Wall clock time and date at job start Tue Mar 31 2020 12:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99844 * 2 1 4 4 H 1.48504 * 109.47166 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.46968 * 240.00020 * 3 2 1 6 6 H 1.48500 * 109.47140 * 119.99939 * 3 2 1 7 7 C 1.37873 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.52992 * 109.47088 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46770 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.46980 * 180.02562 * 12 11 10 14 14 O 1.21276 * 119.99927 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99571 * 180.02562 * 13 12 11 16 16 C 1.47428 * 125.65088 * 359.69424 * 15 13 12 17 17 C 1.55130 * 104.72053 * 155.81833 * 16 15 13 18 18 C 1.55154 * 101.48788 * 37.29616 * 17 16 15 19 19 H 1.09001 * 110.72107 * 82.69456 * 18 17 16 20 20 O 1.42899 * 110.87352 * 205.90077 * 18 17 16 21 21 C 1.35739 * 116.99825 * 269.65368 * 20 18 17 22 22 C 1.39272 * 120.84719 * 185.15498 * 21 20 18 23 23 C 1.37972 * 119.08786 * 179.77288 * 22 21 20 24 24 N 1.31959 * 120.82363 * 0.51392 * 23 22 21 25 25 C 1.31954 * 121.86816 * 359.73907 * 24 23 22 26 26 C 1.37975 * 120.82162 * 359.97438 * 25 24 23 27 27 C 1.47026 * 125.64753 * 180.02562 * 15 13 12 28 28 H 0.96998 * 119.99867 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47455 * 300.00564 * 9 7 2 30 30 H 1.09003 * 109.46412 * 59.99935 * 9 7 2 31 31 H 1.09001 * 109.47699 * 300.00149 * 10 9 7 32 32 H 1.09003 * 109.47353 * 60.00750 * 10 9 7 33 33 H 1.08997 * 109.47812 * 300.00218 * 11 10 9 34 34 H 1.09006 * 109.47070 * 60.00819 * 11 10 9 35 35 H 1.09000 * 109.47637 * 300.00893 * 12 11 10 36 36 H 1.09006 * 109.46386 * 60.00571 * 12 11 10 37 37 H 1.09000 * 110.36500 * 274.74848 * 16 15 13 38 38 H 1.09000 * 110.36624 * 37.06977 * 16 15 13 39 39 H 1.09005 * 111.19198 * 279.19293 * 17 16 15 40 40 H 1.08997 * 110.93754 * 155.29001 * 17 16 15 41 41 H 1.08000 * 120.44935 * 359.97438 * 22 21 20 42 42 H 1.08005 * 119.58328 * 180.27138 * 23 22 21 43 43 H 1.07998 * 119.59045 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.45570 * 180.02562 * 26 25 24 45 45 H 1.09002 * 109.88286 * 300.44579 * 27 15 13 46 46 H 1.09003 * 109.87594 * 61.44876 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9870 -0.0012 12 6 2.4747 -6.1500 -0.0031 13 6 1.7212 -7.4551 -0.0031 14 8 0.5084 -7.4551 -0.0022 15 7 2.3951 -8.6222 -0.0042 16 6 3.8622 -8.7673 -0.0118 17 6 4.1232 -10.1668 0.6046 18 6 2.9424 -10.9866 0.0206 19 1 3.1736 -11.3317 -0.9872 20 8 2.6198 -12.0901 0.8693 21 6 3.2578 -13.2630 0.6244 22 6 2.9279 -14.4166 1.3315 23 6 3.5964 -15.5902 1.0497 24 7 4.5435 -15.6252 0.1316 25 6 4.8878 -14.5525 -0.5555 26 6 4.2626 -13.3422 -0.3367 27 6 1.7890 -9.9617 -0.0048 28 1 -0.4850 -0.8400 0.0004 29 1 0.6247 -2.5572 0.8896 30 1 0.6241 -2.5566 -0.8903 31 1 2.8714 -3.6039 -0.8922 32 1 2.8727 -3.6047 0.8878 33 1 0.8547 -5.0450 0.8894 34 1 0.8528 -5.0447 -0.8906 35 1 3.1001 -6.0919 -0.8939 36 1 3.1026 -6.0925 0.8861 37 1 4.2425 -8.7227 -1.0323 38 1 4.3233 -7.9919 0.6000 39 1 4.0749 -10.1333 1.6930 40 1 5.0801 -10.5674 0.2701 41 1 2.1571 -14.3934 2.0876 42 1 3.3439 -16.4906 1.5902 43 1 5.6680 -14.6231 -1.2988 44 1 4.5488 -12.4681 -0.9027 45 1 1.1633 -10.0859 0.8790 46 1 1.1895 -10.0968 -0.9051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588165715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:10 Heat of formation + Delta-G solvation = -78.045775 kcal Electronic energy + Delta-G solvation = -25121.638678 eV Core-core repulsion = 21395.908728 eV Total energy + Delta-G solvation = -3725.729950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.89063 -41.05326 -39.63861 -37.87422 -36.87921 -34.81696 -33.00760 -32.20873 -31.94275 -31.22112 -29.83801 -27.21011 -25.43454 -24.43706 -24.19826 -23.73285 -22.22605 -21.85843 -20.35828 -19.78384 -18.84798 -18.30568 -17.60359 -17.39394 -16.77357 -16.69670 -16.34174 -16.21752 -15.77532 -15.63093 -15.35436 -15.04875 -14.96179 -14.65994 -14.55253 -14.32655 -14.15144 -13.81908 -13.77861 -13.42043 -13.02140 -12.87060 -12.68061 -12.49581 -12.35836 -12.23202 -12.05368 -11.94966 -11.83862 -11.63901 -11.49980 -11.04498 -10.62174 -10.54404 -10.54322 -10.21219 -9.92709 -9.84054 -8.69271 -6.40080 0.12669 0.31183 1.46436 1.49877 1.53036 1.62628 1.81574 2.16711 2.58635 2.83190 3.14353 3.16221 3.34511 3.56500 3.62482 3.70459 3.76409 3.90266 3.92944 4.01558 4.05518 4.19278 4.22285 4.35727 4.45770 4.51686 4.53984 4.60499 4.63863 4.69665 4.73492 4.78454 4.82014 4.86041 5.00156 5.02748 5.06628 5.09723 5.18443 5.20257 5.48628 5.55684 5.57389 6.00156 6.15798 6.18861 6.29524 6.56197 7.01590 7.03855 7.44322 8.71001 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.047396 B = 0.001649 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.621810 B =16979.760428 C =17350.881428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.046 4.046 3 Si 1.122 2.878 4 H -0.286 1.286 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.619 4.619 8 H 0.059 0.941 9 C 0.001 3.999 10 C -0.088 4.088 11 C -0.097 4.097 12 C -0.120 4.120 13 C 0.526 3.474 14 O -0.588 6.588 15 N -0.620 5.620 16 C 0.093 3.907 17 C -0.146 4.146 18 C 0.077 3.923 19 H 0.118 0.882 20 O -0.311 6.311 21 C 0.157 3.843 22 C -0.217 4.217 23 C 0.128 3.872 24 N -0.538 5.538 25 C 0.128 3.872 26 C -0.258 4.258 27 C 0.107 3.893 28 H 0.252 0.748 29 H -0.019 1.019 30 H -0.018 1.018 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.122 0.878 41 H 0.149 0.851 42 H 0.183 0.817 43 H 0.182 0.818 44 H 0.165 0.835 45 H 0.061 0.939 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.827 -32.530 -0.520 36.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.242 4.242 3 Si 0.942 3.058 4 H -0.212 1.212 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.657 4.657 8 H 0.077 0.923 9 C -0.036 4.036 10 C -0.126 4.126 11 C -0.136 4.136 12 C -0.159 4.159 13 C 0.317 3.683 14 O -0.468 6.468 15 N -0.355 5.355 16 C -0.028 4.028 17 C -0.184 4.184 18 C 0.021 3.979 19 H 0.136 0.864 20 O -0.222 6.222 21 C 0.104 3.896 22 C -0.238 4.238 23 C -0.027 4.027 24 N -0.251 5.251 25 C -0.028 4.028 26 C -0.279 4.279 27 C -0.016 4.016 28 H 0.061 0.939 29 H -0.001 1.001 30 H 0.000 1.000 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.141 0.859 41 H 0.167 0.833 42 H 0.200 0.800 43 H 0.199 0.801 44 H 0.183 0.817 45 H 0.079 0.921 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 15.225 -31.545 -0.523 35.030 hybrid contribution -1.194 -0.800 0.218 1.454 sum 14.031 -32.344 -0.305 35.258 Atomic orbital electron populations 1.70919 1.08191 1.29681 1.49048 1.27617 0.96594 1.07320 0.92701 0.82895 0.74051 0.70600 0.78239 1.21165 1.19010 1.19095 1.22562 0.95001 0.93277 1.54837 0.92314 1.19247 0.95425 0.95311 0.93602 1.21331 0.97549 0.92192 1.01525 1.21277 0.97575 0.93653 1.01056 1.21637 0.98786 0.88680 1.06789 1.20974 0.87258 0.85463 0.74621 1.90709 1.16473 1.87785 1.51834 1.48461 1.09195 1.04349 1.73485 1.22756 0.78184 0.98318 1.03581 1.23408 0.99020 0.93860 1.02115 1.23516 0.94765 0.84352 0.95303 0.86399 1.86087 1.63057 1.17648 1.55448 1.19562 0.90820 0.85743 0.93521 1.21774 1.05657 0.91616 1.04733 1.23026 0.89569 0.97502 0.92652 1.67770 1.16365 1.32234 1.08722 1.23072 0.96931 0.86938 0.95866 1.22508 1.00346 1.02325 1.02683 1.21699 0.95512 0.81671 1.02697 0.93869 1.00087 0.99990 0.91827 0.91999 0.93950 0.93744 0.85980 0.86304 0.87887 0.87949 0.89983 0.85949 0.83296 0.79985 0.80076 0.81735 0.92085 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.85 13.65 21.45 0.29 -60.55 16 2 C -0.05 -2.74 5.46 84.65 0.46 -2.27 16 3 Si 1.12 50.70 29.90 68.60 2.05 52.75 16 4 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.62 -36.20 9.11 25.60 0.23 -35.97 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.00 0.07 4.28 29.85 0.13 0.19 16 10 C -0.09 -3.58 5.15 30.59 0.16 -3.42 16 11 C -0.10 -3.47 4.50 30.60 0.14 -3.34 16 12 C -0.12 -2.86 4.70 29.85 0.14 -2.72 16 13 C 0.53 14.38 7.85 87.66 0.69 15.07 16 14 O -0.59 -22.44 16.31 -3.02 -0.05 -22.49 16 15 N -0.62 -11.62 3.32 -811.33 -2.70 -14.32 16 16 C 0.09 0.80 6.70 86.93 0.58 1.39 16 17 C -0.15 -1.01 6.68 32.06 0.21 -0.80 16 18 C 0.08 0.82 2.74 31.78 0.09 0.90 16 19 H 0.12 0.73 6.30 -2.39 -0.02 0.72 16 20 O -0.31 -4.58 9.89 -90.63 -0.90 -5.48 16 21 C 0.16 2.07 6.72 22.77 0.15 2.22 16 22 C -0.22 -2.75 10.08 22.46 0.23 -2.52 16 23 C 0.13 1.53 11.17 84.61 0.95 2.48 16 24 N -0.54 -7.86 10.36 -196.09 -2.03 -9.89 16 25 C 0.13 1.34 11.17 84.61 0.95 2.28 16 26 C -0.26 -2.38 8.99 22.46 0.20 -2.18 16 27 C 0.11 1.91 6.64 86.73 0.58 2.49 16 28 H 0.25 16.71 7.22 -92.71 -0.67 16.04 16 29 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 30 H -0.02 -1.07 8.01 -2.39 -0.02 -1.09 16 31 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.04 1.73 8.10 -2.38 -0.02 1.71 16 35 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.12 2.24 7.85 -2.38 -0.02 2.22 16 37 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.10 0.68 7.48 -2.39 -0.02 0.67 16 39 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.12 0.17 7.82 -2.39 -0.02 0.16 16 41 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 42 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 43 H 0.18 0.83 8.06 -2.91 -0.02 0.81 16 44 H 0.17 0.57 5.80 -2.91 -0.02 0.56 16 45 H 0.06 1.36 8.06 -2.39 -0.02 1.34 16 46 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -83.59 380.24 3.61 -79.99 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 1.06 Total: 6.19 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 5.88 Total: -26.20 kcal Atomic # 7 Polarization: -80.33 SS G_CDS: -4.44 Total: -84.76 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.95 Total: -27.97 kcal Atomic # 14 Polarization: 50.70 SS G_CDS: 2.05 Total: 52.75 kcal Total: -83.59 3.61 -79.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588165715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.941 kcal (2) G-P(sol) polarization free energy of solvation -83.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds