Wall clock time and date at job start Tue Mar 31 2020 12:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47355 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46986 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46614 * 180.02562 * 12 11 10 14 14 O 1.21274 * 120.00307 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99808 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00431 * 179.97438 * 15 13 12 17 17 H 1.09004 * 109.24666 * 35.00106 * 16 15 13 18 18 C 1.52759 * 109.25884 * 154.47252 * 16 15 13 19 19 C 1.53315 * 108.35801 * 171.18600 * 18 16 15 20 20 C 1.52709 * 108.39955 * 290.14941 * 19 18 16 21 21 C 1.50743 * 110.58779 * 51.30509 * 20 19 18 22 22 N 1.32785 * 117.49004 * 162.37330 * 21 20 19 23 23 C 1.31898 * 122.34810 * 179.30592 * 22 21 20 24 24 O 1.35681 * 119.76803 * 180.02562 * 23 22 21 25 25 C 1.38936 * 120.46323 * 0.08107 * 23 22 21 26 26 C 1.38139 * 118.78713 * 0.11103 * 25 23 22 27 27 C 1.37489 * 122.34771 * 342.00206 * 21 20 19 28 28 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 29 29 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 30 30 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 31 31 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 32 32 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 33 33 H 1.09000 * 109.46966 * 300.00313 * 11 10 9 34 34 H 1.09002 * 109.46807 * 60.00291 * 11 10 9 35 35 H 1.08998 * 109.47018 * 300.00053 * 12 11 10 36 36 H 1.09002 * 109.47113 * 60.00475 * 12 11 10 37 37 H 0.97005 * 119.99841 * 359.97438 * 15 13 12 38 38 H 1.08999 * 109.68931 * 290.86632 * 18 16 15 39 39 H 1.08996 * 109.68419 * 51.43808 * 18 16 15 40 40 H 1.09001 * 109.68167 * 170.42811 * 19 18 16 41 41 H 1.09005 * 109.72444 * 49.89636 * 19 18 16 42 42 H 1.09000 * 109.25711 * 291.02329 * 20 19 18 43 43 H 1.08995 * 109.22401 * 171.56939 * 20 19 18 44 44 H 0.96701 * 113.99592 * 270.02380 * 24 23 22 45 45 H 1.08000 * 120.60297 * 180.13242 * 25 23 22 46 46 H 1.08002 * 120.51460 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4803 -4.9871 0.0231 12 6 2.4745 -6.1500 0.0288 13 6 1.7209 -7.4551 0.0345 14 8 0.5082 -7.4550 0.0336 15 7 2.3948 -8.6222 0.0407 16 6 1.6624 -9.8909 0.0468 17 1 0.7529 -9.7837 -0.5443 18 6 2.5377 -10.9810 -0.5688 19 6 1.8481 -12.3333 -0.3531 20 6 1.9088 -12.6734 1.1344 21 6 1.3989 -11.5218 1.9628 22 7 1.0517 -11.7767 3.2188 23 6 0.6065 -10.8387 4.0322 24 8 0.2669 -11.1576 5.3065 25 6 0.4819 -9.5265 3.5929 26 6 0.8301 -9.2251 2.2906 27 6 1.2950 -10.2453 1.4628 28 1 -0.4850 0.8401 -0.0041 29 1 0.6241 -2.5528 0.9015 30 1 0.6247 -2.5609 -0.8785 31 1 2.8719 -3.6083 -0.8736 32 1 2.8719 -3.6004 0.9064 33 1 0.8539 -5.0406 0.9135 34 1 0.8533 -5.0490 -0.8665 35 1 3.1012 -6.0966 -0.8614 36 1 3.1011 -6.0879 0.9186 37 1 3.3648 -8.6222 0.0411 38 1 2.6574 -10.7967 -1.6364 39 1 3.5142 -10.9849 -0.0845 40 1 2.3631 -13.1037 -0.9270 41 1 0.8080 -12.2710 -0.6731 42 1 2.9409 -12.8869 1.4126 43 1 1.2954 -13.5537 1.3266 44 1 -0.6588 -11.4159 5.4139 45 1 0.1196 -8.7562 4.2576 46 1 0.7438 -8.2144 1.9198 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588148682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:36 Heat of formation + Delta-G solvation = -99.314484 kcal Electronic energy + Delta-G solvation = -25945.043455 eV Core-core repulsion = 22218.391225 eV Total energy + Delta-G solvation = -3726.652230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -42.16451 -40.73328 -38.95397 -37.04328 -36.59022 -35.35319 -34.61930 -33.46904 -31.59281 -30.79449 -29.89625 -27.40628 -25.24750 -24.39006 -24.31539 -23.09684 -21.77467 -21.44321 -20.96675 -19.51257 -18.43297 -18.16553 -17.83127 -17.53307 -17.12548 -16.71547 -16.56295 -16.46381 -15.65363 -15.14902 -15.03302 -14.65933 -14.57181 -14.52887 -14.25200 -14.08680 -13.75891 -13.57632 -13.41718 -13.24513 -12.86681 -12.83687 -12.73743 -12.35452 -12.17584 -12.14427 -12.11198 -11.80547 -11.71717 -11.37248 -11.35498 -11.16514 -10.91914 -10.75651 -10.59780 -10.55153 -10.11198 -9.72190 -8.19118 -6.31094 -0.13488 0.10417 1.40053 1.42215 1.53235 1.60319 2.12388 2.41160 2.43161 2.68228 3.13702 3.45408 3.57214 3.66672 3.76119 3.90126 4.04776 4.06885 4.12266 4.16372 4.21111 4.39770 4.42635 4.49188 4.67657 4.69271 4.71624 4.85791 4.86664 4.87400 4.91876 5.02170 5.12844 5.16282 5.20306 5.25543 5.32334 5.33885 5.39183 5.49560 5.51867 5.57948 5.78631 5.88345 6.25395 6.53813 6.54721 6.83620 6.87616 7.24673 7.38559 8.93091 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019714 B = 0.002248 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.934103 B =12451.968720 C =13469.513176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.066 0.934 9 C 0.019 3.981 10 C -0.096 4.096 11 C -0.095 4.095 12 C -0.131 4.131 13 C 0.513 3.487 14 O -0.577 6.577 15 N -0.712 5.712 16 C 0.192 3.808 17 H 0.083 0.917 18 C -0.119 4.119 19 C -0.110 4.110 20 C -0.068 4.068 21 C 0.160 3.840 22 N -0.531 5.531 23 C 0.310 3.690 24 O -0.492 6.492 25 C -0.202 4.202 26 C -0.061 4.061 27 C -0.157 4.157 28 H 0.263 0.737 29 H -0.016 1.016 30 H -0.015 1.015 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.420 0.580 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.066 0.934 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.420 0.580 45 H 0.147 0.853 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.851 -29.999 0.856 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.793 3.207 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.134 4.134 11 C -0.134 4.134 12 C -0.170 4.170 13 C 0.302 3.698 14 O -0.457 6.457 15 N -0.365 5.365 16 C 0.086 3.914 17 H 0.101 0.899 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.106 4.106 21 C 0.024 3.976 22 N -0.251 5.251 23 C 0.129 3.871 24 O -0.302 6.302 25 C -0.223 4.223 26 C -0.087 4.087 27 C -0.161 4.161 28 H 0.071 0.929 29 H 0.002 0.998 30 H 0.003 0.997 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.257 0.743 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.280 0.720 45 H 0.165 0.835 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.481 -30.594 1.353 31.524 hybrid contribution -0.733 2.115 0.201 2.247 sum 6.748 -28.479 1.553 29.308 Atomic orbital electron populations 1.70131 1.08051 1.27737 1.51931 1.26089 0.95778 1.03715 0.94821 0.85398 0.78663 0.78119 0.78563 1.19635 1.20990 1.18368 1.21761 0.93729 0.92270 1.50163 0.91629 1.19053 0.94690 0.93785 0.94296 1.21449 0.97811 0.92867 1.01244 1.21241 0.97471 0.93533 1.01116 1.21699 0.99012 0.89568 1.06722 1.21177 0.87944 0.86679 0.74043 1.90708 1.16091 1.88202 1.50697 1.46055 1.11186 1.04253 1.75002 1.19697 0.96938 0.84275 0.90484 0.89948 1.21869 0.98812 0.92595 1.02430 1.21553 1.01972 0.97182 0.94130 1.20556 1.02606 0.93826 0.93593 1.21323 0.93357 0.94043 0.88893 1.67070 1.14602 1.38269 1.05176 1.19157 0.94789 0.88415 0.84723 1.84721 1.35527 1.89233 1.20690 1.22254 1.05002 0.97829 0.97263 1.22003 0.92916 1.00889 0.92911 1.21020 1.02917 0.93641 0.98481 0.92862 0.99770 0.99665 0.92025 0.92292 0.93891 0.93622 0.86075 0.86692 0.74260 0.88515 0.89198 0.87212 0.91529 0.88193 0.89113 0.71957 0.83543 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.00 13.29 21.45 0.28 -58.71 16 2 C -0.01 -0.41 5.46 84.66 0.46 0.06 16 3 Si 0.97 44.73 29.54 68.60 2.03 46.76 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 7 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.03 4.97 29.85 0.15 1.18 16 10 C -0.10 -3.85 5.15 30.59 0.16 -3.69 16 11 C -0.10 -3.30 4.50 30.60 0.14 -3.16 16 12 C -0.13 -2.96 5.70 29.85 0.17 -2.79 16 13 C 0.51 12.32 6.34 87.66 0.56 12.88 16 14 O -0.58 -19.26 13.80 -3.01 -0.04 -19.30 16 15 N -0.71 -11.33 4.84 -446.77 -2.16 -13.49 16 16 C 0.19 3.10 2.59 44.11 0.11 3.21 16 17 H 0.08 1.70 7.56 -2.39 -0.02 1.68 16 18 C -0.12 -0.94 5.44 30.62 0.17 -0.77 16 19 C -0.11 -0.77 5.97 30.60 0.18 -0.59 16 20 C -0.07 -0.77 5.91 29.76 0.18 -0.59 16 21 C 0.16 3.10 6.62 42.25 0.28 3.38 16 22 N -0.53 -12.50 10.21 -297.24 -3.03 -15.53 16 23 C 0.31 7.27 7.75 84.85 0.66 7.93 16 24 O -0.49 -9.73 13.56 -89.99 -1.22 -10.95 16 25 C -0.20 -4.81 10.06 22.41 0.23 -4.58 16 26 C -0.06 -1.53 9.08 22.52 0.20 -1.32 16 27 C -0.16 -3.23 5.55 -19.83 -0.11 -3.34 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 30 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 31 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.04 1.63 8.10 -2.39 -0.02 1.61 16 34 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 35 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.42 3.82 8.60 -92.70 -0.80 3.02 16 38 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.09 0.49 8.10 -2.39 -0.02 0.47 16 40 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 41 H 0.07 0.58 8.10 -2.38 -0.02 0.56 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 43 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.42 3.99 9.06 -74.06 -0.67 3.32 16 45 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 46 H 0.13 3.78 4.55 -2.91 -0.01 3.77 16 Total: -1.00 -80.97 374.46 -0.85 -81.82 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -0.47 Total: 12.68 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 3.76 Total: -23.28 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -4.91 Total: -87.74 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.26 Total: -30.25 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -80.97 -0.85 -81.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588148682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.493 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds