Wall clock time and date at job start Tue Mar 31 2020 12:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38262 * 119.99605 * 2 1 4 4 C 1.38212 * 119.99982 * 180.25431 * 3 2 1 5 5 C 1.38262 * 119.99502 * 359.76790 * 4 3 2 6 6 C 1.38202 * 120.00322 * 0.02562 * 5 4 3 7 7 C 1.38206 * 120.00136 * 179.79395 * 2 1 3 8 8 C 1.50700 * 120.00414 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46825 * 324.73234 * 8 7 2 10 10 C 1.52999 * 109.46589 * 84.73054 * 8 7 2 11 11 N 1.46492 * 109.47398 * 204.72942 * 8 7 2 12 12 C 1.34774 * 120.00106 * 154.99857 * 11 8 7 13 13 O 1.21587 * 120.00063 * 0.02562 * 12 11 8 14 14 N 1.34782 * 120.00483 * 179.97438 * 12 11 8 15 15 C 1.47028 * 125.64307 * 0.03239 * 14 12 11 16 16 C 1.54320 * 107.26701 * 178.89770 * 15 14 12 17 17 C 1.55153 * 102.94383 * 337.80525 * 16 15 14 18 18 O 1.42895 * 111.00660 * 277.38826 * 17 16 15 19 19 C 1.50702 * 111.00367 * 153.57571 * 17 16 15 20 20 H 1.08002 * 120.00299 * 3.18452 * 19 17 16 21 21 C 1.37884 * 119.99942 * 182.90010 * 19 17 16 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 17 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 17 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 C 1.47463 * 125.63121 * 179.97438 * 14 12 11 28 28 H 1.08998 * 109.47319 * 270.20454 * 1 2 3 29 29 H 1.08999 * 109.47459 * 30.21125 * 1 2 3 30 30 H 1.09005 * 109.46809 * 150.20998 * 1 2 3 31 31 H 1.07999 * 120.00232 * 0.03943 * 3 2 1 32 32 H 1.07997 * 120.00425 * 179.79062 * 4 3 2 33 33 H 1.08001 * 119.99602 * 179.97438 * 5 4 3 34 34 H 1.08007 * 120.00136 * 179.97438 * 6 5 4 35 35 H 1.08996 * 109.47403 * 60.00238 * 10 8 7 36 36 H 1.09012 * 109.46959 * 180.02562 * 10 8 7 37 37 H 1.09004 * 109.47347 * 299.99554 * 10 8 7 38 38 H 0.97000 * 120.00329 * 335.00203 * 11 8 7 39 39 H 1.09000 * 109.88086 * 59.48194 * 15 14 12 40 40 H 1.09003 * 109.87956 * 298.31182 * 15 14 12 41 41 H 1.09004 * 110.71836 * 219.43859 * 16 15 14 42 42 H 1.09006 * 110.72351 * 96.16930 * 16 15 14 43 43 H 0.96695 * 114.00567 * 176.81707 * 18 17 16 44 44 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 45 45 H 1.08998 * 110.34826 * 85.33075 * 27 14 12 46 46 H 1.09002 * 110.40574 * 322.99292 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 -0.0053 5 6 4.2717 0.0001 -0.0058 6 6 3.5807 -1.1968 -0.0015 7 6 2.1981 -1.1969 0.0043 8 6 1.4447 -2.5020 0.0096 9 1 0.5366 -2.3949 0.6029 10 6 1.0745 -2.8829 -1.4253 11 7 2.2873 -3.5499 0.5910 12 6 1.7203 -4.6312 1.1617 13 8 0.5095 -4.7373 1.1935 14 7 2.4954 -5.5956 1.6962 15 6 3.9654 -5.5951 1.7260 16 6 4.4092 -6.8792 2.4579 17 6 3.1582 -7.2509 3.2971 18 8 3.1195 -6.5064 4.5162 19 6 3.1119 -8.7322 3.5705 20 1 3.9179 -9.3686 3.2361 21 6 2.0432 -9.2742 4.2526 22 7 1.0617 -8.4993 4.6597 23 14 1.9894 -11.1091 4.5981 24 1 3.2052 -11.7538 4.0400 25 1 1.9388 -11.3353 6.0650 26 1 0.7818 -11.6971 3.9647 27 6 2.0091 -6.8253 2.3490 28 1 -0.3634 0.0037 1.0276 29 1 -0.3634 0.8881 -0.5171 30 1 -0.3633 -0.8919 -0.5106 31 1 1.6583 2.1327 0.0006 32 1 4.1204 2.1328 -0.0087 33 1 5.3517 0.0002 -0.0103 34 1 4.1208 -2.1321 -0.0022 35 1 1.9826 -2.9899 -2.0186 36 1 0.5292 -3.8268 -1.4215 37 1 0.4476 -2.1032 -1.8579 38 1 3.2533 -3.4656 0.5654 39 1 4.3249 -4.7183 2.2647 40 1 4.3567 -5.5941 0.7087 41 1 5.2625 -6.6784 3.1057 42 1 4.6431 -7.6689 1.7438 43 1 2.3308 -6.6689 5.0514 44 1 0.3097 -8.8807 5.1393 45 1 1.8231 -7.6007 1.6059 46 1 1.1032 -6.6201 2.9193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591888808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:54 Heat of formation + Delta-G solvation = -73.613030 kcal Electronic energy + Delta-G solvation = -27169.444365 eV Core-core repulsion = 23443.906634 eV Total energy + Delta-G solvation = -3725.537732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55742 -40.48015 -39.08187 -36.54929 -36.05656 -34.18601 -33.96717 -32.54844 -31.37594 -30.23952 -29.48576 -27.85095 -26.95672 -24.92061 -24.20920 -22.73466 -21.62322 -21.35919 -20.78573 -19.34897 -18.92818 -17.67242 -17.10126 -17.03191 -16.79378 -16.28361 -16.05309 -15.89466 -15.31288 -15.25912 -14.81819 -14.80775 -14.63044 -14.39450 -13.97460 -13.89759 -13.71760 -13.50257 -13.28352 -13.20628 -13.04071 -12.86486 -12.78285 -12.61362 -12.47732 -12.31490 -12.19598 -12.09698 -11.88945 -11.61248 -11.33566 -11.19985 -10.65941 -10.35740 -10.27886 -9.73058 -9.50015 -9.33465 -8.24580 -6.41604 0.39143 0.47324 1.41191 1.44565 1.55514 1.65786 2.14369 2.38654 2.82456 3.01528 3.05891 3.56572 3.79812 3.90237 4.00714 4.09543 4.16198 4.18229 4.27523 4.29680 4.33176 4.44238 4.59274 4.61369 4.68583 4.76399 4.77080 4.78031 4.88318 4.95966 5.06005 5.08572 5.09478 5.17877 5.27347 5.31103 5.37659 5.43287 5.46387 5.61107 5.61928 5.74502 5.76935 6.03504 6.10242 6.16632 6.66024 7.04249 7.29791 7.36653 7.55664 8.81082 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025099 B = 0.002959 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.325083 B = 9461.691542 C = 9920.828352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.087 4.087 3 C -0.122 4.122 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.103 4.103 8 C 0.201 3.799 9 H 0.073 0.927 10 C -0.150 4.150 11 N -0.727 5.727 12 C 0.712 3.288 13 O -0.641 6.641 14 N -0.633 5.633 15 C 0.106 3.894 16 C -0.110 4.110 17 C 0.232 3.768 18 O -0.589 6.589 19 C -0.554 4.554 20 H 0.071 0.929 21 C 0.024 3.976 22 N -0.917 5.917 23 Si 0.966 3.034 24 H -0.262 1.262 25 H -0.280 1.280 26 H -0.283 1.283 27 C 0.128 3.872 28 H 0.068 0.932 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.126 0.874 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.084 0.916 38 H 0.405 0.595 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.374 0.626 44 H 0.269 0.731 45 H 0.041 0.959 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 18.155 -11.992 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.087 4.087 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.143 4.143 6 C -0.142 4.142 7 C -0.104 4.104 8 C 0.096 3.904 9 H 0.091 0.909 10 C -0.209 4.209 11 N -0.385 5.385 12 C 0.414 3.586 13 O -0.523 6.523 14 N -0.370 5.370 15 C -0.016 4.016 16 C -0.147 4.147 17 C 0.191 3.809 18 O -0.397 6.397 19 C -0.592 4.592 20 H 0.089 0.911 21 C -0.177 4.177 22 N -0.557 5.557 23 Si 0.791 3.209 24 H -0.186 1.186 25 H -0.206 1.206 26 H -0.209 1.209 27 C 0.004 3.996 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.144 0.856 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.243 0.757 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.224 0.776 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.922 18.359 -12.149 22.797 hybrid contribution -0.747 -1.465 0.760 1.812 sum 5.175 16.893 -11.389 21.021 Atomic orbital electron populations 1.20955 0.90574 1.03808 1.02737 1.19902 0.96804 0.92448 0.99579 1.21314 0.94817 0.97579 1.00276 1.21510 0.94339 0.99013 0.98946 1.21402 1.01120 0.91971 0.99790 1.21049 0.93177 0.99222 1.00730 1.19756 0.94440 0.93403 1.02794 1.19579 0.92643 0.83303 0.94864 0.90914 1.22120 1.02308 1.01682 0.94752 1.45173 1.10316 1.20284 1.62738 1.15706 0.84396 0.80116 0.78396 1.90837 1.14205 1.80453 1.66852 1.47869 1.07779 1.21236 1.60083 1.22124 0.78917 0.99406 1.01164 1.22593 0.97705 0.96375 0.98051 1.19882 0.90357 0.89261 0.81397 1.86066 1.48238 1.69858 1.35527 1.21846 1.06584 0.93276 1.37497 0.91117 1.25861 0.94582 1.02866 0.94369 1.69792 1.09968 1.37232 1.38670 0.85385 0.78158 0.79574 0.77765 1.18633 1.20620 1.20939 1.22687 0.99595 0.82849 0.94437 0.91375 0.89262 0.91609 0.83840 0.83537 0.83787 0.85621 0.91246 0.93944 0.89714 0.75675 0.91176 0.89179 0.89607 0.89118 0.77619 0.92153 0.94076 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.22 71.24 0.66 -1.53 16 2 C -0.09 -1.74 5.88 -19.86 -0.12 -1.85 16 3 C -0.12 -1.97 9.70 22.27 0.22 -1.76 16 4 C -0.12 -1.77 10.05 22.27 0.22 -1.55 16 5 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 6 C -0.12 -2.43 9.24 22.27 0.21 -2.22 16 7 C -0.10 -2.34 5.06 -19.87 -0.10 -2.44 16 8 C 0.20 5.54 2.09 44.25 0.09 5.63 16 9 H 0.07 2.38 6.44 -2.38 -0.02 2.36 16 10 C -0.15 -3.68 9.27 71.98 0.67 -3.01 16 11 N -0.73 -22.50 4.96 -461.42 -2.29 -24.78 16 12 C 0.71 29.89 8.45 179.05 1.51 31.41 16 13 O -0.64 -32.55 16.26 -3.99 -0.06 -32.61 16 14 N -0.63 -26.64 3.33 -829.58 -2.76 -29.40 16 15 C 0.11 3.48 6.15 86.73 0.53 4.01 16 16 C -0.11 -4.12 6.13 31.78 0.19 -3.92 16 17 C 0.23 11.30 0.88 -10.14 -0.01 11.29 16 18 O -0.59 -30.83 13.17 -148.98 -1.96 -32.79 16 19 C -0.55 -28.88 8.25 25.60 0.21 -28.67 16 20 H 0.07 3.55 7.78 -2.91 -0.02 3.53 16 21 C 0.02 1.26 5.29 84.66 0.45 1.70 16 22 N -0.92 -50.77 10.69 21.45 0.23 -50.54 16 23 Si 0.97 42.05 29.54 68.60 2.03 44.08 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 26 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 27 C 0.13 6.44 5.52 86.86 0.48 6.92 16 28 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.09 1.14 8.09 -2.39 -0.02 1.12 16 30 H 0.07 1.24 5.40 -2.38 -0.01 1.23 16 31 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 32 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 33 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 34 H 0.13 2.18 6.07 -2.91 -0.02 2.16 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 1.70 6.88 -2.38 -0.02 1.69 16 38 H 0.40 10.21 5.19 -92.71 -0.48 9.73 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.09 3.02 8.14 -2.38 -0.02 3.00 16 42 H 0.09 3.15 8.03 -2.38 -0.02 3.13 16 43 H 0.37 20.77 7.24 -74.06 -0.54 20.23 16 44 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 45 H 0.04 2.14 8.03 -2.39 -0.02 2.12 16 46 H 0.04 2.33 7.48 -2.39 -0.02 2.31 16 Total: -1.00 -68.70 368.45 0.61 -68.09 By element: Atomic # 1 Polarization: 45.75 SS G_CDS: -0.01 Total: 45.73 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.44 Total: 12.23 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -4.82 Total: -104.73 kcal Atomic # 8 Polarization: -63.38 SS G_CDS: -2.03 Total: -65.41 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -68.70 0.61 -68.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591888808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.519 kcal (2) G-P(sol) polarization free energy of solvation -68.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds