Wall clock time and date at job start Tue Mar 31 2020 12:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38257 * 120.00279 * 2 1 4 4 C 1.38215 * 119.99955 * 179.97438 * 3 2 1 5 5 C 1.38257 * 120.00174 * 359.97438 * 4 3 2 6 6 C 1.38218 * 119.99741 * 359.74655 * 5 4 3 7 7 C 1.38210 * 119.99744 * 179.97438 * 2 1 3 8 8 C 1.50703 * 120.00073 * 0.02562 * 7 2 1 9 9 C 1.53000 * 109.46912 * 84.99891 * 8 7 2 10 10 N 1.46499 * 109.46840 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 8 12 12 O 1.21585 * 120.00319 * 359.97438 * 11 10 9 13 13 N 1.34783 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.47014 * 125.65006 * 359.69118 * 13 11 10 15 15 C 1.54334 * 107.26727 * 178.84830 * 14 13 11 16 16 C 1.55150 * 103.01843 * 338.14278 * 15 14 13 17 17 O 1.42904 * 111.00249 * 277.22581 * 16 15 14 18 18 C 1.50702 * 111.03738 * 153.39386 * 16 15 14 19 19 H 1.08001 * 120.00201 * 6.33059 * 18 16 15 20 20 C 1.37881 * 119.99941 * 186.32917 * 18 16 15 21 21 N 1.31510 * 119.99970 * 359.97438 * 20 18 16 22 22 Si 1.86807 * 119.99844 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47166 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46953 * 119.99862 * 22 20 18 25 25 H 1.48495 * 109.47082 * 239.99860 * 22 20 18 26 26 C 1.47421 * 125.64469 * 179.97438 * 13 11 10 27 27 H 1.08996 * 109.47332 * 270.03135 * 1 2 3 28 28 H 1.09003 * 109.46352 * 30.02953 * 1 2 3 29 29 H 1.08992 * 109.47270 * 150.02314 * 1 2 3 30 30 H 1.07997 * 119.99787 * 359.97438 * 3 2 1 31 31 H 1.08004 * 119.99750 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.00280 * 180.02562 * 5 4 3 33 33 H 1.07997 * 119.99900 * 180.27644 * 6 5 4 34 34 H 1.09002 * 109.47152 * 324.99663 * 8 7 2 35 35 H 1.09001 * 109.46980 * 204.99763 * 8 7 2 36 36 H 1.09001 * 109.47194 * 299.99742 * 9 8 7 37 37 H 1.08992 * 109.47399 * 59.99914 * 9 8 7 38 38 H 0.97005 * 120.00448 * 359.97438 * 10 9 8 39 39 H 1.09004 * 109.88099 * 298.39348 * 14 13 11 40 40 H 1.09002 * 109.88708 * 59.55724 * 14 13 11 41 41 H 1.09000 * 110.85511 * 219.67020 * 15 14 13 42 42 H 1.09009 * 110.51351 * 96.44936 * 15 14 13 43 43 H 0.96708 * 114.00082 * 173.64941 * 17 16 15 44 44 H 0.96998 * 120.00130 * 180.02562 * 21 20 18 45 45 H 1.08995 * 110.36989 * 322.93395 * 26 13 11 46 46 H 1.09005 * 110.36788 * 85.14450 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2718 -0.0001 0.0016 6 6 3.5806 -1.1971 0.0074 7 6 2.1980 -1.1970 0.0005 8 6 1.4445 -2.5021 0.0005 9 6 1.0811 -2.8811 -1.4365 10 7 0.3481 -4.1495 -1.4365 11 6 -0.0771 -4.6822 -2.5993 12 8 0.1473 -4.1098 -3.6482 13 7 -0.7511 -5.8494 -2.5992 14 6 -1.0837 -6.6467 -1.4097 15 6 -1.8806 -7.8776 -1.8913 16 6 -2.4338 -7.4195 -3.2666 17 8 -3.6268 -6.6489 -3.1078 18 6 -2.6728 -8.5990 -4.1736 19 1 -2.5563 -9.6037 -3.7950 20 6 -3.0403 -8.3954 -5.4869 21 7 -3.1826 -7.1720 -5.9478 22 14 -3.3372 -9.8575 -6.6111 23 1 -3.1142 -11.1163 -5.8554 24 1 -4.7352 -9.8218 -7.1107 25 1 -2.3990 -9.7968 -7.7605 26 6 -1.2717 -6.5409 -3.7926 27 1 -0.3634 0.0006 1.0276 28 1 -0.3632 0.8898 -0.5143 29 1 -0.3633 -0.8901 -0.5134 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1326 0.0010 32 1 5.3517 -0.0002 0.0024 33 1 4.1205 -2.1324 0.0128 34 1 0.5336 -2.3957 0.5897 35 1 2.0692 -3.2823 0.4352 36 1 0.4563 -2.1009 -1.8712 37 1 1.9919 -2.9875 -2.0256 38 1 0.1686 -4.6061 -0.5996 39 1 -0.1692 -6.9669 -0.9104 40 1 -1.6943 -6.0563 -0.7264 41 1 -2.6955 -8.1054 -1.2043 42 1 -1.2212 -8.7377 -2.0080 43 1 -3.9557 -6.2593 -3.9296 44 1 -3.4415 -7.0288 -6.8716 45 1 -1.6417 -5.8174 -4.5190 46 1 -0.4960 -7.1630 -4.2392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591895872.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:43 Heat of formation + Delta-G solvation = -83.407187 kcal Electronic energy + Delta-G solvation = -26368.349331 eV Core-core repulsion = 22642.386893 eV Total energy + Delta-G solvation = -3725.962438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.28346 -40.46941 -39.11859 -36.50172 -36.02391 -34.21991 -34.02746 -33.08190 -31.72795 -29.78345 -29.24091 -27.76150 -26.84777 -24.73577 -23.75594 -22.81705 -21.62494 -21.44734 -20.82896 -19.24493 -18.78736 -17.43950 -17.17730 -17.13536 -16.82146 -16.56273 -16.22127 -15.81712 -15.54132 -15.41293 -14.81541 -14.63077 -14.53511 -14.41001 -14.03309 -13.85925 -13.65807 -13.51278 -13.33886 -13.21480 -13.06160 -12.85941 -12.59910 -12.53618 -12.43216 -12.31807 -12.18763 -12.06828 -11.81644 -11.74540 -11.32080 -11.17567 -10.66344 -10.31687 -10.19659 -9.69238 -9.46312 -9.31257 -8.23384 -6.40577 0.42507 0.50607 1.41271 1.44667 1.55524 1.69979 2.15892 2.39082 2.83895 3.02725 3.11448 3.81364 3.88461 3.90330 4.02946 4.09180 4.12706 4.14457 4.22255 4.27954 4.36948 4.43849 4.56026 4.61551 4.65003 4.78291 4.80052 4.80786 4.95920 4.96860 5.00505 5.09037 5.12252 5.21903 5.31580 5.35527 5.40072 5.48034 5.49082 5.61488 5.64447 5.76318 5.77487 6.06700 6.14985 6.21197 6.67326 7.08235 7.28747 7.36175 7.58348 8.81872 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.029370 B = 0.002362 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.136928 B =11851.059654 C =11938.882667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.092 4.092 3 C -0.133 4.133 4 C -0.126 4.126 5 C -0.135 4.135 6 C -0.121 4.121 7 C -0.096 4.096 8 C -0.078 4.078 9 C 0.149 3.851 10 N -0.728 5.728 11 C 0.709 3.291 12 O -0.647 6.647 13 N -0.634 5.634 14 C 0.106 3.894 15 C -0.111 4.111 16 C 0.231 3.769 17 O -0.587 6.587 18 C -0.554 4.554 19 H 0.070 0.930 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.964 3.036 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.284 1.284 26 C 0.128 3.872 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.411 0.589 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.372 0.628 44 H 0.268 0.732 45 H 0.042 0.958 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.465 11.697 16.977 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.139 4.139 7 C -0.097 4.097 8 C -0.115 4.115 9 C 0.025 3.975 10 N -0.385 5.385 11 C 0.410 3.590 12 O -0.530 6.530 13 N -0.370 5.370 14 C -0.015 4.015 15 C -0.148 4.148 16 C 0.191 3.809 17 O -0.394 6.394 18 C -0.592 4.592 19 H 0.088 0.912 20 C -0.177 4.177 21 N -0.555 5.555 22 Si 0.790 3.210 23 H -0.186 1.186 24 H -0.206 1.206 25 H -0.210 1.210 26 C 0.004 3.996 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.157 0.843 33 H 0.152 0.848 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.248 0.752 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.221 0.779 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.706 12.098 16.724 23.729 hybrid contribution -0.388 -0.502 -1.583 1.705 sum 11.318 11.597 15.141 22.177 Atomic orbital electron populations 1.20916 0.90665 1.03095 1.03102 1.20059 0.96738 0.93022 0.99412 1.21304 0.94839 0.97878 1.01025 1.21455 0.94377 0.99003 0.99504 1.21424 1.00967 0.92405 1.00500 1.21327 0.93529 0.99227 0.99777 1.19661 0.94033 0.94168 1.01841 1.20687 1.01450 0.94977 0.94417 1.21119 0.95005 0.83594 0.97787 1.44904 1.61098 1.25588 1.06943 1.15770 0.78679 0.80097 0.84424 1.90850 1.65133 1.63994 1.33043 1.47870 1.57397 1.21273 1.10461 1.22140 0.99843 0.92490 0.87066 1.22597 0.99216 0.96909 0.96103 1.19877 0.80923 0.87530 0.92566 1.86091 1.44630 1.71066 1.37644 1.21831 1.47996 0.93557 0.95797 0.91199 1.25855 0.93726 0.98552 0.99563 1.69857 1.47381 1.21433 1.16833 0.85409 0.77556 0.79709 0.78359 1.18620 1.20647 1.20986 1.22651 0.96153 0.94256 0.86553 0.89789 0.91032 0.91948 0.84715 0.84203 0.84298 0.84822 0.88870 0.88508 0.93319 0.93192 0.75243 0.89013 0.90693 0.89524 0.89296 0.77943 0.92261 0.93958 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 9.22 71.24 0.66 -1.35 16 2 C -0.09 -1.73 5.88 -19.87 -0.12 -1.84 16 3 C -0.13 -2.24 9.70 22.27 0.22 -2.02 16 4 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 5 C -0.14 -2.14 10.05 22.27 0.22 -1.91 16 6 C -0.12 -2.10 9.68 22.27 0.22 -1.88 16 7 C -0.10 -1.81 5.13 -19.87 -0.10 -1.91 16 8 C -0.08 -1.33 4.76 29.85 0.14 -1.19 16 9 C 0.15 3.82 5.46 86.38 0.47 4.29 16 10 N -0.73 -20.86 5.52 -478.54 -2.64 -23.50 16 11 C 0.71 29.27 8.49 179.05 1.52 30.79 16 12 O -0.65 -33.31 16.60 -3.98 -0.07 -33.37 16 13 N -0.63 -26.14 3.33 -829.79 -2.76 -28.90 16 14 C 0.11 3.35 6.15 86.73 0.53 3.89 16 15 C -0.11 -4.08 6.13 31.78 0.19 -3.88 16 16 C 0.23 11.18 0.87 -10.16 -0.01 11.17 16 17 O -0.59 -30.18 13.16 -148.98 -1.96 -32.14 16 18 C -0.55 -28.80 8.27 25.60 0.21 -28.58 16 19 H 0.07 3.51 7.79 -2.91 -0.02 3.48 16 20 C 0.02 1.26 5.29 84.66 0.45 1.71 16 21 N -0.92 -50.73 10.69 21.45 0.23 -50.50 16 22 Si 0.96 42.07 29.54 68.60 2.03 44.10 16 23 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 26 C 0.13 6.40 5.38 86.85 0.47 6.87 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.09 8.09 -2.39 -0.02 1.08 16 29 H 0.06 1.18 5.43 -2.39 -0.01 1.17 16 30 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 33 H 0.13 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.09 1.38 6.99 -2.39 -0.02 1.36 16 35 H 0.10 1.31 8.05 -2.39 -0.02 1.29 16 36 H 0.05 1.43 6.91 -2.39 -0.02 1.41 16 37 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.41 8.81 7.46 -92.70 -0.69 8.12 16 39 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 42 H 0.09 3.05 8.03 -2.38 -0.02 3.03 16 43 H 0.37 20.24 7.56 -74.05 -0.56 19.68 16 44 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 45 H 0.04 2.46 7.33 -2.39 -0.02 2.44 16 46 H 0.04 1.99 8.03 -2.38 -0.02 1.97 16 Total: -1.00 -70.18 373.58 -0.13 -70.30 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: -0.26 Total: 41.60 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 5.30 Total: 12.41 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -5.17 Total: -102.90 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -2.03 Total: -65.51 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -70.18 -0.13 -70.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591895872.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.103 kcal (2) G-P(sol) polarization free energy of solvation -70.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds