Wall clock time and date at job start Tue Mar 31 2020 12:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38262 * 119.99605 * 2 1 4 4 C 1.38212 * 119.99982 * 180.25431 * 3 2 1 5 5 C 1.38262 * 119.99502 * 359.76790 * 4 3 2 6 6 C 1.38202 * 120.00322 * 0.02562 * 5 4 3 7 7 C 1.38206 * 120.00136 * 179.79395 * 2 1 3 8 8 C 1.50700 * 120.00414 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46825 * 324.73234 * 8 7 2 10 10 C 1.52999 * 109.46589 * 84.73054 * 8 7 2 11 11 N 1.46492 * 109.47398 * 204.72942 * 8 7 2 12 12 C 1.34774 * 120.00106 * 154.99857 * 11 8 7 13 13 O 1.21587 * 120.00063 * 0.02562 * 12 11 8 14 14 N 1.34782 * 120.00483 * 179.97438 * 12 11 8 15 15 C 1.47028 * 125.64307 * 0.03239 * 14 12 11 16 16 C 1.54320 * 107.26701 * 178.89770 * 15 14 12 17 17 C 1.55153 * 102.94383 * 337.80525 * 16 15 14 18 18 O 1.42895 * 111.00660 * 277.38826 * 17 16 15 19 19 C 1.50702 * 111.00367 * 153.57571 * 17 16 15 20 20 H 1.08002 * 120.00299 * 3.18452 * 19 17 16 21 21 C 1.37884 * 119.99942 * 182.90010 * 19 17 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 17 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 17 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.47463 * 125.63121 * 179.97438 * 14 12 11 28 28 H 1.08998 * 109.47319 * 270.20454 * 1 2 3 29 29 H 1.08999 * 109.47459 * 30.21125 * 1 2 3 30 30 H 1.09005 * 109.46809 * 150.20998 * 1 2 3 31 31 H 1.07999 * 120.00232 * 0.03943 * 3 2 1 32 32 H 1.07997 * 120.00425 * 179.79062 * 4 3 2 33 33 H 1.08001 * 119.99602 * 179.97438 * 5 4 3 34 34 H 1.08007 * 120.00136 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47403 * 60.00238 * 10 8 7 36 36 H 1.09012 * 109.46959 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47347 * 299.99554 * 10 8 7 38 38 H 0.97000 * 120.00329 * 335.00203 * 11 8 7 39 39 H 1.09000 * 109.88086 * 59.48194 * 15 14 12 40 40 H 1.09003 * 109.87956 * 298.31182 * 15 14 12 41 41 H 1.09004 * 110.71836 * 219.43859 * 16 15 14 42 42 H 1.09006 * 110.72351 * 96.16930 * 16 15 14 43 43 H 0.96695 * 114.00567 * 176.81707 * 18 17 16 44 44 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.34826 * 85.33075 * 27 14 12 46 46 H 1.09002 * 110.40574 * 322.99292 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 -0.0053 5 6 4.2717 0.0001 -0.0058 6 6 3.5807 -1.1968 -0.0015 7 6 2.1981 -1.1969 0.0043 8 6 1.4447 -2.5020 0.0096 9 1 0.5366 -2.3949 0.6029 10 6 1.0745 -2.8829 -1.4253 11 7 2.2873 -3.5499 0.5910 12 6 1.7203 -4.6312 1.1617 13 8 0.5095 -4.7373 1.1935 14 7 2.4954 -5.5956 1.6962 15 6 3.9654 -5.5951 1.7260 16 6 4.4092 -6.8792 2.4579 17 6 3.1582 -7.2509 3.2971 18 8 3.1195 -6.5064 4.5162 19 6 3.1119 -8.7322 3.5705 20 1 3.9179 -9.3686 3.2361 21 6 2.0432 -9.2742 4.2526 22 7 1.0617 -8.4993 4.6597 23 14 1.9894 -11.1091 4.5981 24 1 3.2052 -11.7538 4.0400 25 1 1.9388 -11.3353 6.0650 26 1 0.7818 -11.6971 3.9647 27 6 2.0091 -6.8253 2.3490 28 1 -0.3634 0.0037 1.0276 29 1 -0.3634 0.8881 -0.5171 30 1 -0.3633 -0.8919 -0.5106 31 1 1.6583 2.1327 0.0006 32 1 4.1204 2.1328 -0.0087 33 1 5.3517 0.0002 -0.0103 34 1 4.1208 -2.1321 -0.0022 35 1 1.9826 -2.9899 -2.0186 36 1 0.5292 -3.8268 -1.4215 37 1 0.4476 -2.1032 -1.8579 38 1 3.2533 -3.4656 0.5654 39 1 4.3249 -4.7183 2.2647 40 1 4.3567 -5.5941 0.7087 41 1 5.2625 -6.6784 3.1057 42 1 4.6431 -7.6689 1.7438 43 1 2.3308 -6.6689 5.0514 44 1 0.3097 -8.8807 5.1393 45 1 1.8231 -7.6007 1.6059 46 1 1.1032 -6.6201 2.9193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591888808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:55 Heat of formation + Delta-G solvation = -53.923795 kcal Electronic energy + Delta-G solvation = -27168.590576 eV Core-core repulsion = 23443.906634 eV Total energy + Delta-G solvation = -3724.683942 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31124 -39.26003 -37.42164 -35.29352 -34.21981 -33.11990 -32.16799 -31.29781 -29.99497 -29.14368 -27.71904 -27.10157 -25.10480 -23.82809 -22.81612 -21.74169 -20.58868 -19.60937 -19.36803 -17.79404 -17.09599 -16.52779 -16.03931 -15.34813 -15.21549 -15.02782 -14.65877 -14.44527 -14.26440 -14.04655 -13.60962 -13.42346 -13.25166 -12.98923 -12.89210 -12.67126 -12.40002 -12.23087 -12.06753 -11.95415 -11.66356 -11.61244 -11.42095 -11.13898 -11.04731 -10.79971 -10.70833 -10.58015 -10.45355 -10.16743 -9.59784 -9.36258 -9.01998 -8.91385 -8.68584 -8.64699 -8.33678 -7.66572 -6.26694 -4.36194 1.16757 1.21295 3.11925 3.21523 3.29741 3.32965 3.58036 3.77619 4.26705 4.47352 4.49880 4.64508 4.74469 4.85825 5.00483 5.11151 5.24351 5.33134 5.38803 5.42512 5.47706 5.48866 5.57481 5.65781 5.70972 5.78810 5.85366 5.92596 5.99486 6.03795 6.12660 6.22456 6.29998 6.33710 6.43556 6.52552 6.72134 6.82340 6.85261 6.89845 6.99309 7.25294 7.34804 7.65879 7.76276 8.03973 8.55475 8.68366 9.15764 9.33028 9.43780 10.80498 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.002959 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.325083 B = 9461.691542 C = 9920.828352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.075 4.075 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.111 4.111 7 C -0.085 4.085 8 C 0.201 3.799 9 H 0.098 0.902 10 C -0.158 4.158 11 N -0.747 5.747 12 C 0.718 3.282 13 O -0.596 6.596 14 N -0.627 5.627 15 C 0.105 3.895 16 C -0.116 4.116 17 C 0.248 3.752 18 O -0.583 6.583 19 C -0.537 4.537 20 H 0.067 0.933 21 C 0.070 3.930 22 N -0.892 5.892 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.113 3.887 28 H 0.074 0.926 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.391 0.609 39 H 0.054 0.946 40 H 0.049 0.951 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.270 0.730 45 H 0.057 0.943 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.104 16.633 -10.755 20.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.139 4.139 6 C -0.130 4.130 7 C -0.086 4.086 8 C 0.095 3.905 9 H 0.116 0.884 10 C -0.217 4.217 11 N -0.406 5.406 12 C 0.420 3.580 13 O -0.475 6.475 14 N -0.364 5.364 15 C -0.019 4.019 16 C -0.154 4.154 17 C 0.207 3.793 18 O -0.393 6.393 19 C -0.575 4.575 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.531 5.531 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.009 4.009 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.227 0.773 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.234 0.766 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.546 16.797 -10.882 20.326 hybrid contribution -0.034 -1.088 0.385 1.154 sum 3.512 15.709 -10.497 19.218 Atomic orbital electron populations 1.20939 0.91056 1.03143 1.02927 1.19696 0.96177 0.92243 0.99415 1.21005 0.94274 0.97286 1.01044 1.21121 0.94309 0.98005 1.00466 1.21094 0.99879 0.92364 1.00567 1.20889 0.93583 0.98138 1.00353 1.19882 0.93896 0.94299 1.00492 1.19533 0.93453 0.82698 0.94818 0.88388 1.22199 1.01744 1.02434 0.95290 1.45320 1.09414 1.21622 1.64202 1.15496 0.84943 0.79293 0.78290 1.90874 1.12052 1.79393 1.65199 1.47924 1.06195 1.22070 1.60213 1.21928 0.81284 0.99881 0.98781 1.22589 0.99528 0.94950 0.98295 1.19629 0.88120 0.89819 0.81690 1.86076 1.48806 1.69494 1.34886 1.21514 1.06470 0.92115 1.37444 0.91480 1.25089 0.94860 0.98918 0.94417 1.69669 1.09568 1.35705 1.38187 0.86349 0.78133 0.84306 0.78097 1.19607 1.20774 1.20776 1.23149 1.00963 0.81704 0.95041 0.90735 0.91420 0.90783 0.86019 0.86151 0.86002 0.86260 0.92524 0.91279 0.91707 0.77283 0.92726 0.93239 0.90793 0.90441 0.76558 0.92010 0.92503 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.22 36.01 0.33 -0.81 16 2 C -0.07 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.11 9.70 -39.58 -0.38 -1.50 16 4 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 5 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 6 C -0.11 -1.22 9.24 -39.59 -0.37 -1.58 16 7 C -0.09 -1.01 5.06 -104.62 -0.53 -1.54 16 8 C 0.20 2.76 2.09 -69.09 -0.14 2.62 16 9 H 0.10 1.53 6.44 -51.93 -0.33 1.19 16 10 C -0.16 -1.95 9.27 37.16 0.34 -1.61 16 11 N -0.75 -11.73 4.96 -59.82 -0.30 -12.02 16 12 C 0.72 14.79 8.45 -86.92 -0.73 14.05 16 13 O -0.60 -14.42 16.26 5.29 0.09 -14.33 16 14 N -0.63 -13.15 3.33 -176.18 -0.59 -13.73 16 15 C 0.10 1.84 6.15 -3.06 -0.02 1.82 16 16 C -0.12 -2.28 6.13 -24.90 -0.15 -2.43 16 17 C 0.25 6.01 0.88 -89.61 -0.08 5.93 16 18 O -0.58 -15.01 13.17 -35.23 -0.46 -15.47 16 19 C -0.54 -13.93 8.25 -34.44 -0.28 -14.22 16 20 H 0.07 1.70 7.78 -52.49 -0.41 1.30 16 21 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 22 N -0.89 -23.91 10.69 55.43 0.59 -23.32 16 23 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 C 0.11 2.76 5.52 -2.49 -0.01 2.74 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 30 H 0.07 0.70 5.40 -51.93 -0.28 0.42 16 31 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.12 1.19 6.07 -52.48 -0.32 0.87 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.06 0.67 6.88 -51.93 -0.36 0.31 16 38 H 0.39 5.29 5.19 -40.82 -0.21 5.08 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 43 H 0.38 10.22 7.24 45.56 0.33 10.55 16 44 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 45 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 46 H 0.08 2.29 7.48 -51.93 -0.39 1.90 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -30.50 368.45 -9.83 -40.34 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: -6.16 Total: 16.90 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.53 Total: 0.75 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.29 Total: -49.07 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.38 Total: -29.80 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.50 -9.83 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591888808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.585 kcal (2) G-P(sol) polarization free energy of solvation -30.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds