99 8.39 -34.44 -0.29 -14.28 16 8 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 9 C 0.03 0.69 4.45 -27.89 -0.12 0.57 16 10 C -0.08 -1.51 2.10 -90.58 -0.19 -1.70 16 11 C -0.13 -1.97 5.36 -26.61 -0.14 -2.12 16 12 C 0.11 1.36 6.39 -3.71 -0.02 1.34 16 13 N -0.62 -8.99 2.98 -178.76 -0.53 -9.52 16 14 C 0.71 10.83 8.30 -86.92 -0.72 10.10 16 15 O -0.59 -11.21 15.33 5.29 0.08 -11.13 16 16 N -0.72 -8.06 5.48 -58.64 -0.32 -8.38 16 17 C 0.13 1.32 6.15 -67.89 -0.42 0.90 16 18 H 0.14 1.82 7.39 -51.93 -0.38 1.44 16 19 C -0.18 -1.40 10.09 -26.74 -0.27 -1.67 16 20 C -0.10 -0.81 6.16 -91.73 -0.57 -1.37 16 21 H 0.14 0.91 8.14 -51.92 -0.42 0.48 16 22 C 0.02 0.23 6.80 -35.63 -0.24 -0.01 16 23 C -0.20 -1.98 10.81 -39.70 -0.43 -2.41 16 24 C -0.21 -1.83 10.91 -39.70 -0.43 -2.26 16 25 C -0.04 -0.35 12.09 29.41 0.36 0.00 16 26 O -0.17 -1.79 10.36 5.72 0.06 -1.73 16 27 C 0.13 1.98 6.41 -3.93 -0.03 1.96 16 28 C -0.12 -2.17 5.17 -26.83 -0.14 -2.31 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.59 5.64 -51.93 -0.29 0.30 16 37 H 0.40 3.39 6.32 -40.82 -0.26 3.13 16 38 H 0.11 0.86 7.96 -51.93 -0.41 0.44 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.20 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.09 1.44 6.99 -51.93 -0.36 1.08 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.65 6.91 -51.93 -0.36 1.29 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -33.34 375.50 -10.16 -43.51 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.07 Total: 2.81 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -3.75 Total: -11.77 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: -0.12 Total: -43.71 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.14 Total: -12.86 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.34 -10.16 -43.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580770876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.343 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds