Wall clock time and date at job start Tue Mar 31 2020 12:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99664 * 2 1 4 4 H 1.48505 * 109.47029 * 239.99988 * 3 2 1 5 5 H 1.48503 * 109.47541 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47414 * 120.00540 * 3 2 1 7 7 C 1.37871 * 120.00240 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00184 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00150 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.46039 * 184.99943 * 10 9 7 12 12 C 1.53195 * 109.31930 * 178.61406 * 11 10 9 13 13 N 1.46931 * 108.77276 * 54.63235 * 12 11 10 14 14 C 1.34776 * 120.62649 * 126.36970 * 13 12 11 15 15 O 1.21590 * 119.99345 * 185.22634 * 14 13 12 16 16 N 1.34771 * 120.00277 * 5.22978 * 14 13 12 17 17 C 1.46499 * 119.99996 * 175.01138 * 16 14 13 18 18 H 1.08998 * 115.56368 * 9.30248 * 17 16 14 19 19 C 1.52995 * 117.49858 * 223.60739 * 17 16 14 20 20 C 1.52995 * 60.03582 * 252.52259 * 19 17 16 21 21 H 1.09007 * 117.49905 * 107.47305 * 20 19 17 22 22 C 1.50699 * 117.50390 * 252.50003 * 20 19 17 23 23 C 1.34511 * 125.79114 * 188.32379 * 22 20 19 24 24 C 1.41388 * 106.84025 * 179.89011 * 23 22 20 25 25 C 1.34509 * 106.83986 * 0.37169 * 24 23 22 26 26 O 1.34301 * 125.78938 * 8.62992 * 22 20 19 27 27 C 1.46924 * 118.73698 * 306.64791 * 13 12 11 28 28 C 1.52763 * 109.01302 * 53.31109 * 27 13 12 29 29 H 0.97003 * 120.00614 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46611 * 59.99801 * 9 7 2 31 31 H 1.08998 * 109.46961 * 300.00009 * 9 7 2 32 32 H 1.09000 * 109.46172 * 304.97118 * 10 9 7 33 33 H 1.09000 * 109.50117 * 58.66374 * 11 10 9 34 34 H 1.09000 * 109.52556 * 298.58311 * 11 10 9 35 35 H 1.09003 * 109.58347 * 294.84837 * 12 11 10 36 36 H 1.08996 * 109.70990 * 174.49195 * 12 11 10 37 37 H 0.97001 * 120.00073 * 355.01843 * 16 14 13 38 38 H 1.08999 * 117.49750 * 145.02299 * 19 17 16 39 39 H 1.08993 * 117.50363 * 0.02645 * 19 17 16 40 40 H 1.08000 * 126.58000 * 0.02562 * 23 22 20 41 41 H 1.08001 * 126.57393 * 180.16184 * 24 23 22 42 42 H 1.07997 * 125.79080 * 179.75534 * 25 24 23 43 43 H 1.09006 * 109.58284 * 173.14485 * 27 13 12 44 44 H 1.09001 * 109.59024 * 293.56445 * 27 13 12 45 45 H 1.08993 * 109.56911 * 185.54902 * 28 27 13 46 46 H 1.09000 * 109.38574 * 65.50641 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6619 -0.0018 11 6 1.4841 -4.9836 -0.1276 12 6 2.4845 -6.1433 -0.1634 13 7 3.3515 -6.0565 1.0196 14 6 3.4933 -7.1118 1.8459 15 8 4.1367 -6.9987 2.8714 16 7 2.9219 -8.2922 1.5355 17 6 3.1656 -9.4674 2.3756 18 1 3.6860 -9.2751 3.3138 19 6 3.4503 -10.7942 1.6690 20 6 2.1073 -10.5734 2.3679 21 1 1.2302 -10.4261 1.7377 22 6 1.8643 -11.3134 3.6580 23 6 0.6977 -11.3687 4.3254 24 6 0.9189 -12.1668 5.4714 25 6 2.2095 -12.5445 5.4400 26 8 2.7771 -12.0248 4.3394 27 6 4.0561 -4.7955 1.2881 28 6 3.0424 -3.6527 1.3046 29 1 -0.4851 0.8400 0.0004 30 1 0.6241 -2.5566 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 2.9284 -3.5548 -0.8445 33 1 0.8983 -4.9801 -1.0468 34 1 0.8187 -5.1035 0.7274 35 1 3.0908 -6.0750 -1.0666 36 1 1.9479 -7.0920 -0.1544 37 1 2.3493 -8.3638 0.7558 38 1 4.1580 -11.4747 2.1423 39 1 3.4567 -10.7927 0.5791 40 1 -0.2304 -10.8962 4.0395 41 1 0.1919 -12.4211 6.2285 42 1 2.7052 -13.1610 6.1753 43 1 4.5543 -4.8542 2.2558 44 1 4.7933 -4.6150 0.5057 45 1 3.5658 -2.7019 1.4048 46 1 2.3626 -3.7843 2.1464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580770876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:46 Heat of formation + Delta-G solvation = -12.811494 kcal Electronic energy + Delta-G solvation = -26001.441761 eV Core-core repulsion = 22278.540582 eV Total energy + Delta-G solvation = -3722.901179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.50425 -41.52557 -39.25988 -38.16275 -35.74414 -34.50414 -33.92436 -33.55372 -31.86259 -30.27046 -29.63094 -26.40060 -24.50636 -24.12083 -23.77048 -22.81935 -22.61832 -21.49649 -21.12076 -20.52881 -19.17250 -18.38422 -18.24920 -17.67884 -16.89517 -16.60340 -16.48995 -16.12125 -15.87121 -15.32820 -15.08641 -14.74351 -14.61990 -14.32718 -14.13268 -14.06740 -13.83727 -13.74243 -13.46378 -13.31470 -13.01519 -12.81395 -12.73635 -12.59176 -12.45745 -12.33003 -12.10074 -11.80941 -11.73132 -11.37534 -11.29043 -11.02072 -10.84579 -10.80674 -10.50543 -10.13771 -9.53328 -9.13283 -8.16007 -6.24849 0.70791 1.41184 1.43350 1.49277 1.50681 1.69677 2.00593 2.09393 2.42961 2.79767 2.95389 3.17597 3.53508 3.64803 3.86366 3.94935 4.00122 4.08619 4.11525 4.18008 4.23120 4.36504 4.44467 4.52093 4.62047 4.70922 4.80901 4.83959 4.89253 4.91352 5.00178 5.01386 5.06892 5.10706 5.21948 5.31522 5.34879 5.40179 5.46557 5.55673 5.59891 5.61207 5.82695 5.91192 5.95940 6.20295 6.31056 6.90622 6.92033 7.43551 7.49110 8.95467 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.002182 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.018665 B =12827.614692 C =13082.935130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.033 3.967 10 C -0.073 4.073 11 C -0.125 4.125 12 C 0.118 3.882 13 N -0.622 5.622 14 C 0.706 3.294 15 O -0.636 6.636 16 N -0.702 5.702 17 C 0.100 3.900 18 H 0.110 0.890 19 C -0.156 4.156 20 C -0.083 4.083 21 H 0.159 0.841 22 C 0.000 4.000 23 C -0.219 4.219 24 C -0.229 4.229 25 C -0.044 4.044 26 O -0.191 6.191 27 C 0.136 3.864 28 C -0.111 4.111 29 H 0.261 0.739 30 H -0.007 1.007 31 H -0.018 1.018 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.413 0.587 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.236 0.764 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -27.427 2.453 27.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.082 0.918 9 C -0.004 4.004 10 C -0.091 4.091 11 C -0.163 4.163 12 C -0.004 4.004 13 N -0.358 5.358 14 C 0.408 3.592 15 O -0.518 6.518 16 N -0.358 5.358 17 C -0.007 4.007 18 H 0.128 0.872 19 C -0.194 4.194 20 C -0.102 4.102 21 H 0.176 0.824 22 C -0.050 4.050 23 C -0.238 4.238 24 C -0.248 4.248 25 C -0.111 4.111 26 O -0.087 6.087 27 C 0.013 3.987 28 C -0.150 4.150 29 H 0.069 0.931 30 H 0.011 0.989 31 H 0.000 1.000 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.254 0.746 38 H 0.126 0.874 39 H 0.150 0.850 40 H 0.174 0.826 41 H 0.184 0.816 42 H 0.252 0.748 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.082 -27.239 3.059 27.877 hybrid contribution -0.695 1.373 0.178 1.549 sum 4.387 -25.866 3.238 26.435 Atomic orbital electron populations 1.70088 1.07739 1.27519 1.52304 1.25935 0.95674 1.03167 0.95262 0.85611 0.78310 0.78670 0.79127 1.18994 1.21330 1.19525 1.21663 0.93541 0.92097 1.49350 0.91845 1.19014 0.94038 0.93024 0.94326 1.21032 0.97009 0.94249 0.96853 1.21942 0.97838 0.94271 1.02277 1.21845 0.91949 0.99079 0.87551 1.47367 1.49494 1.11831 1.27088 1.15916 0.79782 0.80981 0.82501 1.90868 1.48991 1.84309 1.27609 1.44399 1.53001 1.06850 1.31579 1.21422 1.01825 0.80825 0.96611 0.87247 1.23671 0.96530 0.97419 1.01823 1.21159 0.96807 0.99511 0.92715 0.82405 1.21587 0.88075 0.99107 0.96264 1.21870 0.99508 1.05004 0.97422 1.22186 0.97924 1.03531 1.01150 1.24764 0.94056 1.02287 0.89979 1.83965 1.39675 1.53099 1.32004 1.21385 0.93908 0.81233 1.02171 1.21695 0.97792 0.97933 0.97532 0.93054 0.98873 1.00011 0.91534 0.89822 0.93401 0.89085 0.87879 0.74636 0.87379 0.85046 0.82578 0.81638 0.74768 0.90726 0.89963 0.91351 0.94568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.82 13.29 21.44 0.28 -56.53 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.53 -29.08 8.39 25.60 0.21 -28.86 16 8 H 0.06 3.32 7.06 -2.91 -0.02 3.30 16 9 C 0.03 1.67 4.45 29.85 0.13 1.81 16 10 C -0.07 -2.74 2.10 -10.77 -0.02 -2.76 16 11 C -0.12 -3.61 5.36 30.67 0.16 -3.45 16 12 C 0.12 2.46 6.39 86.36 0.55 3.01 16 13 N -0.62 -16.99 2.98 -837.72 -2.50 -19.49 16 14 C 0.71 20.79 8.30 179.06 1.49 22.27 16 15 O -0.64 -24.47 15.33 -4.00 -0.06 -24.54 16 16 N -0.70 -14.25 5.48 -457.70 -2.51 -16.76 16 17 C 0.10 1.98 6.15 45.02 0.28 2.26 16 18 H 0.11 2.92 7.39 -2.39 -0.02 2.90 16 19 C -0.16 -2.05 10.09 30.59 0.31 -1.74 16 20 C -0.08 -1.24 6.16 -11.52 -0.07 -1.31 16 21 H 0.16 1.61 8.14 -2.38 -0.02 1.59 16 22 C 0.00 -0.01 6.80 24.83 0.17 0.16 16 23 C -0.22 -4.06 10.81 22.19 0.24 -3.82 16 24 C -0.23 -3.69 10.91 22.19 0.24 -3.44 16 25 C -0.04 -0.66 12.09 66.97 0.81 0.15 16 26 O -0.19 -3.74 10.36 -2.46 -0.03 -3.77 16 27 C 0.14 4.18 6.41 86.22 0.55 4.73 16 28 C -0.11 -4.09 5.17 30.53 0.16 -3.93 16 29 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.10 1.40 5.64 -2.39 -0.01 1.39 16 37 H 0.41 5.54 6.32 -92.71 -0.59 4.95 16 38 H 0.11 1.49 7.96 -2.39 -0.02 1.47 16 39 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.24 1.49 8.06 -2.91 -0.02 1.47 16 43 H 0.07 2.50 6.99 -2.38 -0.02 2.49 16 44 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.07 2.71 6.91 -2.39 -0.02 2.69 16 46 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -75.82 375.50 3.29 -72.53 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.40 Total: 17.04 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.67 Total: -14.64 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -4.72 Total: -92.78 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.09 Total: -28.31 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -75.82 3.29 -72.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580770876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.718 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds