Wall clock time and date at job start Tue Mar 31 2020 12:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99857 * 2 1 4 4 C 1.38221 * 120.00104 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99348 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00385 * 359.70503 * 5 4 3 7 7 C 1.38207 * 120.00174 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99921 * 0.02562 * 7 2 1 9 9 C 1.52998 * 109.47293 * 84.99431 * 8 7 2 10 10 N 1.46496 * 109.47185 * 179.97438 * 9 8 7 11 11 C 1.34778 * 119.99967 * 180.02562 * 10 9 8 12 12 O 1.21585 * 119.99945 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00134 * 180.02562 * 11 10 9 14 14 C 1.47031 * 125.64691 * 0.02562 * 13 11 10 15 15 C 1.54327 * 107.26879 * 181.01415 * 14 13 11 16 16 C 1.55156 * 102.94181 * 22.19441 * 15 14 13 17 17 O 1.42897 * 111.00579 * 82.57426 * 16 15 14 18 18 C 1.50708 * 110.99876 * 206.38340 * 16 15 14 19 19 H 1.07995 * 120.00149 * 0.02562 * 18 16 15 20 20 C 1.37875 * 119.99534 * 180.02562 * 18 16 15 21 21 N 1.31519 * 120.00164 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99936 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47735 * 89.99495 * 22 20 18 24 24 H 1.48505 * 109.47173 * 210.00035 * 22 20 18 25 25 H 1.48511 * 109.46932 * 329.99328 * 22 20 18 26 26 C 1.47422 * 125.65171 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47160 * 270.02381 * 1 2 3 28 28 H 1.09008 * 109.47128 * 30.02264 * 1 2 3 29 29 H 1.09003 * 109.46943 * 150.01762 * 1 2 3 30 30 H 1.07999 * 120.00176 * 0.02562 * 3 2 1 31 31 H 1.07996 * 120.00180 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.99269 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99899 * 180.29332 * 6 5 4 34 34 H 1.09000 * 109.46748 * 325.00025 * 8 7 2 35 35 H 1.08997 * 109.46977 * 205.00151 * 8 7 2 36 36 H 1.09006 * 109.47079 * 60.00301 * 9 8 7 37 37 H 1.08998 * 109.47325 * 300.00658 * 9 8 7 38 38 H 0.97000 * 120.00179 * 0.02562 * 10 9 8 39 39 H 1.08998 * 109.88059 * 61.59780 * 14 13 11 40 40 H 1.08994 * 109.87878 * 300.43060 * 14 13 11 41 41 H 1.09001 * 110.71763 * 140.55775 * 15 14 13 42 42 H 1.08997 * 110.72099 * 263.64813 * 15 14 13 43 43 H 0.96698 * 114.00190 * 179.97438 * 17 16 15 44 44 H 0.97003 * 119.99594 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.36378 * 37.07938 * 26 13 11 46 46 H 1.09001 * 110.46274 * 274.80114 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0811 -2.8811 -1.4365 10 7 0.3492 -4.1501 -1.4365 11 6 -0.0750 -4.6834 -2.5994 12 8 0.1495 -4.1110 -3.6483 13 7 -0.7488 -5.8506 -2.5994 14 6 -1.0884 -6.6440 -1.4090 15 6 -1.8341 -7.9044 -1.8959 16 6 -1.3764 -8.0300 -3.3731 17 8 -0.1075 -8.6811 -3.4625 18 6 -2.4099 -8.7516 -4.1992 19 1 -3.3221 -9.1006 -3.7383 20 6 -2.1907 -8.9663 -5.5434 21 7 -1.0800 -8.5409 -6.1047 22 14 -3.4720 -9.8600 -6.5676 23 1 -4.4278 -8.8750 -7.1345 24 1 -2.8007 -10.5909 -7.6723 25 1 -4.2060 -10.8250 -5.7099 26 6 -1.2683 -6.5428 -3.7928 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1327 0.0010 32 1 5.3517 0.0001 0.0005 33 1 4.1206 -2.1322 0.0109 34 1 0.5336 -2.3956 0.5896 35 1 2.0693 -3.2822 0.4353 36 1 1.9920 -2.9875 -2.0257 37 1 0.4564 -2.1009 -1.8712 38 1 0.1698 -4.6066 -0.5996 39 1 -1.7327 -6.0640 -0.7484 40 1 -0.1780 -6.9319 -0.8834 41 1 -1.5287 -8.7791 -1.3217 42 1 -2.9130 -7.7620 -1.8343 43 1 0.2195 -8.7827 -4.3668 44 1 -0.9261 -8.6916 -7.0505 45 1 -0.5749 -6.4335 -4.6267 46 1 -2.2497 -6.1526 -4.0626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591895871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:42 Heat of formation + Delta-G solvation = -63.006855 kcal Electronic energy + Delta-G solvation = -26335.609430 eV Core-core repulsion = 22610.531617 eV Total energy + Delta-G solvation = -3725.077813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.97794 -39.45970 -37.41392 -35.30710 -34.22172 -33.13216 -32.24865 -32.12772 -30.14530 -28.62304 -27.71835 -27.00343 -25.09162 -23.51881 -22.36665 -22.06569 -20.80422 -19.62967 -19.39301 -17.56609 -17.05764 -16.54402 -16.17384 -15.80974 -15.24060 -15.11574 -14.91523 -14.42751 -14.27778 -14.11424 -13.70236 -13.38856 -13.16879 -13.10725 -12.92140 -12.75928 -12.50304 -12.39797 -12.08989 -11.78458 -11.67593 -11.58739 -11.38087 -11.11992 -11.05211 -11.02432 -10.76990 -10.57472 -10.48653 -10.16133 -9.60892 -9.37632 -9.00968 -8.80450 -8.77254 -8.66889 -8.34838 -7.65096 -6.27576 -4.37210 1.12012 1.18270 3.13458 3.22021 3.29063 3.31691 3.55092 3.78422 4.25963 4.42076 4.56620 4.67095 4.76627 4.82154 4.96509 4.98283 4.99865 5.10586 5.33309 5.38238 5.41835 5.43021 5.48778 5.63222 5.66077 5.78696 5.80017 5.85926 5.94629 6.03684 6.06146 6.16494 6.27933 6.30364 6.45863 6.52669 6.72448 6.76857 6.82061 6.89205 6.99005 7.25579 7.34669 7.65978 7.76176 8.02233 8.56145 8.67251 9.16590 9.32627 9.48415 10.79639 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.002337 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.850067 B =11980.532329 C =12041.547533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.125 4.125 6 C -0.109 4.109 7 C -0.079 4.079 8 C -0.093 4.093 9 C 0.146 3.854 10 N -0.753 5.753 11 C 0.716 3.284 12 O -0.597 6.597 13 N -0.627 5.627 14 C 0.106 3.894 15 C -0.117 4.117 16 C 0.249 3.751 17 O -0.585 6.585 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.070 3.930 21 N -0.894 5.894 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.111 3.889 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.393 0.607 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.386 0.614 44 H 0.271 0.729 45 H 0.080 0.920 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.623 14.938 14.972 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.078 4.078 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.144 4.144 6 C -0.127 4.127 7 C -0.080 4.080 8 C -0.131 4.131 9 C 0.022 3.978 10 N -0.410 5.410 11 C 0.418 3.582 12 O -0.476 6.476 13 N -0.364 5.364 14 C -0.018 4.018 15 C -0.154 4.154 16 C 0.208 3.792 17 O -0.395 6.395 18 C -0.576 4.576 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.533 5.533 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.011 4.011 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.226 0.774 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.238 0.762 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.856 15.417 14.637 22.050 hybrid contribution -0.553 -0.520 -0.814 1.113 sum 5.304 14.897 13.822 21.002 Atomic orbital electron populations 1.20918 0.91164 1.03436 1.02378 1.19812 0.96124 0.92595 0.99285 1.21026 0.94288 0.97420 1.01147 1.21129 0.94324 0.98040 1.00361 1.21119 0.99856 0.92516 1.00862 1.21089 0.93531 0.98345 0.99775 1.19545 0.93598 0.94016 1.00793 1.20800 1.00556 0.94592 0.97127 1.21047 0.96438 0.85029 0.95307 1.45115 1.62531 1.25363 1.08015 1.15514 0.78654 0.80388 0.83685 1.90887 1.63281 1.62751 1.30673 1.47894 1.57454 1.20742 1.10315 1.21919 0.98477 0.93274 0.88090 1.22596 0.99225 0.95289 0.98335 1.19596 0.83068 0.86821 0.89692 1.86053 1.37345 1.81205 1.34886 1.21494 1.04441 1.37806 0.93838 0.91478 1.25092 0.95810 0.94572 0.97820 1.69575 1.24903 1.45813 1.13029 0.86387 0.81110 0.79686 0.79615 1.20406 1.20987 1.19696 1.23147 0.97859 0.93732 0.86334 0.91108 0.91461 0.90768 0.86149 0.86233 0.86137 0.85898 0.90141 0.90270 0.91749 0.91700 0.77391 0.93197 0.92675 0.90792 0.90507 0.76169 0.91867 0.90136 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.22 36.00 0.33 -0.69 16 2 C -0.08 -0.76 5.88 -104.63 -0.62 -1.37 16 3 C -0.12 -1.09 9.70 -39.58 -0.38 -1.47 16 4 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 5 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 6 C -0.11 -1.05 9.68 -39.58 -0.38 -1.44 16 7 C -0.08 -0.79 5.13 -104.62 -0.54 -1.33 16 8 C -0.09 -0.89 4.76 -27.88 -0.13 -1.02 16 9 C 0.15 1.92 5.46 -4.04 -0.02 1.90 16 10 N -0.75 -11.36 5.52 -65.23 -0.36 -11.72 16 11 C 0.72 14.81 8.49 -86.92 -0.74 14.07 16 12 O -0.60 -14.83 16.60 5.29 0.09 -14.74 16 13 N -0.63 -13.12 3.33 -176.24 -0.59 -13.71 16 14 C 0.11 1.83 6.15 -3.06 -0.02 1.81 16 15 C -0.12 -2.28 6.12 -24.90 -0.15 -2.43 16 16 C 0.25 6.04 0.89 -89.62 -0.08 5.96 16 17 O -0.58 -15.11 13.18 -35.23 -0.46 -15.57 16 18 C -0.54 -13.92 8.25 -34.44 -0.28 -14.21 16 19 H 0.07 1.69 7.76 -52.49 -0.41 1.28 16 20 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 21 N -0.89 -23.99 10.72 55.43 0.59 -23.40 16 22 Si 0.90 20.33 29.54 -169.99 -5.02 15.31 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 26 C 0.11 2.72 5.63 -2.53 -0.01 2.70 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.51 8.09 -51.92 -0.42 0.09 16 29 H 0.07 0.68 5.43 -51.93 -0.28 0.40 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.08 0.67 6.99 -51.93 -0.36 0.31 16 35 H 0.08 0.68 8.05 -51.93 -0.42 0.26 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.92 6.91 -51.93 -0.36 0.56 16 38 H 0.39 4.84 7.46 -40.82 -0.30 4.53 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.08 1.41 8.02 -51.93 -0.42 0.99 16 43 H 0.39 10.38 6.93 45.56 0.32 10.70 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 45 H 0.08 2.23 7.64 -51.93 -0.40 1.83 16 46 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 373.52 15.07 5.63 5.63 Total: -1.00 -31.23 373.52 -10.45 -41.68 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -6.41 Total: 15.25 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -3.92 Total: 1.27 kcal Atomic # 7 Polarization: -48.47 SS G_CDS: -0.35 Total: -48.82 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.38 Total: -30.32 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.23 -10.45 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591895871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.325 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds