Wall clock time and date at job start Tue Mar 31 2020 12:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99705 * 2 1 4 4 H 1.48500 * 109.47308 * 239.99941 * 3 2 1 5 5 H 1.48506 * 109.47413 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47389 * 119.99917 * 3 2 1 7 7 C 1.37878 * 120.00373 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99864 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.52989 * 109.47053 * 179.97438 * 9 7 2 11 11 O 1.42905 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.35976 * 117.00206 * 179.97438 * 11 10 9 13 13 C 1.38806 * 120.49599 * 0.25274 * 12 11 10 14 14 C 1.38779 * 118.44764 * 180.28521 * 13 12 11 15 15 C 1.38087 * 119.35199 * 359.72803 * 14 13 12 16 16 N 1.31955 * 120.95549 * 359.97438 * 15 14 13 17 17 C 1.32270 * 121.69446 * 0.02562 * 16 15 14 18 18 N 1.39570 * 119.73038 * 179.97438 * 17 16 15 19 19 C 1.34777 * 120.00118 * 359.97438 * 18 17 16 20 20 O 1.21286 * 119.99822 * 0.02562 * 19 18 17 21 21 C 1.50703 * 120.00161 * 180.02562 * 19 18 17 22 22 C 1.53000 * 109.46912 * 180.02562 * 21 19 18 23 23 C 1.53001 * 109.46886 * 180.02562 * 22 21 19 24 24 C 1.53000 * 109.46886 * 180.02562 * 23 22 21 25 25 C 1.53002 * 117.49654 * 243.73967 * 24 23 22 26 26 C 1.53012 * 117.49602 * 175.08431 * 24 23 22 27 27 H 0.97002 * 120.00296 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46895 * 59.99674 * 9 7 2 29 29 H 1.09002 * 109.46843 * 300.00120 * 9 7 2 30 30 H 1.08996 * 109.47514 * 60.00081 * 10 9 7 31 31 H 1.09002 * 109.47416 * 299.99796 * 10 9 7 32 32 H 1.08003 * 120.77635 * 359.97438 * 13 12 11 33 33 H 1.07997 * 120.32582 * 179.70497 * 14 13 12 34 34 H 1.07999 * 119.51972 * 180.02562 * 15 14 13 35 35 H 0.97005 * 120.00420 * 179.97438 * 18 17 16 36 36 H 1.09002 * 109.47152 * 60.00245 * 21 19 18 37 37 H 1.09001 * 109.46980 * 300.00345 * 21 19 18 38 38 H 1.09001 * 109.47194 * 299.99742 * 22 21 19 39 39 H 1.08992 * 109.47399 * 59.99914 * 22 21 19 40 40 H 1.09001 * 109.47109 * 299.99380 * 23 22 21 41 41 H 1.09002 * 109.47508 * 59.99571 * 23 22 21 42 42 H 1.08997 * 115.55341 * 29.41508 * 24 23 22 43 43 H 1.09000 * 117.49888 * 0.02562 * 25 24 23 44 44 H 1.08997 * 117.49823 * 145.01961 * 25 24 23 45 45 H 1.08998 * 117.49442 * 214.98050 * 26 24 23 46 46 H 1.08998 * 117.49828 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7466 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6619 0.0005 11 8 1.5310 -4.8996 0.0011 12 6 2.2716 -6.0399 0.0007 13 6 3.6583 -5.9793 0.0049 14 6 4.3721 -7.1694 -0.0018 15 6 3.6881 -8.3689 -0.0067 16 7 2.3688 -8.3980 -0.0046 17 6 1.6493 -7.2881 0.0017 18 7 0.2558 -7.3667 0.0032 19 6 -0.3514 -8.5699 -0.0024 20 8 0.3132 -9.5845 -0.0082 21 6 -1.8560 -8.6547 -0.0014 22 6 -2.2840 -10.1236 -0.0079 23 6 -3.8115 -10.2097 -0.0075 24 6 -4.2395 -11.6786 -0.0134 25 6 -5.0142 -12.1839 -1.2322 26 6 -5.7354 -11.9791 0.1024 27 1 -0.4851 0.8400 0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 2.8721 -3.6042 0.8905 31 1 2.8721 -3.6042 -0.8895 32 1 4.1698 -5.0281 0.0083 33 1 5.4520 -7.1575 -0.0035 34 1 4.2408 -9.2967 -0.0116 35 1 -0.2758 -6.5552 0.0082 36 1 -2.2485 -8.1576 -0.8885 37 1 -2.2468 -8.1667 0.8914 38 1 -1.8931 -10.6120 -0.9006 39 1 -1.8915 -10.6204 0.8793 40 1 -4.2028 -9.7213 0.8849 41 1 -4.2037 -9.7130 -0.8950 42 1 -3.5484 -12.3716 0.4664 43 1 -5.2185 -11.4699 -2.0301 44 1 -4.8329 -13.2093 -1.5541 45 1 -6.0281 -12.8699 0.6580 46 1 -6.4145 -11.1303 0.1823 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589773613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:37 Heat of formation + Delta-G solvation = -44.872345 kcal Electronic energy + Delta-G solvation = -25227.794258 eV Core-core repulsion = 21503.502816 eV Total energy + Delta-G solvation = -3724.291442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03228 -40.47651 -39.11406 -38.53563 -35.98492 -35.44223 -34.72816 -32.90110 -32.27901 -30.62667 -28.83798 -27.16581 -25.20619 -24.16049 -23.33705 -23.12994 -22.44480 -21.36678 -21.09332 -19.58350 -18.82892 -18.25012 -18.00894 -17.24969 -17.01637 -16.82813 -16.48370 -16.26882 -15.96851 -15.54900 -15.29500 -15.18769 -14.76362 -14.66325 -14.34499 -14.15217 -13.65253 -13.36040 -13.29508 -13.05713 -12.81419 -12.72347 -12.64625 -12.44867 -12.35290 -11.95361 -11.84952 -11.76133 -11.70009 -11.63899 -11.44552 -11.31458 -11.04508 -10.71071 -10.59776 -10.40623 -10.15584 -8.85367 -8.25150 -6.37686 0.09072 0.28445 1.42836 1.45371 1.53178 1.68636 1.88168 2.11360 2.44680 2.87614 2.94114 3.09940 3.37260 3.66487 3.75181 3.85491 3.98703 4.05564 4.08068 4.12624 4.19218 4.29372 4.30524 4.33704 4.42844 4.46832 4.71536 4.74866 4.77160 4.81409 4.89660 4.91704 4.97351 5.10102 5.13648 5.24902 5.27514 5.29994 5.31472 5.36134 5.50479 5.50960 5.53966 5.73842 6.08329 6.23577 6.33574 6.76865 6.95659 7.29589 7.32195 8.87145 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.002369 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.713845 B =11817.098772 C =14036.184671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.030 3.970 10 C 0.083 3.917 11 O -0.328 6.328 12 C 0.040 3.960 13 C -0.150 4.150 14 C -0.146 4.146 15 C 0.072 3.928 16 N -0.475 5.475 17 C 0.309 3.691 18 N -0.655 5.655 19 C 0.499 3.501 20 O -0.522 6.522 21 C -0.132 4.132 22 C -0.093 4.093 23 C -0.083 4.083 24 C -0.164 4.164 25 C -0.186 4.186 26 C -0.179 4.179 27 H 0.266 0.734 28 H 0.002 0.998 29 H 0.002 0.998 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.175 0.825 34 H 0.185 0.815 35 H 0.429 0.571 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.601 -19.623 -0.206 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.007 4.007 10 C 0.009 3.991 11 O -0.241 6.241 12 C -0.011 4.011 13 C -0.176 4.176 14 C -0.167 4.167 15 C -0.085 4.085 16 N -0.190 5.190 17 C 0.077 3.923 18 N -0.303 5.303 19 C 0.287 3.713 20 O -0.395 6.395 21 C -0.172 4.172 22 C -0.131 4.131 23 C -0.121 4.121 24 C -0.182 4.182 25 C -0.223 4.223 26 C -0.216 4.216 27 H 0.075 0.925 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.174 0.826 33 H 0.192 0.808 34 H 0.202 0.798 35 H 0.267 0.733 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.024 -21.037 -0.215 21.254 hybrid contribution 0.570 2.199 -0.007 2.271 sum -2.454 -18.838 -0.223 18.998 Atomic orbital electron populations 1.70086 1.07857 1.28190 1.50592 1.25958 0.95786 1.03426 0.94337 0.85421 0.78181 0.77650 0.79330 1.18992 1.21024 1.18977 1.21373 0.93861 0.91076 1.52046 0.91132 1.18938 0.94510 0.90932 0.96323 1.22953 0.95636 0.79651 1.00839 1.86023 1.36588 1.12984 1.88519 1.19770 0.92153 0.86300 1.02844 1.21913 0.91524 1.01812 1.02366 1.22269 1.03047 0.91081 1.00289 1.23054 0.88175 0.99752 0.97484 1.67686 1.09453 1.27267 1.14615 1.18091 0.85964 0.86968 1.01244 1.43721 1.03341 1.11224 1.72028 1.21738 0.92322 0.82097 0.75137 1.90751 1.67406 1.35054 1.46242 1.21786 0.88058 1.00557 1.06801 1.21225 0.95773 0.93739 1.02365 1.21152 0.94041 0.93903 1.02959 1.22376 0.94817 0.97815 1.03220 1.23126 1.04697 1.02610 0.91877 1.23054 0.94416 1.03736 1.00429 0.92510 0.97965 0.97944 0.91849 0.91854 0.82588 0.80751 0.79776 0.73255 0.86539 0.86437 0.92565 0.92422 0.90544 0.90895 0.88386 0.88456 0.88748 0.88403 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.03 13.29 21.45 0.28 -53.74 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.97 41.79 29.54 68.60 2.03 43.82 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.55 -29.02 9.11 25.60 0.23 -28.79 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.46 16 9 C 0.03 1.52 5.34 29.84 0.16 1.68 16 10 C 0.08 3.26 4.70 71.98 0.34 3.60 16 11 O -0.33 -12.15 9.39 -93.28 -0.88 -13.03 16 12 C 0.04 1.32 6.72 22.70 0.15 1.48 16 13 C -0.15 -4.10 9.14 22.54 0.21 -3.90 16 14 C -0.15 -3.25 10.10 22.36 0.23 -3.02 16 15 C 0.07 1.84 11.17 84.64 0.95 2.79 16 16 N -0.47 -15.86 7.87 -192.59 -1.52 -17.38 16 17 C 0.31 10.37 7.45 132.99 0.99 11.36 16 18 N -0.65 -19.33 5.39 -308.03 -1.66 -20.99 16 19 C 0.50 14.05 7.79 87.66 0.68 14.73 16 20 O -0.52 -18.53 14.24 -3.05 -0.04 -18.58 16 21 C -0.13 -2.41 5.70 29.85 0.17 -2.24 16 22 C -0.09 -1.72 4.46 30.59 0.14 -1.59 16 23 C -0.08 -1.19 5.49 30.59 0.17 -1.02 16 24 C -0.16 -2.46 5.73 -10.79 -0.06 -2.52 16 25 C -0.19 -2.55 10.18 30.62 0.31 -2.24 16 26 C -0.18 -2.30 10.26 30.62 0.31 -1.99 16 27 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.06 2.31 7.69 -2.39 -0.02 2.29 16 31 H 0.06 2.31 7.71 -2.39 -0.02 2.29 16 32 H 0.16 3.84 6.44 -2.91 -0.02 3.82 16 33 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.19 3.45 8.06 -2.91 -0.02 3.43 16 35 H 0.43 11.26 8.05 -92.70 -0.75 10.51 16 36 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.21 8.10 -2.39 -0.02 1.19 16 39 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.94 7.88 -2.39 -0.02 0.92 16 42 H 0.10 1.57 8.08 -2.39 -0.02 1.56 16 43 H 0.10 1.25 8.03 -2.39 -0.02 1.24 16 44 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.60 387.21 3.88 -66.72 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.23 Total: 24.17 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.44 Total: -11.00 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -2.89 Total: -92.11 kcal Atomic # 8 Polarization: -30.68 SS G_CDS: -0.92 Total: -31.60 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -70.60 3.88 -66.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589773613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.850 kcal (2) G-P(sol) polarization free energy of solvation -70.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds