Wall clock time and date at job start Tue Mar 31 2020 12:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99844 * 2 1 4 4 H 1.48504 * 109.47166 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46968 * 240.00020 * 3 2 1 6 6 H 1.48500 * 109.47140 * 119.99939 * 3 2 1 7 7 C 1.37873 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46770 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46980 * 180.02562 * 12 11 10 14 14 O 1.21276 * 119.99927 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99571 * 180.02562 * 13 12 11 16 16 C 1.47428 * 125.65088 * 359.69424 * 15 13 12 17 17 C 1.55130 * 104.72053 * 155.81833 * 16 15 13 18 18 C 1.55154 * 101.48788 * 37.29616 * 17 16 15 19 19 H 1.09001 * 110.72107 * 82.69456 * 18 17 16 20 20 O 1.42899 * 110.87352 * 205.90077 * 18 17 16 21 21 C 1.35739 * 116.99825 * 269.65368 * 20 18 17 22 22 C 1.39272 * 120.84719 * 185.15498 * 21 20 18 23 23 C 1.37972 * 119.08786 * 179.77288 * 22 21 20 24 24 N 1.31959 * 120.82363 * 0.51392 * 23 22 21 25 25 C 1.31954 * 121.86816 * 359.73907 * 24 23 22 26 26 C 1.37975 * 120.82162 * 359.97438 * 25 24 23 27 27 C 1.47026 * 125.64753 * 180.02562 * 15 13 12 28 28 H 0.96998 * 119.99867 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47455 * 300.00564 * 9 7 2 30 30 H 1.09003 * 109.46412 * 59.99935 * 9 7 2 31 31 H 1.09001 * 109.47699 * 300.00149 * 10 9 7 32 32 H 1.09003 * 109.47353 * 60.00750 * 10 9 7 33 33 H 1.08997 * 109.47812 * 300.00218 * 11 10 9 34 34 H 1.09006 * 109.47070 * 60.00819 * 11 10 9 35 35 H 1.09000 * 109.47637 * 300.00893 * 12 11 10 36 36 H 1.09006 * 109.46386 * 60.00571 * 12 11 10 37 37 H 1.09000 * 110.36500 * 274.74848 * 16 15 13 38 38 H 1.09000 * 110.36624 * 37.06977 * 16 15 13 39 39 H 1.09005 * 111.19198 * 279.19293 * 17 16 15 40 40 H 1.08997 * 110.93754 * 155.29001 * 17 16 15 41 41 H 1.08000 * 120.44935 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.58328 * 180.27138 * 23 22 21 43 43 H 1.07998 * 119.59045 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.45570 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.88286 * 300.44579 * 27 15 13 46 46 H 1.09003 * 109.87594 * 61.44876 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 6 2.4747 -6.1500 -0.0031 13 6 1.7212 -7.4551 -0.0031 14 8 0.5084 -7.4551 -0.0022 15 7 2.3951 -8.6222 -0.0042 16 6 3.8622 -8.7673 -0.0118 17 6 4.1232 -10.1668 0.6046 18 6 2.9424 -10.9866 0.0206 19 1 3.1736 -11.3317 -0.9872 20 8 2.6198 -12.0901 0.8693 21 6 3.2578 -13.2630 0.6244 22 6 2.9279 -14.4166 1.3315 23 6 3.5964 -15.5902 1.0497 24 7 4.5435 -15.6252 0.1316 25 6 4.8878 -14.5525 -0.5555 26 6 4.2626 -13.3422 -0.3367 27 6 1.7890 -9.9617 -0.0048 28 1 -0.4850 -0.8400 0.0004 29 1 0.6247 -2.5572 0.8896 30 1 0.6241 -2.5566 -0.8903 31 1 2.8714 -3.6039 -0.8922 32 1 2.8727 -3.6047 0.8878 33 1 0.8547 -5.0450 0.8894 34 1 0.8528 -5.0447 -0.8906 35 1 3.1001 -6.0919 -0.8939 36 1 3.1026 -6.0925 0.8861 37 1 4.2425 -8.7227 -1.0323 38 1 4.3233 -7.9919 0.6000 39 1 4.0749 -10.1333 1.6930 40 1 5.0801 -10.5674 0.2701 41 1 2.1571 -14.3934 2.0876 42 1 3.3439 -16.4906 1.5902 43 1 5.6680 -14.6231 -1.2988 44 1 4.5488 -12.4681 -0.9027 45 1 1.1633 -10.0859 0.8790 46 1 1.1895 -10.0968 -0.9051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588165715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:11 Heat of formation + Delta-G solvation = -54.584786 kcal Electronic energy + Delta-G solvation = -25120.621333 eV Core-core repulsion = 21395.908728 eV Total energy + Delta-G solvation = -3724.712605 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.35212 -40.24665 -38.95678 -37.09593 -35.12013 -32.91797 -32.31512 -31.76424 -31.22581 -29.96545 -28.90056 -25.65786 -24.42923 -23.81732 -23.51653 -22.29393 -21.49601 -20.30931 -19.48897 -19.26698 -17.50990 -16.95447 -16.69449 -16.54857 -16.23702 -15.87392 -15.67075 -15.37420 -14.85539 -14.62613 -14.22724 -14.13159 -13.99361 -13.70111 -13.45758 -13.22780 -12.92379 -12.85716 -12.54259 -12.31038 -12.24359 -12.03144 -11.57749 -11.39195 -11.12192 -10.96720 -10.69553 -10.59696 -10.10384 -10.06984 -9.99879 -9.78464 -9.76959 -9.58233 -9.41199 -9.01638 -8.47623 -8.28059 -6.31357 -4.00191 0.55667 0.79831 2.12387 2.53862 2.83724 3.28654 3.45229 3.47675 3.66530 3.71899 3.82799 3.93233 4.12005 4.19221 4.33771 4.46437 4.57368 4.62146 4.64760 4.68342 4.83394 5.01572 5.10577 5.13096 5.16757 5.21471 5.23159 5.32751 5.33878 5.42327 5.45997 5.52029 5.68957 5.87172 5.99656 6.00172 6.16038 6.39648 6.63237 6.67974 6.84209 7.01894 7.17811 7.48382 7.48498 7.61220 8.02851 8.27304 8.51366 8.93625 9.72645 11.09342 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.047396 B = 0.001649 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.621810 B =16979.760428 C =17350.881428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.006 3.994 10 C -0.103 4.103 11 C -0.105 4.105 12 C -0.132 4.132 13 C 0.531 3.469 14 O -0.529 6.529 15 N -0.626 5.626 16 C 0.101 3.899 17 C -0.156 4.156 18 C 0.071 3.929 19 H 0.096 0.904 20 O -0.294 6.294 21 C 0.173 3.827 22 C -0.206 4.206 23 C 0.134 3.866 24 N -0.511 5.511 25 C 0.137 3.863 26 C -0.263 4.263 27 C 0.113 3.887 28 H 0.269 0.731 29 H 0.007 0.993 30 H 0.007 0.993 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.143 0.857 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.141 0.859 45 H 0.083 0.917 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.037 -31.892 0.078 34.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.191 4.191 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.031 4.031 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.172 4.172 13 C 0.321 3.679 14 O -0.404 6.404 15 N -0.364 5.364 16 C -0.022 4.022 17 C -0.194 4.194 18 C 0.014 3.986 19 H 0.114 0.886 20 O -0.205 6.205 21 C 0.120 3.880 22 C -0.227 4.227 23 C -0.022 4.022 24 N -0.224 5.224 25 C -0.020 4.020 26 C -0.284 4.284 27 C -0.010 4.010 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.161 0.839 42 H 0.180 0.820 43 H 0.176 0.824 44 H 0.158 0.842 45 H 0.102 0.898 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.373 -30.841 0.073 32.871 hybrid contribution 0.012 -0.903 0.022 0.904 sum 11.385 -31.744 0.095 33.724 Atomic orbital electron populations 1.70768 1.06889 1.30666 1.46688 1.25863 0.96597 1.02739 0.93907 0.83547 0.74872 0.75414 0.76413 1.20781 1.21503 1.21510 1.22082 0.94212 0.92186 1.55652 0.93417 1.19227 0.94707 0.93091 0.96050 1.21515 0.98809 0.93383 1.00333 1.21496 0.97097 0.92763 1.02985 1.21772 1.00018 0.91315 1.04057 1.20863 0.87928 0.84144 0.74969 1.90730 1.14022 1.86866 1.48737 1.48499 1.07158 1.05076 1.75653 1.22360 0.81069 0.97261 1.01531 1.23409 0.98356 0.94810 1.02789 1.23513 0.95830 0.85127 0.94139 0.88640 1.86114 1.62405 1.17101 1.54861 1.19342 0.90098 0.85943 0.92659 1.21578 1.05297 0.91409 1.04370 1.22677 0.89939 0.96779 0.92764 1.67743 1.15584 1.31139 1.07897 1.22615 0.96493 0.87163 0.95721 1.22292 1.01244 1.01580 1.03262 1.21653 0.94310 0.81082 1.03935 0.92045 0.97473 0.97477 0.93256 0.93274 0.91762 0.91769 0.88995 0.89007 0.90542 0.89271 0.88921 0.88994 0.83892 0.81961 0.82410 0.84152 0.89835 0.90116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.82 13.65 55.43 0.76 -28.06 16 2 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 3 Si 1.07 25.67 29.90 -169.99 -5.08 20.59 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.60 -17.62 9.11 -34.44 -0.31 -17.93 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 10 C -0.10 -2.12 5.15 -26.73 -0.14 -2.25 16 11 C -0.11 -1.87 4.50 -26.73 -0.12 -1.99 16 12 C -0.13 -1.72 4.70 -27.88 -0.13 -1.85 16 13 C 0.53 7.40 7.85 -10.98 -0.09 7.32 16 14 O -0.53 -9.67 16.31 5.56 0.09 -9.58 16 15 N -0.63 -6.37 3.32 -170.37 -0.57 -6.94 16 16 C 0.10 0.63 6.70 -2.41 -0.02 0.61 16 17 C -0.16 -0.81 6.68 -24.46 -0.16 -0.97 16 18 C 0.07 0.45 2.74 -24.90 -0.07 0.38 16 19 H 0.10 0.46 6.30 -51.93 -0.33 0.13 16 20 O -0.29 -2.33 9.89 -18.93 -0.19 -2.52 16 21 C 0.17 1.27 6.72 -38.81 -0.26 1.01 16 22 C -0.21 -1.37 10.08 -39.29 -0.40 -1.77 16 23 C 0.13 0.87 11.17 -17.59 -0.20 0.67 16 24 N -0.51 -4.08 10.36 -13.33 -0.14 -4.21 16 25 C 0.14 0.86 11.17 -17.60 -0.20 0.67 16 26 C -0.26 -1.56 8.99 -39.30 -0.35 -1.91 16 27 C 0.11 1.03 6.64 -3.06 -0.02 1.01 16 28 H 0.27 8.50 7.22 -40.82 -0.29 8.21 16 29 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 30 H 0.01 0.19 8.01 -51.93 -0.42 -0.22 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 34 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.03 7.85 -51.93 -0.41 0.62 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.50 7.48 -51.93 -0.39 0.11 16 39 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.30 7.82 -51.93 -0.41 -0.11 16 41 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 42 H 0.16 0.60 8.06 -52.48 -0.42 0.17 16 43 H 0.16 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.14 0.53 5.80 -52.49 -0.30 0.23 16 45 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 380.24 15.07 5.73 5.73 Total: -1.00 -36.58 380.24 -9.30 -45.88 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -7.23 Total: -4.21 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.68 Total: -16.69 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.05 Total: -39.21 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.10 Total: -12.10 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.58 -9.30 -45.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.701 kcal (2) G-P(sol) polarization free energy of solvation -36.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds