Wall clock time and date at job start Tue Mar 31 2020 12:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38257 * 119.99857 * 2 1 4 4 C 1.38221 * 120.00104 * 179.97438 * 3 2 1 5 5 C 1.38259 * 119.99348 * 0.02562 * 4 3 2 6 6 C 1.38209 * 120.00385 * 359.70503 * 5 4 3 7 7 C 1.38207 * 120.00174 * 179.97438 * 2 1 3 8 8 C 1.50703 * 119.99921 * 0.02562 * 7 2 1 9 9 C 1.52998 * 109.47293 * 84.99431 * 8 7 2 10 10 N 1.46496 * 109.47185 * 179.97438 * 9 8 7 11 11 C 1.34778 * 119.99967 * 180.02562 * 10 9 8 12 12 O 1.21585 * 119.99945 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00134 * 180.02562 * 11 10 9 14 14 C 1.47031 * 125.64691 * 0.02562 * 13 11 10 15 15 C 1.54327 * 107.26879 * 181.01415 * 14 13 11 16 16 C 1.55156 * 102.94181 * 22.19441 * 15 14 13 17 17 O 1.42897 * 111.00579 * 82.57426 * 16 15 14 18 18 C 1.50708 * 110.99876 * 206.38340 * 16 15 14 19 19 H 1.07995 * 120.00149 * 0.02562 * 18 16 15 20 20 C 1.37875 * 119.99534 * 180.02562 * 18 16 15 21 21 N 1.31519 * 120.00164 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 119.99936 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47735 * 89.99495 * 22 20 18 24 24 H 1.48505 * 109.47173 * 210.00035 * 22 20 18 25 25 H 1.48511 * 109.46932 * 329.99328 * 22 20 18 26 26 C 1.47422 * 125.65171 * 179.97438 * 13 11 10 27 27 H 1.09001 * 109.47160 * 270.02381 * 1 2 3 28 28 H 1.09008 * 109.47128 * 30.02264 * 1 2 3 29 29 H 1.09003 * 109.46943 * 150.01762 * 1 2 3 30 30 H 1.07999 * 120.00176 * 0.02562 * 3 2 1 31 31 H 1.07996 * 120.00180 * 180.02562 * 4 3 2 32 32 H 1.08001 * 119.99269 * 179.97438 * 5 4 3 33 33 H 1.08000 * 119.99899 * 180.29332 * 6 5 4 34 34 H 1.09000 * 109.46748 * 325.00025 * 8 7 2 35 35 H 1.08997 * 109.46977 * 205.00151 * 8 7 2 36 36 H 1.09006 * 109.47079 * 60.00301 * 9 8 7 37 37 H 1.08998 * 109.47325 * 300.00658 * 9 8 7 38 38 H 0.97000 * 120.00179 * 0.02562 * 10 9 8 39 39 H 1.08998 * 109.88059 * 61.59780 * 14 13 11 40 40 H 1.08994 * 109.87878 * 300.43060 * 14 13 11 41 41 H 1.09001 * 110.71763 * 140.55775 * 15 14 13 42 42 H 1.08997 * 110.72099 * 263.64813 * 15 14 13 43 43 H 0.96698 * 114.00190 * 179.97438 * 17 16 15 44 44 H 0.97003 * 119.99594 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.36378 * 37.07938 * 26 13 11 46 46 H 1.09001 * 110.46274 * 274.80114 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5805 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 6 1.0811 -2.8811 -1.4365 10 7 0.3492 -4.1501 -1.4365 11 6 -0.0750 -4.6834 -2.5994 12 8 0.1495 -4.1110 -3.6483 13 7 -0.7488 -5.8506 -2.5994 14 6 -1.0884 -6.6440 -1.4090 15 6 -1.8341 -7.9044 -1.8959 16 6 -1.3764 -8.0300 -3.3731 17 8 -0.1075 -8.6811 -3.4625 18 6 -2.4099 -8.7516 -4.1992 19 1 -3.3221 -9.1006 -3.7383 20 6 -2.1907 -8.9663 -5.5434 21 7 -1.0800 -8.5409 -6.1047 22 14 -3.4720 -9.8600 -6.5676 23 1 -4.4278 -8.8750 -7.1345 24 1 -2.8007 -10.5909 -7.6723 25 1 -4.2060 -10.8250 -5.7099 26 6 -1.2683 -6.5428 -3.7928 27 1 -0.3633 0.0004 1.0277 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5136 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1327 0.0010 32 1 5.3517 0.0001 0.0005 33 1 4.1206 -2.1322 0.0109 34 1 0.5336 -2.3956 0.5896 35 1 2.0693 -3.2822 0.4353 36 1 1.9920 -2.9875 -2.0257 37 1 0.4564 -2.1009 -1.8712 38 1 0.1698 -4.6066 -0.5996 39 1 -1.7327 -6.0640 -0.7484 40 1 -0.1780 -6.9319 -0.8834 41 1 -1.5287 -8.7791 -1.3217 42 1 -2.9130 -7.7620 -1.8343 43 1 0.2195 -8.7827 -4.3668 44 1 -0.9261 -8.6916 -7.0505 45 1 -0.5749 -6.4335 -4.6267 46 1 -2.2497 -6.1526 -4.0626 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591895871.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:41 Heat of formation + Delta-G solvation = -83.479673 kcal Electronic energy + Delta-G solvation = -26336.497198 eV Core-core repulsion = 22610.531617 eV Total energy + Delta-G solvation = -3725.965581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28533 -40.47037 -39.11541 -36.50803 -36.05958 -34.14413 -34.03113 -33.08296 -31.73661 -29.80677 -29.26330 -27.75583 -26.84990 -24.73440 -23.75524 -22.81810 -21.62450 -21.43280 -20.83248 -19.28883 -18.81856 -17.42818 -17.23236 -17.06668 -16.84256 -16.56916 -16.19383 -15.82563 -15.55389 -15.37232 -14.81140 -14.64914 -14.55888 -14.38090 -14.03570 -13.86437 -13.67316 -13.49110 -13.31395 -13.26913 -13.04792 -12.83643 -12.59868 -12.51054 -12.45201 -12.30999 -12.19944 -12.07857 -11.81776 -11.74596 -11.33887 -11.20320 -10.64407 -10.34540 -10.19531 -9.69559 -9.46333 -9.31101 -8.24905 -6.41960 0.42311 0.50375 1.42755 1.44720 1.54682 1.69336 2.15397 2.38751 2.83651 3.01250 3.11015 3.82095 3.88449 3.90068 4.03332 4.09539 4.13238 4.15546 4.21880 4.27847 4.36777 4.44134 4.55735 4.61339 4.65141 4.77105 4.80770 4.81678 4.96243 4.96682 5.00577 5.06461 5.11541 5.21531 5.31243 5.35970 5.40981 5.46530 5.48379 5.61387 5.64320 5.76043 5.77880 6.03460 6.14628 6.20207 6.65693 7.07853 7.30889 7.40004 7.57698 8.80690 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029596 B = 0.002337 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.850067 B =11980.532329 C =12041.547533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.132 4.132 4 C -0.126 4.126 5 C -0.136 4.136 6 C -0.123 4.123 7 C -0.096 4.096 8 C -0.078 4.078 9 C 0.149 3.851 10 N -0.728 5.728 11 C 0.708 3.292 12 O -0.648 6.648 13 N -0.632 5.632 14 C 0.107 3.893 15 C -0.111 4.111 16 C 0.232 3.768 17 O -0.590 6.590 18 C -0.554 4.554 19 H 0.072 0.928 20 C 0.023 3.977 21 N -0.919 5.919 22 Si 0.966 3.034 23 H -0.277 1.277 24 H -0.285 1.285 25 H -0.263 1.263 26 C 0.124 3.876 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.411 0.589 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.377 0.623 44 H 0.270 0.730 45 H 0.035 0.965 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.065 15.355 17.433 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.091 4.091 3 C -0.150 4.150 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.097 4.097 8 C -0.115 4.115 9 C 0.025 3.975 10 N -0.385 5.385 11 C 0.410 3.590 12 O -0.531 6.531 13 N -0.369 5.369 14 C -0.015 4.015 15 C -0.149 4.149 16 C 0.191 3.809 17 O -0.400 6.400 18 C -0.592 4.592 19 H 0.090 0.910 20 C -0.178 4.178 21 N -0.559 5.559 22 Si 0.792 3.208 23 H -0.203 1.203 24 H -0.210 1.210 25 H -0.187 1.187 26 C 0.001 3.999 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.149 0.851 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.248 0.752 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.227 0.773 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.297 15.831 17.190 23.962 hybrid contribution -0.331 -0.581 -1.571 1.707 sum 4.966 15.250 15.620 22.387 Atomic orbital electron populations 1.20921 0.90424 1.03192 1.03172 1.20067 0.96894 0.92870 0.99309 1.21316 0.94766 0.97945 1.00960 1.21457 0.94469 0.98911 0.99499 1.21414 1.00932 0.92450 1.00569 1.21323 0.93692 0.99154 0.99892 1.19658 0.93945 0.94256 1.01846 1.20686 1.01530 0.94878 0.94439 1.21121 0.94993 0.83634 0.97756 1.44900 1.61128 1.25542 1.06949 1.15771 0.78595 0.80189 0.84421 1.90848 1.65094 1.64116 1.33002 1.47834 1.57562 1.21070 1.10400 1.22139 0.99949 0.92405 0.87009 1.22604 1.00329 0.96983 0.94955 1.19866 0.82148 0.86005 0.92874 1.86042 1.38314 1.81498 1.34108 1.21849 1.05026 1.37923 0.94431 0.90984 1.25875 0.97514 0.95329 0.99043 1.69698 1.26421 1.46723 1.13081 0.85424 0.78770 0.78582 0.78057 1.20300 1.21018 1.18747 1.22703 0.95900 0.94769 0.86575 0.89722 0.90940 0.91768 0.84564 0.84194 0.84443 0.85124 0.88494 0.88892 0.93690 0.92808 0.75236 0.88881 0.90843 0.89630 0.89141 0.77282 0.92054 0.94606 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 9.22 71.24 0.66 -1.18 16 2 C -0.09 -1.66 5.88 -19.87 -0.12 -1.77 16 3 C -0.13 -2.18 9.70 22.27 0.22 -1.96 16 4 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 5 C -0.14 -2.22 10.05 22.27 0.22 -1.99 16 6 C -0.12 -2.22 9.68 22.27 0.22 -2.00 16 7 C -0.10 -1.82 5.13 -19.87 -0.10 -1.92 16 8 C -0.08 -1.33 4.76 29.85 0.14 -1.19 16 9 C 0.15 3.82 5.46 86.38 0.47 4.29 16 10 N -0.73 -20.90 5.52 -478.54 -2.64 -23.54 16 11 C 0.71 29.30 8.49 179.05 1.52 30.82 16 12 O -0.65 -33.30 16.60 -3.98 -0.07 -33.37 16 13 N -0.63 -26.13 3.33 -829.75 -2.76 -28.89 16 14 C 0.11 3.37 6.15 86.73 0.53 3.91 16 15 C -0.11 -4.10 6.12 31.78 0.19 -3.90 16 16 C 0.23 11.25 0.89 -10.15 -0.01 11.24 16 17 O -0.59 -30.94 13.18 -148.98 -1.96 -32.90 16 18 C -0.55 -28.75 8.25 25.60 0.21 -28.54 16 19 H 0.07 3.57 7.76 -2.91 -0.02 3.55 16 20 C 0.02 1.19 5.30 84.65 0.45 1.64 16 21 N -0.92 -50.86 10.72 21.45 0.23 -50.63 16 22 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 26 C 0.12 6.24 5.63 86.85 0.49 6.73 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 1.00 8.09 -2.38 -0.02 0.98 16 29 H 0.06 1.10 5.43 -2.39 -0.01 1.08 16 30 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.13 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.10 1.35 6.99 -2.39 -0.02 1.34 16 35 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 36 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.05 1.52 6.91 -2.39 -0.02 1.50 16 38 H 0.41 8.83 7.46 -92.71 -0.69 8.14 16 39 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.09 3.07 8.02 -2.39 -0.02 3.05 16 43 H 0.38 21.00 6.93 -74.06 -0.51 20.49 16 44 H 0.27 14.33 8.31 -92.71 -0.77 13.55 16 45 H 0.04 2.08 7.64 -2.39 -0.02 2.06 16 46 H 0.04 2.18 8.03 -2.39 -0.02 2.16 16 Total: -1.00 -70.27 373.52 -0.06 -70.34 By element: Atomic # 1 Polarization: 42.85 SS G_CDS: -0.21 Total: 42.64 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 5.32 Total: 12.45 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -5.17 Total: -103.05 kcal Atomic # 8 Polarization: -64.24 SS G_CDS: -2.03 Total: -66.27 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -70.27 -0.06 -70.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591895871.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.143 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds