Wall clock time and date at job start Tue Mar 31 2020 12:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99705 * 2 1 4 4 H 1.48500 * 109.47308 * 239.99941 * 3 2 1 5 5 H 1.48506 * 109.47413 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47389 * 119.99917 * 3 2 1 7 7 C 1.37878 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.52989 * 109.47053 * 179.97438 * 9 7 2 11 11 O 1.42905 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.35976 * 117.00206 * 179.97438 * 11 10 9 13 13 C 1.38806 * 120.49599 * 0.25274 * 12 11 10 14 14 C 1.38779 * 118.44764 * 180.28521 * 13 12 11 15 15 C 1.38087 * 119.35199 * 359.72803 * 14 13 12 16 16 N 1.31955 * 120.95549 * 359.97438 * 15 14 13 17 17 C 1.32270 * 121.69446 * 0.02562 * 16 15 14 18 18 N 1.39570 * 119.73038 * 179.97438 * 17 16 15 19 19 C 1.34777 * 120.00118 * 359.97438 * 18 17 16 20 20 O 1.21286 * 119.99822 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00161 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.46912 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.46886 * 180.02562 * 22 21 19 24 24 C 1.53000 * 109.46886 * 180.02562 * 23 22 21 25 25 C 1.53002 * 117.49654 * 243.73967 * 24 23 22 26 26 C 1.53012 * 117.49602 * 175.08431 * 24 23 22 27 27 H 0.97002 * 120.00296 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46895 * 59.99674 * 9 7 2 29 29 H 1.09002 * 109.46843 * 300.00120 * 9 7 2 30 30 H 1.08996 * 109.47514 * 60.00081 * 10 9 7 31 31 H 1.09002 * 109.47416 * 299.99796 * 10 9 7 32 32 H 1.08003 * 120.77635 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.32582 * 179.70497 * 14 13 12 34 34 H 1.07999 * 119.51972 * 180.02562 * 15 14 13 35 35 H 0.97005 * 120.00420 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.47152 * 60.00245 * 21 19 18 37 37 H 1.09001 * 109.46980 * 300.00345 * 21 19 18 38 38 H 1.09001 * 109.47194 * 299.99742 * 22 21 19 39 39 H 1.08992 * 109.47399 * 59.99914 * 22 21 19 40 40 H 1.09001 * 109.47109 * 299.99380 * 23 22 21 41 41 H 1.09002 * 109.47508 * 59.99571 * 23 22 21 42 42 H 1.08997 * 115.55341 * 29.41508 * 24 23 22 43 43 H 1.09000 * 117.49888 * 0.02562 * 25 24 23 44 44 H 1.08997 * 117.49823 * 145.01961 * 25 24 23 45 45 H 1.08998 * 117.49442 * 214.98050 * 26 24 23 46 46 H 1.08998 * 117.49828 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7466 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6619 0.0005 11 8 1.5310 -4.8996 0.0011 12 6 2.2716 -6.0399 0.0007 13 6 3.6583 -5.9793 0.0049 14 6 4.3721 -7.1694 -0.0018 15 6 3.6881 -8.3689 -0.0067 16 7 2.3688 -8.3980 -0.0046 17 6 1.6493 -7.2881 0.0017 18 7 0.2558 -7.3667 0.0032 19 6 -0.3514 -8.5699 -0.0024 20 8 0.3132 -9.5845 -0.0082 21 6 -1.8560 -8.6547 -0.0014 22 6 -2.2840 -10.1236 -0.0079 23 6 -3.8115 -10.2097 -0.0075 24 6 -4.2395 -11.6786 -0.0134 25 6 -5.0142 -12.1839 -1.2322 26 6 -5.7354 -11.9791 0.1024 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8905 31 1 2.8721 -3.6042 -0.8895 32 1 4.1698 -5.0281 0.0083 33 1 5.4520 -7.1575 -0.0035 34 1 4.2408 -9.2967 -0.0116 35 1 -0.2758 -6.5552 0.0082 36 1 -2.2485 -8.1576 -0.8885 37 1 -2.2468 -8.1667 0.8914 38 1 -1.8931 -10.6120 -0.9006 39 1 -1.8915 -10.6204 0.8793 40 1 -4.2028 -9.7213 0.8849 41 1 -4.2037 -9.7130 -0.8950 42 1 -3.5484 -12.3716 0.4664 43 1 -5.2185 -11.4699 -2.0301 44 1 -4.8329 -13.2093 -1.5541 45 1 -6.0281 -12.8699 0.6580 46 1 -6.4145 -11.1303 0.1823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589773613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:38 Heat of formation + Delta-G solvation = -27.760495 kcal Electronic energy + Delta-G solvation = -25227.052232 eV Core-core repulsion = 21503.502816 eV Total energy + Delta-G solvation = -3723.549416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86406 -39.33107 -37.98684 -37.72679 -34.84889 -33.92495 -33.48347 -31.63907 -30.65443 -29.37370 -27.99872 -25.43246 -23.98918 -22.92984 -22.67342 -22.16973 -20.92296 -20.72028 -20.04786 -18.31167 -17.47813 -17.15032 -16.20231 -16.16713 -15.91213 -15.63470 -15.44630 -14.96207 -14.64393 -14.58328 -14.42551 -13.99808 -13.76266 -13.52013 -12.87440 -12.61479 -12.41020 -12.34853 -12.02936 -11.93482 -11.91489 -11.81360 -11.29641 -11.08552 -11.02537 -10.98683 -10.70066 -10.68230 -10.49164 -10.19433 -10.12203 -10.05464 -9.78353 -9.43468 -9.20989 -9.00453 -8.53051 -7.65426 -6.18865 -4.23930 1.21502 1.45194 2.75297 2.92241 3.23081 3.27781 3.28835 3.51334 3.52820 4.01861 4.26112 4.32978 4.45963 4.63558 4.65150 4.74526 4.88605 4.93333 4.95394 5.07971 5.12423 5.17886 5.28182 5.34335 5.40185 5.46619 5.48294 5.54149 5.56894 5.68076 5.81769 5.85645 5.89035 5.93860 6.04810 6.06648 6.17917 6.19889 6.37102 6.53330 6.63949 7.29520 7.33761 7.51455 7.63170 7.84496 8.08610 8.13363 8.38508 8.81009 9.40971 10.92477 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.002369 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.713845 B =11817.098772 C =14036.184671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.066 3.934 13 C -0.148 4.148 14 C -0.161 4.161 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.328 3.672 18 N -0.654 5.654 19 C 0.503 3.497 20 O -0.482 6.482 21 C -0.141 4.141 22 C -0.100 4.100 23 C -0.090 4.090 24 C -0.151 4.151 25 C -0.182 4.182 26 C -0.184 4.184 27 H 0.265 0.735 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.424 0.576 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.958 -19.764 -0.206 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.015 3.985 13 C -0.175 4.175 14 C -0.182 4.182 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.095 3.905 18 N -0.302 5.302 19 C 0.289 3.711 20 O -0.352 6.352 21 C -0.181 4.181 22 C -0.138 4.138 23 C -0.128 4.128 24 C -0.169 4.169 25 C -0.219 4.219 26 C -0.221 4.221 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.262 0.738 36 H 0.114 0.886 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.376 -21.172 -0.215 21.620 hybrid contribution 0.933 2.375 -0.007 2.552 sum -3.444 -18.797 -0.222 19.111 Atomic orbital electron populations 1.69948 1.06097 1.27206 1.49411 1.24979 0.94926 0.99411 0.94788 0.86539 0.79515 0.82525 0.78756 1.20071 1.21077 1.20065 1.20910 0.93031 0.90143 1.52649 0.92388 1.19118 0.94123 0.88898 0.98877 1.23392 0.97254 0.80318 0.99825 1.86097 1.36241 1.12898 1.87598 1.19616 0.91151 0.87152 1.00613 1.21613 0.92275 1.00342 1.03276 1.21887 1.01174 0.92546 1.02599 1.22411 0.88850 0.97869 0.99096 1.67626 1.07838 1.26947 1.13534 1.17853 0.85059 0.86895 1.00671 1.43581 1.03688 1.10668 1.72282 1.20948 0.90728 0.82937 0.76522 1.90783 1.66172 1.33959 1.44336 1.21724 0.91395 1.00084 1.04884 1.21310 0.94542 0.94123 1.03793 1.21213 0.95620 0.93741 1.02209 1.22355 0.94241 0.97821 1.02510 1.23049 1.04827 1.02321 0.91737 1.22982 0.95068 1.03286 1.00778 0.92573 0.95357 0.95347 0.92962 0.92953 0.83769 0.84821 0.82664 0.73820 0.88567 0.88539 0.90996 0.91053 0.91390 0.91652 0.87720 0.88781 0.89035 0.89002 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.43 13.29 55.43 0.74 -24.70 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.08 9.11 -34.44 -0.31 -14.39 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.03 0.66 5.34 -27.89 -0.15 0.51 16 10 C 0.07 1.30 4.70 37.15 0.17 1.47 16 11 O -0.32 -5.79 9.39 -19.66 -0.18 -5.98 16 12 C 0.07 1.11 6.72 -38.91 -0.26 0.85 16 13 C -0.15 -2.18 9.14 -39.17 -0.36 -2.53 16 14 C -0.16 -2.03 10.10 -39.44 -0.40 -2.42 16 15 C 0.07 1.02 11.17 -17.55 -0.20 0.83 16 16 N -0.44 -7.50 7.87 -12.23 -0.10 -7.60 16 17 C 0.33 5.47 7.45 -154.45 -1.15 4.32 16 18 N -0.65 -9.47 5.39 -11.29 -0.06 -9.53 16 19 C 0.50 6.96 7.79 -10.98 -0.09 6.88 16 20 O -0.48 -8.34 14.24 5.55 0.08 -8.26 16 21 C -0.14 -1.32 5.70 -27.88 -0.16 -1.48 16 22 C -0.10 -0.93 4.46 -26.73 -0.12 -1.05 16 23 C -0.09 -0.69 5.49 -26.73 -0.15 -0.84 16 24 C -0.15 -1.17 5.73 -90.61 -0.52 -1.69 16 25 C -0.18 -1.32 10.18 -26.69 -0.27 -1.59 16 26 C -0.18 -1.28 10.26 -26.69 -0.27 -1.56 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 31 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 32 H 0.14 1.96 6.44 -52.48 -0.34 1.62 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.42 5.40 8.05 -40.82 -0.33 5.08 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 39 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.47 7.88 -51.93 -0.41 0.06 16 42 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 43 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 44 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 387.21 15.07 5.84 5.84 Total: -1.00 -32.04 387.21 -10.36 -42.40 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.32 Total: 3.36 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -4.32 Total: -11.11 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.58 Total: -41.82 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.11 Total: -14.24 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.04 -10.36 -42.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589773613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.637 kcal (2) G-P(sol) polarization free energy of solvation -32.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds