Wall clock time and date at job start Tue Mar 31 2020 12:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00279 * 2 1 4 4 C 1.38215 * 119.99955 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00174 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.99741 * 359.74655 * 5 4 3 7 7 C 1.38210 * 119.99744 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.00073 * 0.02562 * 7 2 1 9 9 C 1.53000 * 109.46912 * 84.99891 * 8 7 2 10 10 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 8 12 12 O 1.21585 * 120.00319 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.47014 * 125.65006 * 359.69118 * 13 11 10 15 15 C 1.54334 * 107.26727 * 178.84830 * 14 13 11 16 16 C 1.55150 * 103.01843 * 338.14278 * 15 14 13 17 17 O 1.42904 * 111.00249 * 277.22581 * 16 15 14 18 18 C 1.50702 * 111.03738 * 153.39386 * 16 15 14 19 19 H 1.08001 * 120.00201 * 6.33059 * 18 16 15 20 20 C 1.37881 * 119.99941 * 186.32917 * 18 16 15 21 21 N 1.31510 * 119.99970 * 359.97438 * 20 18 16 22 22 Si 1.86807 * 119.99844 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47166 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46953 * 119.99862 * 22 20 18 25 25 H 1.48495 * 109.47082 * 239.99860 * 22 20 18 26 26 C 1.47421 * 125.64469 * 179.97438 * 13 11 10 27 27 H 1.08996 * 109.47332 * 270.03135 * 1 2 3 28 28 H 1.09003 * 109.46352 * 30.02953 * 1 2 3 29 29 H 1.08992 * 109.47270 * 150.02314 * 1 2 3 30 30 H 1.07997 * 119.99787 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.99750 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.00280 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.99900 * 180.27644 * 6 5 4 34 34 H 1.09002 * 109.47152 * 324.99663 * 8 7 2 35 35 H 1.09001 * 109.46980 * 204.99763 * 8 7 2 36 36 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 37 37 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 38 38 H 0.97005 * 120.00448 * 359.97438 * 10 9 8 39 39 H 1.09004 * 109.88099 * 298.39348 * 14 13 11 40 40 H 1.09002 * 109.88708 * 59.55724 * 14 13 11 41 41 H 1.09000 * 110.85511 * 219.67020 * 15 14 13 42 42 H 1.09009 * 110.51351 * 96.44936 * 15 14 13 43 43 H 0.96708 * 114.00082 * 173.64941 * 17 16 15 44 44 H 0.96998 * 120.00130 * 180.02562 * 21 20 18 45 45 H 1.08995 * 110.36989 * 322.93395 * 26 13 11 46 46 H 1.09005 * 110.36788 * 85.14450 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 -0.0001 0.0016 6 6 3.5806 -1.1971 0.0074 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 6 1.0811 -2.8811 -1.4365 10 7 0.3481 -4.1495 -1.4365 11 6 -0.0771 -4.6822 -2.5993 12 8 0.1473 -4.1098 -3.6482 13 7 -0.7511 -5.8494 -2.5992 14 6 -1.0837 -6.6467 -1.4097 15 6 -1.8806 -7.8776 -1.8913 16 6 -2.4338 -7.4195 -3.2666 17 8 -3.6268 -6.6489 -3.1078 18 6 -2.6728 -8.5990 -4.1736 19 1 -2.5563 -9.6037 -3.7950 20 6 -3.0403 -8.3954 -5.4869 21 7 -3.1826 -7.1720 -5.9478 22 14 -3.3372 -9.8575 -6.6111 23 1 -3.1142 -11.1163 -5.8554 24 1 -4.7352 -9.8218 -7.1107 25 1 -2.3990 -9.7968 -7.7605 26 6 -1.2717 -6.5409 -3.7926 27 1 -0.3634 0.0006 1.0276 28 1 -0.3632 0.8898 -0.5143 29 1 -0.3633 -0.8901 -0.5134 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3517 -0.0002 0.0024 33 1 4.1205 -2.1324 0.0128 34 1 0.5336 -2.3957 0.5897 35 1 2.0692 -3.2823 0.4352 36 1 0.4563 -2.1009 -1.8712 37 1 1.9919 -2.9875 -2.0256 38 1 0.1686 -4.6061 -0.5996 39 1 -0.1692 -6.9669 -0.9104 40 1 -1.6943 -6.0563 -0.7264 41 1 -2.6955 -8.1054 -1.2043 42 1 -1.2212 -8.7377 -2.0080 43 1 -3.9557 -6.2593 -3.9296 44 1 -3.4415 -7.0288 -6.8716 45 1 -1.6417 -5.8174 -4.5190 46 1 -0.4960 -7.1630 -4.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591895872.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:45 Heat of formation + Delta-G solvation = -62.846242 kcal Electronic energy + Delta-G solvation = -26367.457742 eV Core-core repulsion = 22642.386893 eV Total energy + Delta-G solvation = -3725.070849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -39.97511 -39.45923 -37.42224 -35.30310 -34.19614 -33.12176 -32.24155 -32.20822 -30.14003 -28.61871 -27.67552 -26.99029 -25.08743 -23.51777 -22.36963 -22.06333 -20.80061 -19.64631 -19.39504 -17.54975 -17.00697 -16.53620 -16.16400 -15.82532 -15.26766 -15.10432 -14.88977 -14.46091 -14.22515 -14.17112 -13.68626 -13.38457 -13.16067 -13.10607 -12.93921 -12.75152 -12.48670 -12.37950 -12.07562 -11.78523 -11.67264 -11.61039 -11.36031 -11.11527 -11.05392 -11.02260 -10.79234 -10.57914 -10.44726 -10.16863 -9.59485 -9.34490 -9.00898 -8.79871 -8.77126 -8.67911 -8.32938 -7.65738 -6.25434 -4.35198 1.12235 1.18362 3.13778 3.22148 3.30253 3.33426 3.55293 3.78769 4.27220 4.42468 4.57104 4.67535 4.76853 4.82594 4.96505 4.98296 5.01825 5.12138 5.33733 5.38591 5.42749 5.44653 5.49278 5.65071 5.66016 5.76594 5.79545 5.86715 5.94288 6.02605 6.06829 6.16716 6.28154 6.30161 6.46356 6.52838 6.72298 6.77037 6.82231 6.91001 6.99822 7.26136 7.35342 7.67719 7.76725 8.05832 8.56762 8.69636 9.17068 9.32250 9.40401 10.81578 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029370 B = 0.002362 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.136928 B =11851.059654 C =11938.882667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.079 4.079 8 C -0.093 4.093 9 C 0.146 3.854 10 N -0.753 5.753 11 C 0.716 3.284 12 O -0.596 6.596 13 N -0.629 5.629 14 C 0.105 3.895 15 C -0.116 4.116 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.537 4.537 19 H 0.067 0.933 20 C 0.071 3.929 21 N -0.891 5.891 22 Si 0.903 3.097 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.113 3.887 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.392 0.608 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.381 0.619 44 H 0.269 0.731 45 H 0.085 0.915 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.548 12.094 14.614 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.077 4.077 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.080 4.080 8 C -0.131 4.131 9 C 0.022 3.978 10 N -0.410 5.410 11 C 0.417 3.583 12 O -0.475 6.475 13 N -0.365 5.365 14 C -0.018 4.018 15 C -0.154 4.154 16 C 0.207 3.793 17 O -0.391 6.391 18 C -0.575 4.575 19 H 0.085 0.915 20 C -0.133 4.133 21 N -0.530 5.530 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.008 4.008 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.226 0.774 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.231 0.769 44 H 0.079 0.921 45 H 0.103 0.897 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.779 12.507 14.270 21.823 hybrid contribution -0.140 -0.696 -0.856 1.112 sum 10.639 11.811 13.414 20.800 Atomic orbital electron populations 1.20924 0.91092 1.03526 1.02427 1.19827 0.96170 0.92587 0.99136 1.21032 0.94281 0.97450 1.01090 1.21127 0.94328 0.98035 1.00358 1.21112 0.99821 0.92527 1.00951 1.21075 0.93514 0.98297 0.99899 1.19547 0.93582 0.94034 1.00811 1.20801 1.00573 0.94552 0.97145 1.21046 0.96352 0.85138 0.95284 1.45121 1.62476 1.25435 1.08014 1.15515 0.78743 0.80306 0.83689 1.90890 1.63277 1.62655 1.30700 1.47936 1.57411 1.20826 1.10372 1.21922 0.97864 0.93680 0.88348 1.22589 0.98536 0.95508 0.98745 1.19637 0.81642 0.88219 0.89779 1.86099 1.43919 1.70903 1.38223 1.21488 1.48109 0.92809 0.95134 0.91505 1.25089 0.93815 0.96303 0.98085 1.69729 1.46754 1.19755 1.16730 0.86359 0.77951 0.82333 0.80310 1.19609 1.20782 1.20791 1.23122 0.96446 0.95362 0.85914 0.91070 0.91418 0.90711 0.86120 0.86236 0.86166 0.85960 0.90082 0.90339 0.91654 0.91799 0.77401 0.93179 0.92710 0.90796 0.90457 0.76920 0.92065 0.89666 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.22 36.01 0.33 -0.75 16 2 C -0.08 -0.76 5.88 -104.62 -0.62 -1.38 16 3 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 4 C -0.12 -1.04 10.05 -39.58 -0.40 -1.43 16 5 C -0.13 -1.11 10.05 -39.58 -0.40 -1.50 16 6 C -0.11 -1.04 9.68 -39.58 -0.38 -1.42 16 7 C -0.08 -0.80 5.13 -104.62 -0.54 -1.33 16 8 C -0.09 -0.88 4.76 -27.88 -0.13 -1.02 16 9 C 0.15 1.92 5.46 -4.04 -0.02 1.90 16 10 N -0.75 -11.34 5.52 -65.23 -0.36 -11.70 16 11 C 0.72 14.79 8.49 -86.91 -0.74 14.05 16 12 O -0.60 -14.82 16.60 5.29 0.09 -14.73 16 13 N -0.63 -13.12 3.33 -176.25 -0.59 -13.71 16 14 C 0.11 1.82 6.15 -3.06 -0.02 1.80 16 15 C -0.12 -2.27 6.13 -24.89 -0.15 -2.42 16 16 C 0.25 5.98 0.87 -89.64 -0.08 5.90 16 17 O -0.58 -14.82 13.16 -35.23 -0.46 -15.29 16 18 C -0.54 -13.94 8.27 -34.44 -0.28 -14.22 16 19 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 20 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 21 N -0.89 -23.93 10.69 55.43 0.59 -23.34 16 22 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.11 2.77 5.38 -2.54 -0.01 2.76 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 29 H 0.07 0.73 5.43 -51.93 -0.28 0.44 16 30 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.08 0.70 6.99 -51.93 -0.36 0.34 16 35 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 36 H 0.07 0.94 6.91 -51.93 -0.36 0.59 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.39 4.83 7.46 -40.82 -0.30 4.52 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.08 1.43 8.03 -51.92 -0.42 1.01 16 43 H 0.38 9.99 7.56 45.56 0.34 10.34 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 45 H 0.08 2.35 7.33 -51.93 -0.38 1.97 16 46 H 0.06 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -31.23 373.58 -10.40 -41.64 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -6.36 Total: 14.93 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -3.92 Total: 1.20 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.35 Total: -48.75 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.38 Total: -30.02 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.23 -10.40 -41.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591895872.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.208 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds